Rmu_sc0003762.1_g000012

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003762.1
OG0001937
Physical Location & Seq
Forward (+)
39762 .. 45503
5742 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1221 bp
atggaaaagcaaggaattcgagggccgcgtcctacctttctattgggaagcctcccagaacagaagaggctccaaagcaagcagcagggtcagtcaatagcaacaaggactgatgatgatgatgatgatgatcatgcagcttctttttctcatcaatggtatttgaaaatcttcccccacatagagcaatggagaaatgaatacgtcgattctacaaccacaatgctcagaacttgggaaaatgaagtccaaaggcagggagaacttgctgaaattagagttgatgatcatttgagaaacttatcagcagatgtcatctcaaaagcttgttttcatagcaattatcatcaaggaaaagaaatattctcaaaaattaggaagctgcaagaagttttgggaaagggattgatggggatagaagccttgaccagatggtttccgacaacagaaaatataaagatatggatgttggaaaaggaaactcaatcactgatattgaaggtggtaaaacaacgtagtgaaggttcatatgagaaagatttgctgcaaatgcttcttgaaggtgccaaaagttctggtgatttaaatggcctatcatacaataagtttattgttgataactgcaagactatattctttgctggccatgagaccactgcccttgtagcatcatggagcttgctgttactagctctccatccagattggcaagctcgtgctcgagctgaggtacttgaaatctgtgttgataagcctctagatgctgatatgcttcgacaaatgaaagtgctcacaatggtgattcaggaggtattgcgtctttacccgcctgtactctttgtagcaagagaggtatttgaaactatcaaatttaaaaacataacaattccaaaggggacgctacttcaaataccaatccccttcttacaccagaaccttgatctatggggatctgatgctcataagttcaacccagaaagatttaccaatggaattgtcaaggcttgcaagtctccacaggcctacatgccattcggagcaggttctcgtatatgtgttggtcaacacttggctatgatagaacttaaggtgtttctttctataattctctcaaagttctgcttctccctctcatcagcataccagcattctcctgcgtataacattattctggagcctgaatatggtattattctacaaatgcgaagagcatctccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

406

Amino Acids

46.51

Weight (kDa)

