Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Reverse (-)

64308075 .. 64308400

Gene Structure 326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0512500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGGTTCCAACAAGGCCTTTTTTGTATTTGCTCTTGTTCTTCTCATCATCTCCTCTGAGGTAGCAGCACGAGACCTCCTCGACCACACTTCTACTCATGCCAAGATGAAAGAGTATGGTGGATATGAAAGAAAGCTTACTAGTGGTAAGGGTGAGCCCATTACAAGATGCGCCCTAAATCCGAACCGGACCTGCTACCCACCACCACGATGCCCACCATATATCAGAAACTGTCGTCACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

9.11

Weight (kDa)

9.46

Isoelectric Point (pI)

30.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	200
AhlI	ACTAGT	1 cut(s)	140
AluBI	AGCT	1 cut(s)	136
AluI	AGCT	1 cut(s)	136
Alw26I	GTCTC	1 cut(s)	66
AlwNI	CAGNNNCTG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	15
ApeKI	GCWGC	1 cut(s)	65
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	2 cut(s)	164, 230
AvaII	GGWCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	77
BcoDI	GTCTC	1 cut(s)	66
BcuI	ACTAGT	1 cut(s)	140
BfaI	CTAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	66
BlsI	GCNGC	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	2 cut(s)	158, 200
BplI	GAGNNNNNCTC	2 cut(s)	63, 95
BsaI	GGTCTC	1 cut(s)	66
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
BseMII	CTCAG	1 cut(s)	48
BseRI	GAGGAG	2 cut(s)	43, 68
BseXI	GCAGC	1 cut(s)	77
BshFI	GGCC	1 cut(s)	17
BsiSI	CCGG	1 cut(s)	187
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	17
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	159
BspANI	GGCC	1 cut(s)	17
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	66
BssSI	CACGAG	1 cut(s)	69
Bst2BI	CACGAG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	173
BstMAI	GTCTC	1 cut(s)	66
BstV1I	GCAGC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	17
BveI	ACCTGC	1 cut(s)	200
CaiI	CAGNNNCTG	1 cut(s)	231
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	189
CviAII	CATG	2 cut(s)	98, 243
CviJI	RGCY	3 cut(s)	17, 136, 157
CviKI_1	RGCY	3 cut(s)	17, 136, 157
DdeI	CTNAG	1 cut(s)	57
Eco147I	AGGCCT	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	159
Eco31I	GGTCTC	1 cut(s)	66
Eco47I	GGWCC	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	159
FaeI	CATG	2 cut(s)	101, 246
FaiI	YATR	6 cut(s)	99, 117, 126, 220, 222, 244
FatI	CATG	2 cut(s)	97, 242
Fnu4HI	GCNGC	1 cut(s)	66
FriOI	GRGCYC	1 cut(s)	159
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	17
HapII	CCGG	1 cut(s)	187
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	101, 246
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	134
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	164, 230
Hpy188I	TCNGA	3 cut(s)	58, 183, 227
HpyCH4III	ACNGT	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	101, 246
HspAI	GCGC	1 cut(s)	171
LpnPI	CCDG	2 cut(s)	200, 205
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	2 cut(s)	158, 200
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	236
MboII	GAAGA	1 cut(s)	32
MhlI	GDGCHC	1 cut(s)	159
MmeI	TCCRAC	1 cut(s)	33
MnlI	CCTC	4 cut(s)	52, 64, 86, 89
MslI	CAYNNNNRTG	1 cut(s)	208
MspI	CCGG	1 cut(s)	187
NlaIII	CATG	2 cut(s)	101, 246
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	236
PceI	AGGCCT	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	1 cut(s)	189
PstNI	CAGNNNCTG	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	208
SatI	GCNGC	1 cut(s)	66
Sau96I	GGNCC	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	159
SetI	ASST	4 cut(s)	63, 78, 138, 194
SfaNI	GCATC	2 cut(s)	158, 200
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	208
SpeI	ACTAGT	1 cut(s)	140
SseBI	AGGCCT	1 cut(s)	17
SspMI	CTAG	1 cut(s)	141
StuI	AGGCCT	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	81
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	122, 141
VpaK11BI	GGWCC	1 cut(s)	189
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.