Rmu_sc0001143.1_g000032

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001143.1
OG0001937
Physical Location & Seq
Reverse (-)
123387 .. 126509
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 807 bp
atggaagcagagttagcagtagctgcaaagatggtagtactgtcagtattggtgggtgggcttttgttcttgttttcatatttgtgtgaacttctgctgttgaggcctaaatccatgagatcaaagatggaaaagcaaggaattcgagggccgcgtcctacctttctattgggaaacctccctgaacagaagaggctccaaagcaagcagcagggtcagtcaatagcaacaaggactgatgatcatgatgatcatgcagcttctgtttctcatcaatggcatttgaaaatcttcccccacatagagcaatggagaaatgaatatggtccaatatttttgtgttcatctgcacacatacaacatttagtaataacagatatggaagtggtgaaggaaattagcttgtgtaagtctctagtcttgggaaaaccttccgcaacatccaaggttcttgggtcactattgggagagggcattttagcgtcgaacggatcaatgtgggagcatcaaaggaaaattatcgctcctgaactataccttgataaggtgaagggcatgatgaacctgttagtggattctacaacctcaatgctaagaacttgggaaaatgaagtccaaagccagggagaacttgctgatattagagttgatgatcatttgagaaacttatcagcagatgtcatctcaaaagcttgttttcatagcaattatcatcaaggaaaagaaatattctcaaaaattaggaagatgcaagaagttttgggaaagggattgatggggatagaagccttgaccaggtatgcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

268

Amino Acids

30.13

Weight (kDa)