7.67

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 60 - 388 5.9e-67 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1031
AccB1I GGYRCC 1 cut(s) 563
AccII CGCG 1 cut(s) 28
AciI CCGC 2 cut(s) 26, 827
AclWI GGATC 1 cut(s) 958
AcoI YGGCCR 1 cut(s) 643
AcsI RAATTY 2 cut(s) 15, 869
AfaI GTAC 2 cut(s) 732, 834
AfiI CCNNNNNNNGG 2 cut(s) 256, 1184
AflII CTTAAG 1 cut(s) 1085
AgsI TTSAA 7 cut(s) 166, 499, 560, 737, 860, 908, 970
AleI CACNNNNGTG 1 cut(s) 797
AluBI AGCT 7 cut(s) 140, 326, 382, 678, 692, 713, 725
AluI AGCT 7 cut(s) 140, 326, 382, 678, 692, 713, 725
Alw21I GWGCWC 2 cut(s) 721, 792
Alw26I GTCTC 2 cut(s) 644, 1017
AlwI GGATC 1 cut(s) 958
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 4 cut(s) 23, 589, 643, 1020
ApeKI GCWGC 4 cut(s) 82, 137, 382, 544
ApoI RAATTY 2 cut(s) 15, 869
Asp700I GAANNNNTTC 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 23
AsuHPI GGTGA 2 cut(s) 590, 811
AvaI CYCGRG 1 cut(s) 720
BalI TGGCCA 1 cut(s) 645
BanI GGYRCC 1 cut(s) 563
BauI CACGAG 1 cut(s) 714
Bbv12I GWGCWC 2 cut(s) 721, 792
BbvCI CCTCAGC 1 cut(s) 726
BbvI GCAGC 4 cut(s) 94, 149, 369, 531
BccI CCATC 3 cut(s) 403, 426, 705
BcgI CGANNNNNNTGC 1 cut(s) 33
BclI TGATCA 2 cut(s) 130, 286
BcoDI GTCTC 2 cut(s) 644, 1017
BfaI CTAG 2 cut(s) 689, 758
BfrI CTTAAG 1 cut(s) 1085
BfuAI ACCTGC 1 cut(s) 1031
BisI GCNGC 5 cut(s) 26, 83, 138, 383, 545
BlsI GCNGC 5 cut(s) 27, 84, 139, 384, 546
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 71, 565, 1176
BmsI GCATC 3 cut(s) 677, 751, 946
BpmI CTGGAG 1 cut(s) 1193
Bpu10I CCTNAGC 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 644
BsaXI ACNNNNNCTCC 2 cut(s) 678, 708
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 1184
Bse3DI GCAATG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 129
BseGI GGATG 2 cut(s) 471, 697
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 2 cut(s) 256, 1184
BseMI GCAATG 1 cut(s) 194
BseMII CTCAG 2 cut(s) 241, 717
BseXI GCAGC 4 cut(s) 94, 149, 369, 531
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 4 cut(s) 25, 591, 645, 1022
BshNI GGYRCC 1 cut(s) 563
BsiHKAI GWGCWC 2 cut(s) 721, 792
BsiHKCI CYCGRG 1 cut(s) 720
BslFI GGGAC 1 cut(s) 910
BslI CCNNNNNNNGG 2 cut(s) 256, 1184
BsmAI GTCTC 2 cut(s) 644, 1017
BsmFI GGGAC 1 cut(s) 910
BsmI GAATGC 1 cut(s) 1147
BsnI GGCC 4 cut(s) 25, 591, 645, 1022
Bso31I GGTCTC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 720
Bsp1286I GDGCHC 2 cut(s) 721, 792
Bsp143I GATC 4 cut(s) 130, 286, 940, 950
BspACI CCGC 2 cut(s) 26, 827
BspANI GGCC 4 cut(s) 25, 591, 645, 1022
BspCNI CTCAG 2 cut(s) 240, 718
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 3 cut(s) 71, 565, 1176
BspMI ACCTGC 1 cut(s) 1031
BspPI GGATC 1 cut(s) 958
BspQI GCTCTTC 1 cut(s) 1201
BspT107I GGYRCC 1 cut(s) 563
