AT1G13680

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001750
Physical Location & Seq
Forward (+)
4690293 .. 4692841
2549 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13680.1

Sequence Viewer

Length: 1041 bp
ATGGCCAGTTTCAAATTCTTCTTTGCAGCCATAATTTTGGTTCTGTTTCATCCGGCAGCAATAACTTTTGTTGCTTCGTATGGCTCATTACAGCTTGGCGATCAATGCTCATCGGACGAAGACTGCAATGTTGGACTTGGTTGTTTTAAATGCGGTATAGATGTTGCAAGATGCGTTAGATCCAATATCACAGATCAGTTCTCCATTGTGAACAATTCGATGCCGTTTAATAAATATGCATTTTTGACGACCCACAATTCATATGCCATTGAAGGGAAAGCGCTTCATGTGGCGACCCAAGAAGATACTATAGTTCAACAACTCAACAGTGGTGTTCGAGCATTGATGTTGGATACGTACGATTACGAAGGAGACGTATGGTTTTGCCATTCCTTCGACGAACAATGCTTTGAGTTCACCAAATTTAATCGGGCGATAGACACATTCAAGGAGATATTCGCGTTCTTGACAGCGAATCCATCAGAGATCGTGACATTGATCTTGGAGGATTACGTCAAATCGCAAAACGGGTTAACCAAAGTATTTACCGATTCCGGTTTGAAGAAATTTTGGTTTCCGGTTCAAAATATGCCTATAGGTGGCCAAGATTGGCCGTTGGTTAAGGATATGGTCGCCAATAACCACCGGTTAATCGTTTTCACTTCAGCTAAATCTAAGCAAGAAACCGAAGGAATAGCTTACCAGTGGAATTACATGGTGGAAAATCAATATGGAGACGATGGAGTTAAACCAGATGAATGTAGCAATAGAGCAGATTCTGCACTGTTAACCGATAAAACGAAAGCTTTGGTTTCGGTAAACCATTTCAAGACAGTTCCGGTTAAGATATTGACTTGTGAGGAGAACTCTGAGCAACTTCTCGATATGATTAAGACATGTTACGTAGCCGCAGGGAACCGATGGGCCAATTTTGTCGCCGTCAACTTTTACAAGAGGAGTAATGGAGGAGGAACGTTTCAAGCAATTGATAAACTAAACGGAGAGCTTCTATGTGGACGTGATGATGTGCATGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.79

Weight (kDa)