8.6

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 97 - 253 5.1e-15 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 154
AciI CCGC 2 cut(s) 152, 435
AclWI GGATC 1 cut(s) 499
AcsI RAATTY 1 cut(s) 141
AfaI GTAC 1 cut(s) 39
AfiI CCNNNNNNNGG 4 cut(s) 544, 571, 622, 795
AgsI TTSAA 1 cut(s) 286
AjnI CCWGG 2 cut(s) 621, 794
AluBI AGCT 4 cut(s) 23, 260, 402, 692
AluI AGCT 4 cut(s) 23, 260, 402, 692
Alw26I GTCTC 1 cut(s) 417
AlwI GGATC 1 cut(s) 499
AlwNI CAGNNNCTG 2 cut(s) 23, 263
AoxI GGCC 2 cut(s) 104, 149
ApeKI GCWGC 3 cut(s) 23, 208, 257
ApoI RAATTY 1 cut(s) 141
Asp700I GAANNNNTTC 2 cut(s) 290, 430
AspS9I GGNCC 2 cut(s) 149, 326
AsuHPI GGTGA 2 cut(s) 400, 559
AvaII GGWCC 1 cut(s) 326
BbvI GCAGC 3 cut(s) 10, 220, 269
BccI CCATC 3 cut(s) 25, 121, 769
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BciT130I CCWGG 2 cut(s) 623, 796
BclI TGATCA 3 cut(s) 241, 250, 652
BcoDI GTCTC 1 cut(s) 417
BfaI CTAG 1 cut(s) 416
BisI GCNGC 4 cut(s) 24, 152, 209, 258
BlsI GCNGC 4 cut(s) 25, 153, 210, 259
BmcAI AGTACT 1 cut(s) 39
Bme1390I CCNGG 2 cut(s) 623, 796
Bme18I GGWCC 1 cut(s) 326
BmgT120I GGNCC 2 cut(s) 149, 326
BmiI GGNNCC 1 cut(s) 197
BmrFI CCNGG 2 cut(s) 623, 796
BmsI GCATC 2 cut(s) 514, 738
BsaJI CCNNGG 2 cut(s) 444, 622
Bsc4I CCNNNNNNNGG 4 cut(s) 544, 571, 622, 795
Bse3DI GCAATG 1 cut(s) 314
BseBI CCWGG 2 cut(s) 623, 796
BseDI CCNNGG 2 cut(s) 444, 622
BseGI GGATG 1 cut(s) 440
BseLI CCNNNNNNNGG 4 cut(s) 544, 571, 622, 795
BseMI GCAATG 1 cut(s) 314
BseXI GCAGC 3 cut(s) 10, 220, 269
BsgI GTGCAG 1 cut(s) 333
Bsh1236I CGCG 1 cut(s) 154
BshFI GGCC 2 cut(s) 106, 151
BslI CCNNNNNNNGG 4 cut(s) 544, 571, 622, 795
BsmAI GTCTC 1 cut(s) 417
BsnI GGCC 2 cut(s) 106, 151
Bsp143I GATC 5 cut(s) 119, 241, 250, 491, 652
BspACI CCGC 2 cut(s) 152, 435
BspANI GGCC 2 cut(s) 106, 151
BspFNI CGCG 1 cut(s) 154
BspHI TCATGA 1 cut(s) 244
BspLI GGNNCC 1 cut(s) 197
BspPI GGATC 1 cut(s) 499
BsrDI GCAATG 1 cut(s) 314
BssECI CCNNGG 2 cut(s) 444, 622
BssMI GATC 5 cut(s) 119, 241, 250, 491, 652
BssT1I CCWWGG 1 cut(s) 444
Bst2UI CCWGG 2 cut(s) 623, 796
Bst4CI ACNGT 1 cut(s) 42
Bst6I CTCTTC 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 1 cut(s) 206
BstDEI CTNAG 1 cut(s) 593
BstENI CCTNNNNNAGG 2 cut(s) 542, 793
BstF5I GGATG 1 cut(s) 440
BstFNI CGCG 1 cut(s) 154
BstKTI GATC 5 cut(s) 122, 244, 253, 494, 655
BstMAI GTCTC 1 cut(s) 417
BstMBI GATC 5 cut(s) 119, 241, 250, 491, 652
BstMWI GCNNNNNNNGC 3 cut(s) 14, 23, 103
BstNI CCWGG 2 cut(s) 623, 796
BstSCI CCNGG 2 cut(s) 621, 794
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 10, 220, 269
BsuRI GGCC 2 cut(s) 106, 151
BtsCI GGATG 1 cut(s) 440
Cac8I GCNNGC 1 cut(s) 206
CaiI CAGNNNCTG 2 cut(s) 23, 263
CciI TCATGA 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 149, 326
CseI GACGC 2 cut(s) 143, 471
CsiI ACCWGGT 1 cut(s) 794
Csp6I GTAC 1 cut(s) 38
CviAII CATG 4 cut(s) 115, 245, 254, 556
CviQI GTAC 1 cut(s) 38
DdeI CTNAG 1 cut(s) 593
DpnI GATC 5 cut(s) 121, 243, 252, 493, 654
DpnII GATC 5 cut(s) 119, 241, 250, 491, 652
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 444
Eco147I AGGCCT 1 cut(s) 106
Eco47I GGWCC 1 cut(s) 326
EcoNI CCTNNNNNAGG 2 cut(s) 542, 793
EcoRI GAATTC 1 cut(s) 141
EcoRII CCWGG 2 cut(s) 621, 794
EcoT14I CCWWGG 1 cut(s) 444
EcoT22I ATGCAT 1 cut(s) 805
ErhI CCWWGG 1 cut(s) 444