BspTI CTTAAG 1 cut(s) 1085
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 194
BssMI GATC 4 cut(s) 130, 286, 940, 950
BssSI CACGAG 1 cut(s) 714
Bst2BI CACGAG 1 cut(s) 714
Bst6I CTCTTC 2 cut(s) 59, 1201
BstAFI CTTAAG 1 cut(s) 1085
BstC8I GCNNGC 5 cut(s) 80, 643, 680, 711, 1006
BstDEI CTNAG 2 cut(s) 227, 726
BstF5I GGATG 2 cut(s) 471, 697
BstFNI CGCG 1 cut(s) 28
BstKTI GATC 4 cut(s) 133, 289, 943, 953
BstMAI GTCTC 2 cut(s) 644, 1017
BstMBI GATC 4 cut(s) 130, 286, 940, 950
BstMWI GCNNNNNNNGC 2 cut(s) 550, 665
BstNSI RCATGY 1 cut(s) 1030
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 4 cut(s) 94, 149, 369, 531
BstX2I RGATCY 1 cut(s) 950
BstYI RGATCY 1 cut(s) 950
BsuRI GGCC 4 cut(s) 25, 591, 645, 1022
BtsCI GGATG 2 cut(s) 471, 697
BtsI GCAGTG 1 cut(s) 654
BtsIMutI CAGTG 2 cut(s) 488, 654
BveI ACCTGC 1 cut(s) 1031
Cac8I GCNNGC 5 cut(s) 80, 643, 680, 711, 1006
Cfr13I GGNCC 1 cut(s) 23
CseI GACGC 3 cut(s) 17, 806, 907
Csp6I GTAC 2 cut(s) 731, 833
CspCI CAANNNNNGTGG 2 cut(s) 643, 678
CviAII CATG 4 cut(s) 134, 647, 672, 1027
CviQI GTAC 2 cut(s) 731, 833
DdeI CTNAG 2 cut(s) 227, 726
DpnI GATC 4 cut(s) 132, 288, 942, 952
DpnII GATC 4 cut(s) 130, 286, 940, 950
DraI TTTAAA 2 cut(s) 585, 874
EaeI YGGCCR 1 cut(s) 643
Eam1104I CTCTTC 2 cut(s) 59, 1201
EarI CTCTTC 2 cut(s) 59, 1201
Eco147I AGGCCT 1 cut(s) 1022
Eco31I GGTCTC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 720
EcoRI GAATTC 1 cut(s) 15
FaeI CATG 4 cut(s) 137, 650, 675, 1030
FalI AAGNNNNNCTT 2 cut(s) 1106, 1138
FaqI GGGAC 1 cut(s) 910
FatI CATG 4 cut(s) 133, 646, 671, 1026
FauI CCCGC 1 cut(s) 834
FauNDI CATATG 1 cut(s) 529
FbaI TGATCA 2 cut(s) 130, 286
Fnu4HI GCNGC 5 cut(s) 26, 83, 138, 383, 545
FokI GGATG 2 cut(s) 478, 684
Fsp4HI GCNGC 5 cut(s) 26, 83, 138, 383, 545
FspBI CTAG 2 cut(s) 689, 758
GluI GCNGC 5 cut(s) 26, 83, 138, 383, 545
GsuI CTGGAG 1 cut(s) 1193
HaeIII GGCC 4 cut(s) 25, 591, 645, 1022
HgaI GACGC 3 cut(s) 17, 806, 907
Hin1II CATG 4 cut(s) 137, 650, 675, 1030
HincII GTYRAC 1 cut(s) 1064
HindII GTYRAC 1 cut(s) 1064
HindIII AAGCTT 1 cut(s) 324
HinfI GANTC 2 cut(s) 209, 802
HphI GGTGA 2 cut(s) 590, 811
Hpy166II GTNNAC 1 cut(s) 1064
Hpy188I TCNGA 4 cut(s) 230, 441, 955, 1037
Hpy188III TCNNGA 5 cut(s) 557, 701, 758, 806, 1172
Hpy8I GTNNAC 1 cut(s) 1064
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 493, 515, 554, 931
HpyCH4IV ACGT 2 cut(s) 204, 514
HpyCH4V TGCA 5 cut(s) 137, 385, 547, 624, 1008
HpyF10VI GCNNNNNNNGC 2 cut(s) 550, 665
HpyF3I CTNAG 2 cut(s) 227, 726
HpySE526I ACGT 2 cut(s) 204, 514
Hsp92II CATG 4 cut(s) 137, 650, 675, 1030
Ksp22I TGATCA 2 cut(s) 130, 286
Kzo9I GATC 4 cut(s) 130, 286, 940, 950
LguI GCTCTTC 1 cut(s) 1201
LmnI GCTCC 4 cut(s) 75, 675, 1037, 1174
Lsp1109I GCAGC 4 cut(s) 94, 149, 369, 531
LweI GCATC 3 cut(s) 677, 751, 946