5.12

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 70 - 346 2.4e-127 PI-PLC-like catalytic domain
PI-PLC_X PF26146 76 - 282 1.3e-22 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 461
AciI CCGC 2 cut(s) 153, 909
AclI AACGTT 1 cut(s) 974
AclWI GGATC 1 cut(s) 174
AcoI YGGCCR 3 cut(s) 3, 601, 611
AcsI RAATTY 3 cut(s) 14, 422, 566
AcuI CTGAAG 1 cut(s) 648
AfaI GTAC 1 cut(s) 359
AfeI AGCGCT 1 cut(s) 282
AfiI CCNNNNNNNGG 2 cut(s) 273, 599
AflIII ACRYGT 1 cut(s) 896
AgeI ACCGGT 1 cut(s) 645
AgsI TTSAA 8 cut(s) 13, 272, 317, 448, 562, 584, 829, 980
AjiI CACGTC 1 cut(s) 1019
AluBI AGCT 5 cut(s) 94, 668, 698, 806, 1006
AluI AGCT 5 cut(s) 94, 668, 698, 806, 1006
Alw26I GTCTC 2 cut(s) 366, 729
AlwI GGATC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 779
Aor51HI AGCGCT 1 cut(s) 282
AoxI GGCC 4 cut(s) 3, 601, 611, 924
ApeKI GCWGC 2 cut(s) 26, 56
ApoI RAATTY 3 cut(s) 14, 422, 566
AsiGI ACCGGT 1 cut(s) 645
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 924
AsuHPI GGTGA 1 cut(s) 409
BaeI ACNNNNGTAYC 2 cut(s) 297, 330
BalI TGGCCA 2 cut(s) 5, 603
BbsI GAAGAC 1 cut(s) 126
BbvI GCAGC 2 cut(s) 38, 68
BccI CCATC 3 cut(s) 487, 734, 915
BceAI ACGGC 3 cut(s) 208, 598, 923
BciVI GTATCC 1 cut(s) 346
BcoDI GTCTC 2 cut(s) 366, 729
BfmI CTRYAG 2 cut(s) 309, 594
BfoI RGCGCY 1 cut(s) 284
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 3 cut(s) 27, 57, 909
BlsI GCNGC 3 cut(s) 28, 58, 910
BmgBI CACGTC 1 cut(s) 1019
BmgT120I GGNCC 1 cut(s) 924
BmiI GGNNCC 1 cut(s) 917
BmsI GCATC 2 cut(s) 161, 210
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 851, 883
BsaAI YACGTR 2 cut(s) 357, 904
BsaWI WCCGGW 4 cut(s) 554, 577, 645, 838
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 599
Bse118I RCCGGY 1 cut(s) 645
Bse1I ACTGG 2 cut(s) 6, 703
Bse3DI GCAATG 1 cut(s) 133
BseGI GGATG 1 cut(s) 49
BseLI CCNNNNNNNGG 2 cut(s) 273, 599
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 861
BseNI ACTGG 2 cut(s) 6, 703
BseRI GAGGAG 3 cut(s) 875, 970, 981
BseXI GCAGC 2 cut(s) 38, 68
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 461
BshFI GGCC 4 cut(s) 5, 603, 613, 926
BshTI ACCGGT 1 cut(s) 645
BsiSI CCGG 5 cut(s) 53, 555, 578, 646, 839
BsiWI CGTACG 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 273, 599
BsmAI GTCTC 2 cut(s) 366, 729
BsmBI CGTCTC 2 cut(s) 366, 729
BsnI GGCC 4 cut(s) 5, 603, 613, 926
Bsp143I GATC 5 cut(s) 100, 179, 193, 486, 498
BspACI CCGC 2 cut(s) 153, 909
BspANI GGCC 4 cut(s) 5, 603, 613, 926
BspCNI CTCAG 1 cut(s) 862
BspFNI CGCG 1 cut(s) 461
BspLI GGNNCC 1 cut(s) 917
BspPI GGATC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 133
BsrFI RCCGGY 1 cut(s) 645
BsrI ACTGG 2 cut(s) 6, 703
BssAI RCCGGY 1 cut(s) 645
BssMI GATC 5 cut(s) 100, 179, 193, 486, 498
Bst4CI ACNGT 3 cut(s) 329, 786, 835
BstAPI GCANNNNNTGC 1 cut(s) 779
BstBAI YACGTR 2 cut(s) 357, 904
BstC8I GCNNGC 1 cut(s) 1032
BstDEI CTNAG 2 cut(s) 675, 870
BstF5I GGATG 1 cut(s) 49
BstFNI CGCG 1 cut(s) 461
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 5 cut(s) 103, 182, 196, 489, 501
BstMAI GTCTC 2 cut(s) 366, 729
BstMBI GATC 5 cut(s) 100, 179, 193, 486, 498
BstMWI GCNNNNNNNGC 2 cut(s) 105, 779
BstNSI RCATGY 2 cut(s) 900, 1034
BstSFI CTRYAG 2 cut(s) 309, 594
BstSNI TACGTA 2 cut(s) 357, 904
BstUI CGCG 1 cut(s) 461
BstV1I GCAGC 2 cut(s) 38, 68
BstV2I GAAGAC 1 cut(s) 126
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 37
BstYI RGATCY 1 cut(s) 179
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 4 cut(s) 5, 603, 613, 926
BtrI CACGTC 1 cut(s) 1019
BtsCI GGATG 1 cut(s) 49
BtsIMutI CAGTG 3 cut(s) 334, 710, 782
Cac8I GCNNGC 1 cut(s) 1032
CaiI CAGNNNCTG 1 cut(s) 779
CfoI GCGC 1 cut(s) 283
Cfr10I RCCGGY 1 cut(s) 645
Cfr13I GGNCC 1 cut(s) 924
Csp6I GTAC 1 cut(s) 358
CspAI ACCGGT 1 cut(s) 645
CviAII CATG 4 cut(s) 287, 715, 897, 1031
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 2 cut(s) 675, 870
DpnI GATC 5 cut(s) 102, 181, 195, 488, 500
DpnII GATC 5 cut(s) 100, 179, 193, 486, 498
DraI TTTAAA 1 cut(s) 148
EaeI YGGCCR 3 cut(s) 3, 601, 611