FaeI CATG 4 cut(s) 118, 248, 257, 559
FatI CATG 4 cut(s) 114, 244, 253, 555
FbaI TGATCA 3 cut(s) 241, 250, 652
Fnu4HI GCNGC 4 cut(s) 24, 152, 209, 258
FokI GGATG 1 cut(s) 427
Fsp4HI GCNGC 4 cut(s) 24, 152, 209, 258
FspBI CTAG 1 cut(s) 416
GluI GCNGC 4 cut(s) 24, 152, 209, 258
HaeIII GGCC 2 cut(s) 106, 151
HgaI GACGC 2 cut(s) 143, 471
Hin1II CATG 4 cut(s) 118, 248, 257, 559
HindIII AAGCTT 1 cut(s) 690
HinfI GANTC 1 cut(s) 575
HphI GGTGA 2 cut(s) 400, 559
Hpy166II GTNNAC 1 cut(s) 89
Hpy188III TCNNGA 2 cut(s) 245, 527
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 487
HpyAV CCTTC 3 cut(s) 385, 441, 544
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 5 cut(s) 26, 257, 350, 751, 803
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 23, 103
HpyF3I CTNAG 1 cut(s) 593
Hsp92II CATG 4 cut(s) 118, 248, 257, 559
Ksp22I TGATCA 3 cut(s) 241, 250, 652
Kzo9I GATC 5 cut(s) 119, 241, 250, 491, 652
LmnI GCTCC 3 cut(s) 201, 502, 529
LpnPI CCDG 7 cut(s) 195, 197, 540, 578, 608, 635, 781
Lsp1109I GCAGC 3 cut(s) 10, 220, 269
LweI GCATC 2 cut(s) 514, 738
MabI ACCWGGT 1 cut(s) 794
MaeI CTAG 1 cut(s) 416
MaeIII GTNAC 1 cut(s) 456
MalI GATC 5 cut(s) 121, 243, 252, 493, 654
MboI GATC 5 cut(s) 119, 241, 250, 491, 652
MboII GAAGA 3 cut(s) 202, 283, 757
MluCI AATT 5 cut(s) 141, 396, 516, 706, 738
MnlI CCTC 6 cut(s) 96, 140, 186, 188, 463, 595
Mph1103I ATGCAT 1 cut(s) 805
MroXI GAANNNNTTC 2 cut(s) 290, 430
MslI CAYNNNNRTG 1 cut(s) 82
MspR9I CCNGG 2 cut(s) 623, 796
MvaI CCWGG 2 cut(s) 623, 796
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 14, 23, 103
NdeII GATC 5 cut(s) 119, 241, 250, 491, 652
NlaIII CATG 4 cut(s) 118, 248, 257, 559
NlaIV GGNNCC 1 cut(s) 197
NmuCI GTSAC 1 cut(s) 456
NsiI ATGCAT 1 cut(s) 805
PagI TCATGA 1 cut(s) 244
PceI AGGCCT 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 151
PdmI GAANNNNTTC 2 cut(s) 290, 430
PfeI GAWTC 1 cut(s) 575
PkrI GCNGC 4 cut(s) 25, 153, 210, 259
Psp6I CCWGG 2 cut(s) 621, 794
PspGI CCWGG 2 cut(s) 621, 794
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 2 cut(s) 149, 326
PstNI CAGNNNCTG 2 cut(s) 23, 263
RsaI GTAC 1 cut(s) 39
RsaNI GTAC 1 cut(s) 38
RseI CAYNNNNRTG 1 cut(s) 82
SatI GCNGC 4 cut(s) 24, 152, 209, 258
Sau3AI GATC 5 cut(s) 119, 241, 250, 491, 652
Sau96I GGNCC 2 cut(s) 149, 326
ScaI AGTACT 1 cut(s) 39
ScrFI CCNGG 2 cut(s) 623, 796
SexAI ACCWGGT 1 cut(s) 794
SfaNI GCATC 2 cut(s) 514, 738
SinI GGWCC 1 cut(s) 326
SmiMI CAYNNNNRTG 1 cut(s) 82
Sse9I AATT 5 cut(s) 141, 396, 516, 706, 738
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 2 cut(s) 152, 435
SspI AATATT 2 cut(s) 333, 729
SspMI CTAG 1 cut(s) 416
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 621, 794
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 145, 485
TasI AATT 5 cut(s) 141, 396, 516, 706, 738
TatI WGTACW 1 cut(s) 37
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 575
TseFI GTSAC 1 cut(s) 456
TseI GCWGC 3 cut(s) 23, 208, 257
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 6 cut(s) 66, 333, 333, 575, 624, 689
TspGWI ACGGA 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 326
XagI CCTNNNNNAGG 2 cut(s) 542, 793
XapI RAATTY 1 cut(s) 141
XmnI GAANNNNTTC 2 cut(s) 290, 430
XspI CTAG 1 cut(s) 416
ZrmI AGTACT 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.