Rh1CG043900

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
8243937 .. 8245818
1882 bp
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UTR
Exon/CDS
Intron
Rh1CG043900.1

Sequence Viewer

Length: 786 bp
ATGAAGACGACTCGGCATAGCTTCCTTCTGGTTCTAGTTCTGGTTATGGCTTTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGACGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTCGGAGTTTTCTGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACGGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGATACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGTCATGACTACACTGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGTTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTATATGGTTGAAAACCAGTGTAAGAACCAACTAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.26

Weight (kDa)

5.11

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 75 - 258 6.7e-99 PI-PLC-like catalytic domain
PI-PLC_X PF26146 106 - 255 2.2e-20 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AcoI YGGCCR 1 cut(s) 647
AfiI CCNNNNNNNGG 1 cut(s) 635
AgsI TTSAA 8 cut(s) 226, 244, 433, 484, 554, 583, 702, 758
AjnI CCWGG 1 cut(s) 514
AluBI AGCT 7 cut(s) 21, 80, 103, 220, 470, 557, 587
AluI AGCT 7 cut(s) 21, 80, 103, 220, 470, 557, 587
Alw21I GWGCWC 1 cut(s) 119
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 1 cut(s) 574
BccI CCATC 2 cut(s) 83, 304
BceAI ACGGC 1 cut(s) 634
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 1 cut(s) 516
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 1 cut(s) 471
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 3 cut(s) 611, 739, 763
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 1 cut(s) 514
BseLI CCNNNNNNNGG 1 cut(s) 635
BseNI ACTGG 3 cut(s) 611, 739, 763
BseXI GCAGC 1 cut(s) 574
BshFI GGCC 1 cut(s) 649
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 591, 614
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 119, 379
Bsp143I GATC 2 cut(s) 109, 194
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 649
BspHI TCATGA 1 cut(s) 445
BspLI GGNNCC 1 cut(s) 181
BsrI ACTGG 3 cut(s) 611, 739, 763
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 2 cut(s) 109, 194
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 96, 152, 346
BstC8I GCNNGC 3 cut(s) 82, 101, 468
BstDEI CTNAG 2 cut(s) 106, 672
BstKTI GATC 2 cut(s) 112, 197
BstMBI GATC 2 cut(s) 109, 194
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 1 cut(s) 471
BstV1I GCAGC 1 cut(s) 574
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 649
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 101, 119, 453, 746, 770
Cac8I GCNNGC 3 cut(s) 82, 101, 468
CciI TCATGA 1 cut(s) 445
CviAII CATG 3 cut(s) 66, 446, 625
DdeI CTNAG 2 cut(s) 106, 672
DpnI GATC 2 cut(s) 111, 196
DpnII GATC 2 cut(s) 109, 194
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 514
EcoT22I ATGCAT 1 cut(s) 256
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 3 cut(s) 69, 449, 628
FaqI GGGAC 1 cut(s) 296
FatI CATG 3 cut(s) 65, 445, 624
FauI CCCGC 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 1 cut(s) 35
GluI GCNGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 649
HapII CCGG 2 cut(s) 591, 614
Hin1II CATG 3 cut(s) 69, 449, 628
HinfI GANTC 3 cut(s) 10, 309, 331
HpaII CCGG 2 cut(s) 591, 614
Hpy188I TCNGA 3 cut(s) 88, 169, 724
Hpy188III TCNNGA 5 cut(s) 183, 328, 335, 446, 641
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 7 cut(s) 35, 174, 281, 334, 439, 706, 719
HpyCH4III ACNGT 3 cut(s) 96, 152, 346
HpyCH4V TGCA 4 cut(s) 99, 254, 458, 734
HpyF3I CTNAG 2 cut(s) 106, 672
Hsp92II CATG 3 cut(s) 69, 449, 628
Kzo9I GATC 2 cut(s) 109, 194
LmnI GCTCC 3 cut(s) 89, 185, 562
Lsp1109I GCAGC 1 cut(s) 574
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 319, 346, 526, 667
MalI GATC 2 cut(s) 111, 196
MboI GATC 2 cut(s) 109, 194
MboII GAAGA 2 cut(s) 16, 350
MhlI GDGCHC 2 cut(s) 119, 379
MluCI AATT 4 cut(s) 212, 229, 522, 781
MlyI GAGTC 2 cut(s) 4, 318
MnlI CCTC 3 cut(s) 130, 324, 535
Mph1103I ATGCAT 1 cut(s) 256
MseI TTAA 3 cut(s) 360, 402, 784
MslI CAYNNNNRTG 1 cut(s) 739
MspI CCGG 2 cut(s) 591, 614
MspR9I CCNGG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 516
NdeII GATC 2 cut(s) 109, 194
NlaIII CATG 3 cut(s) 69, 449, 628
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 346, 526, 667
NsiI ATGCAT 1 cut(s) 256
NspI RCATGY 1 cut(s) 628
PagI TCATGA 1 cut(s) 445
PfeI GAWTC 1 cut(s) 331
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 181
RseI CAYNNNNRTG 1 cut(s) 739
SaqAI TTAA 3 cut(s) 360, 402, 784
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 2 cut(s) 109, 194
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 119, 379
SetI ASST 9 cut(s) 23, 82, 105, 222, 326, 395, 472, 559, 589
SfcI CTRYAG 1 cut(s) 471
SmiMI CAYNNNNRTG 1 cut(s) 739
Sse9I AATT 4 cut(s) 212, 229, 522, 781
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 96, 152, 346
TaqI TCGA 2 cut(s) 119, 285
TasI AATT 4 cut(s) 212, 229, 522, 781
TfiI GAWTC 1 cut(s) 331
Tru1I TTAA 3 cut(s) 360, 402, 784
Tru9I TTAA 3 cut(s) 360, 402, 784
TscAI CASTG 5 cut(s) 101, 119, 460, 746, 770
TseFI GTSAC 3 cut(s) 346, 526, 667
TseI GCWGC 1 cut(s) 587
Tsp45I GTSAC 3 cut(s) 346, 526, 667
TspDTI ATGAA 4 cut(s) 17, 54, 501, 614
TspGWI ACGGA 3 cut(s) 137, 141, 579
TspRI CASTG 5 cut(s) 101, 119, 460, 746, 770
XceI RCATGY 1 cut(s) 628
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.