Eco105I TACGTA 2 cut(s) 357, 904
Eco47III AGCGCT 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 648
EcoT22I ATGCAT 1 cut(s) 241
Esp3I CGTCTC 2 cut(s) 366, 729
FaeI CATG 4 cut(s) 290, 718, 900, 1034
FatI CATG 4 cut(s) 286, 714, 896, 1030
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 27, 57, 909
FokI GGATG 1 cut(s) 36
Fsp4HI GCNGC 3 cut(s) 27, 57, 909
GlaI GCGC 1 cut(s) 282
GluI GCNGC 3 cut(s) 27, 57, 909
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 4 cut(s) 5, 603, 613, 926
HapII CCGG 5 cut(s) 53, 555, 578, 646, 839
HhaI GCGC 1 cut(s) 283
Hin1II CATG 4 cut(s) 290, 718, 900, 1034
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 3 cut(s) 534, 789, 943
HindII GTYRAC 3 cut(s) 534, 789, 943
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 3 cut(s) 475, 551, 776
HpaI GTTAAC 2 cut(s) 534, 789
HpaII CCGG 5 cut(s) 53, 555, 578, 646, 839
HphI GGTGA 1 cut(s) 409
Hpy166II GTNNAC 7 cut(s) 211, 417, 534, 789, 820, 943, 1016
Hpy188I TCNGA 3 cut(s) 115, 484, 871
Hpy188III TCNNGA 4 cut(s) 466, 490, 829, 881
Hpy8I GTNNAC 7 cut(s) 211, 417, 534, 789, 820, 943, 1016
Hpy99I CGWCG 1 cut(s) 401
HpyAV CCTTC 4 cut(s) 266, 362, 403, 683
HpyCH4III ACNGT 3 cut(s) 329, 786, 835
HpyCH4IV ACGT 6 cut(s) 356, 375, 513, 903, 974, 1018
HpyCH4V TGCA 6 cut(s) 26, 126, 167, 239, 782, 1030
HpyF10VI GCNNNNNNNGC 2 cut(s) 105, 779
HpyF3I CTNAG 2 cut(s) 675, 870
HpySE526I ACGT 6 cut(s) 356, 375, 513, 903, 974, 1018
Hsp92II CATG 4 cut(s) 290, 718, 900, 1034
HspAI GCGC 1 cut(s) 281
KspAI GTTAAC 2 cut(s) 534, 789
Kzo9I GATC 5 cut(s) 100, 179, 193, 486, 498
LpnPI CCDG 9 cut(s) 19, 66, 568, 591, 659, 716, 765, 852, 897
Lsp1109I GCAGC 2 cut(s) 38, 68
LweI GCATC 2 cut(s) 161, 210
MaeII ACGT 6 cut(s) 356, 375, 513, 903, 974, 1018
MaeIII GTNAC 2 cut(s) 490, 899
MalI GATC 5 cut(s) 102, 181, 195, 488, 500
MboI GATC 5 cut(s) 100, 179, 193, 486, 498
MboII GAAGA 4 cut(s) 10, 131, 314, 574
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 1 cut(s) 179
MlsI TGGCCA 2 cut(s) 5, 603
MluCI AATT 9 cut(s) 14, 33, 214, 256, 422, 566, 709, 928, 984
MluNI TGGCCA 2 cut(s) 5, 603
MmeI TCCRAC 2 cut(s) 112, 330
MnlI CCTC 5 cut(s) 499, 853, 948, 959, 962
Mox20I TGGCCA 2 cut(s) 5, 603
Mph1103I ATGCAT 1 cut(s) 241
MscI TGGCCA 2 cut(s) 5, 603
Msp20I TGGCCA 2 cut(s) 5, 603
MspI CCGG 5 cut(s) 53, 555, 578, 646, 839
MunI CAATTG 1 cut(s) 984
MvnI CGCG 1 cut(s) 461
MwoI GCNNNNNNNGC 2 cut(s) 105, 779
NdeI CATATG 1 cut(s) 262
NdeII GATC 5 cut(s) 100, 179, 193, 486, 498
NlaIII CATG 4 cut(s) 290, 718, 900, 1034
NlaIV GGNNCC 1 cut(s) 917
NmuCI GTSAC 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 241
NspI RCATGY 2 cut(s) 900, 1034
PaeI GCATGC 1 cut(s) 1034
PciI ACATGT 1 cut(s) 896
PcsI WCGNNNNNNNCGW 1 cut(s) 372
PfeI GAWTC 3 cut(s) 475, 551, 776
Pfl23II CGTACG 1 cut(s) 357
PinAI ACCGGT 1 cut(s) 645
PkrI GCNGC 3 cut(s) 28, 58, 910
Ppu21I YACGTR 2 cut(s) 357, 904
PscI ACATGT 1 cut(s) 896
Psp1406I AACGTT 1 cut(s) 974
PspLI CGTACG 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 917
PspPI GGNCC 1 cut(s) 924
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
SatI GCNGC 3 cut(s) 27, 57, 909
Sau3AI GATC 5 cut(s) 100, 179, 193, 486, 498
Sau96I GGNCC 1 cut(s) 924
SfaNI GCATC 2 cut(s) 161, 210
SfcI CTRYAG 2 cut(s) 309, 594
SnaBI TACGTA 2 cut(s) 357, 904
SphI GCATGC 1 cut(s) 1034
Sse9I AATT 9 cut(s) 14, 33, 214, 256, 422, 566, 709, 928, 984
SsiI CCGC 2 cut(s) 153, 909
TaaI ACNGT 3 cut(s) 329, 786, 835
TaiI ACGT 6 cut(s) 359, 378, 516, 906, 977, 1021
TaqI TCGA 4 cut(s) 218, 337, 396, 882
TasI AATT 9 cut(s) 14, 33, 214, 256, 422, 566, 709, 928, 984
TauI GCSGC 1 cut(s) 911
TfiI GAWTC 3 cut(s) 475, 551, 776
TscAI CASTG 3 cut(s) 334, 710, 789
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 2 cut(s) 26, 56
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 4 cut(s) 38, 249, 275, 771
TspGWI ACGGA 1 cut(s) 1014
TspRI CASTG 3 cut(s) 334, 710, 789
XapI RAATTY 3 cut(s) 14, 422, 566
XceI RCATGY 2 cut(s) 900, 1034
Zsp2I ATGCAT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.