MaeI CTAG 2 cut(s) 689, 758
MaeII ACGT 2 cut(s) 204, 514
MaeIII GTNAC 1 cut(s) 684
MalI GATC 4 cut(s) 132, 288, 942, 952
MboI GATC 4 cut(s) 130, 286, 940, 950
MboII GAAGA 3 cut(s) 76, 163, 1218
MflI RGATCY 1 cut(s) 950
MhlI GDGCHC 2 cut(s) 721, 792
MlsI TGGCCA 1 cut(s) 645
MluCI AATT 8 cut(s) 15, 273, 340, 372, 869, 885, 993, 1104
MluNI TGGCCA 1 cut(s) 645
MmeI TCCRAC 2 cut(s) 450, 464
MnlI CCTC 8 cut(s) 14, 60, 62, 721, 765, 802, 844, 1139
Mox20I TGGCCA 1 cut(s) 645
MroXI GAANNNNTTC 1 cut(s) 170
MscI TGGCCA 1 cut(s) 645
MseI TTAA 3 cut(s) 584, 873, 1086
MslI CAYNNNNRTG 1 cut(s) 797
Msp20I TGGCCA 1 cut(s) 645
MspCI CTTAAG 1 cut(s) 1085
Mva1269I GAATGC 1 cut(s) 1147
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 550, 665
NdeI CATATG 1 cut(s) 529
NdeII GATC 4 cut(s) 130, 286, 940, 950
NlaIII CATG 4 cut(s) 137, 650, 675, 1030
NlaIV GGNNCC 3 cut(s) 71, 565, 1176
NspI RCATGY 1 cut(s) 1030
OliI CACNNNNGTG 1 cut(s) 797
PaeR7I CTCGAG 1 cut(s) 720
PceI AGGCCT 1 cut(s) 1022
PciSI GCTCTTC 1 cut(s) 1201
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 1147
PdmI GAANNNNTTC 1 cut(s) 170
PfeI GAWTC 2 cut(s) 209, 802
PkrI GCNGC 5 cut(s) 27, 84, 139, 384, 546
PspN4I GGNNCC 3 cut(s) 71, 565, 1176
PspPI GGNCC 1 cut(s) 23
PspXI VCTCGAGB 1 cut(s) 720
PsrI GAACNNNNNNTAC 2 cut(s) 508, 540
PsuI RGATCY 1 cut(s) 950
RsaI GTAC 2 cut(s) 732, 834
RsaNI GTAC 2 cut(s) 731, 833
RseI CAYNNNNRTG 1 cut(s) 797
SapI GCTCTTC 1 cut(s) 1201
SaqAI TTAA 3 cut(s) 584, 873, 1086
SatI GCNGC 5 cut(s) 26, 83, 138, 383, 545
Sau3AI GATC 4 cut(s) 130, 286, 940, 950
Sau96I GGNCC 1 cut(s) 23
SduI GDGCHC 2 cut(s) 721, 792
SfaNI GCATC 3 cut(s) 677, 751, 946
Sfr274I CTCGAG 1 cut(s) 720
SlaI CTCGAG 1 cut(s) 720
SmiI ATTTAAAT 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 797
SmlI CTYRAG 2 cut(s) 720, 1085
SmoI CTYRAG 2 cut(s) 720, 1085
Sse9I AATT 8 cut(s) 15, 273, 340, 372, 869, 885, 993, 1104
SseBI AGGCCT 1 cut(s) 1022
SsiI CCGC 2 cut(s) 26, 827
SspI AATATT 1 cut(s) 363
SspMI CTAG 2 cut(s) 689, 758
StuI AGGCCT 1 cut(s) 1022
SwaI ATTTAAAT 1 cut(s) 585
TaiI ACGT 2 cut(s) 207, 517
TaqI TCGA 4 cut(s) 19, 207, 721, 775
TasI AATT 8 cut(s) 15, 273, 340, 372, 869, 885, 993, 1104
TatI WGTACW 1 cut(s) 832
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 2 cut(s) 209, 802
Tru1I TTAA 3 cut(s) 584, 873, 1086
Tru9I TTAA 3 cut(s) 584, 873, 1086
TscAI CASTG 2 cut(s) 495, 661
TseI GCWGC 4 cut(s) 82, 137, 382, 544
TspDTI ATGAA 5 cut(s) 213, 258, 323, 516, 797
TspRI CASTG 2 cut(s) 495, 661
Vha464I CTTAAG 1 cut(s) 1085
XapI RAATTY 2 cut(s) 15, 869
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 1 cut(s) 1030
XhoI CTCGAG 1 cut(s) 720
XmnI GAANNNNTTC 1 cut(s) 170
XspI CTAG 2 cut(s) 689, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.