Rw1G003510

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
6497823 .. 6502555
4733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G003510.1

Sequence Viewer

Length: 1134 bp
ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTAGTTCTGGTTATGGCTCTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGACGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTCGGAGTTTTCTGGCTCCAAATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTCAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGATTACACTGCATTTGAGCCAGCTATAGATACTTTGAATGAAATCCAAGTATTTTTATCAGCAAACCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAATATGGAAATGATGGAATGAAAGCGGGAAGCTGTTCAAACAGAGCTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGGAAATCGATGGGCAAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGAGGGGGATCATTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGCATCTAAAACTGCAATTTACCATTATAAACACATATTTGGTTTGTTCATTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

377

Amino Acids

41.67

Weight (kDa)

5.18

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 75 - 358 1.1e-149 PI-PLC-like catalytic domain
PI-PLC_X PF26146 106 - 330 5.9e-24 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1103
AciI CCGC 4 cut(s) 140, 650, 788, 974
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 1 cut(s) 964
AfiI CCNNNNNNNGG 1 cut(s) 635
AjnI CCWGG 1 cut(s) 514
Alw21I GWGCWC 1 cut(s) 119
AlwI GGATC 1 cut(s) 1015
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 3 cut(s) 587, 883, 944
ApoI RAATTY 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 11, 345
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 3 cut(s) 574, 895, 931
BccI CCATC 4 cut(s) 83, 304, 770, 951
BcgI CGANNNNNNTGC 4 cut(s) 713, 747, 1049, 1083
BciT130I CCWGG 1 cut(s) 516
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 471, 1020
BisI GCNGC 4 cut(s) 588, 650, 884, 945
BlsI GCNGC 4 cut(s) 589, 651, 885, 946
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 516
BmsI GCATC 1 cut(s) 1087
BpiI GAAGAC 2 cut(s) 11, 345
Bsa29I ATCGAT 1 cut(s) 955
BsaJI CCNNGG 1 cut(s) 514
BsaWI WCCGGW 2 cut(s) 305, 613
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 2 cut(s) 611, 739
BseBI CCWGG 1 cut(s) 516
BseCI ATCGAT 1 cut(s) 955
BseDI CCNNGG 1 cut(s) 514
BseGI GGATG 1 cut(s) 1058
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 2 cut(s) 611, 739
BseRI GAGGAG 2 cut(s) 1006, 1014
BseXI GCAGC 3 cut(s) 574, 895, 931
BshFI GGCC 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 955
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 3 cut(s) 306, 591, 614
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 635
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 119, 379
Bsp143I GATC 3 cut(s) 109, 194, 1007
BspACI CCGC 4 cut(s) 140, 650, 788, 974
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 898
BspDI ATCGAT 1 cut(s) 955
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 1015
BsrI ACTGG 2 cut(s) 611, 739
BssECI CCNNGG 1 cut(s) 514
BssMI GATC 3 cut(s) 109, 194, 1007
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 96, 152, 346
BstC8I GCNNGC 4 cut(s) 82, 101, 468, 923
BstDEI CTNAG 3 cut(s) 106, 672, 906
BstF5I GGATG 1 cut(s) 1058
BstKTI GATC 3 cut(s) 112, 197, 1010
BstMBI GATC 3 cut(s) 109, 194, 1007
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 3 cut(s) 628, 925, 1074
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 471, 1020
BstV1I GCAGC 3 cut(s) 574, 895, 931
BstV2I GAAGAC 2 cut(s) 11, 345
Bsu15I ATCGAT 1 cut(s) 955
BsuRI GGCC 1 cut(s) 649
BsuTUI ATCGAT 1 cut(s) 955
BtsCI GGATG 1 cut(s) 1058
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 101, 119, 342, 453, 746
Cac8I GCNNGC 4 cut(s) 82, 101, 468, 923
ClaI ATCGAT 1 cut(s) 955
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 8 cut(s) 66, 446, 625, 751, 891, 922, 1067, 1071
DdeI CTNAG 3 cut(s) 106, 672, 906
DpnI GATC 3 cut(s) 111, 196, 1009
DpnII GATC 3 cut(s) 109, 194, 1007
EaeI YGGCCR 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 514
EcoT22I ATGCAT 2 cut(s) 256, 1072
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
FaqI GGGAC 1 cut(s) 296
FatI CATG 8 cut(s) 65, 445, 624, 750, 890, 921, 1066, 1070
FauI CCCGC 2 cut(s) 133, 781
FauNDI CATATG 1 cut(s) 1046
Fnu4HI GCNGC 4 cut(s) 588, 650, 884, 945
FokI GGATG 1 cut(s) 1065
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 4 cut(s) 588, 650, 884, 945
FspBI CTAG 1 cut(s) 35
GluI GCNGC 4 cut(s) 588, 650, 884, 945
HaeIII GGCC 1 cut(s) 649
HapII CCGG 3 cut(s) 306, 591, 614
Hin1II CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 4 cut(s) 10, 309, 331, 812
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 3 cut(s) 306, 591, 614
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 4 cut(s) 88, 169, 724, 907
Hpy188III TCNNGA 3 cut(s) 328, 335, 641
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 2 cut(s) 124, 820
HpyAV CCTTC 7 cut(s) 35, 174, 281, 334, 439, 706, 719
HpyCH4III ACNGT 3 cut(s) 96, 152, 346
HpyCH4V TGCA 7 cut(s) 99, 254, 458, 734, 1070, 1078, 1090
HpyF3I CTNAG 3 cut(s) 106, 672, 906
Hsp92II CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 3 cut(s) 109, 194, 1007
LmnI GCTCC 3 cut(s) 89, 185, 562
Lsp1109I GCAGC 3 cut(s) 574, 895, 931
LweI GCATC 1 cut(s) 1087
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 5 cut(s) 319, 346, 526, 667, 1055
MalI GATC 3 cut(s) 111, 196, 1009
MboI GATC 3 cut(s) 109, 194, 1007
MboII GAAGA 2 cut(s) 16, 350
MhlI GDGCHC 2 cut(s) 119, 379
MluCI AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1091
MlyI GAGTC 2 cut(s) 4, 318
MnlI CCTC 8 cut(s) 130, 324, 535, 831, 901, 984, 992, 995
Mph1103I ATGCAT 2 cut(s) 256, 1072
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 5 cut(s) 360, 855, 879, 927, 1132
MslI CAYNNNNRTG 2 cut(s) 739, 1071
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 3 cut(s) 306, 591, 614
MspR9I CCNGG 1 cut(s) 516
MvaI CCWGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 1046
NdeII GATC 3 cut(s) 109, 194, 1007
NlaIII CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 346, 526, 667
NsiI ATGCAT 2 cut(s) 256, 1072
NspI RCATGY 3 cut(s) 628, 925, 1074
PaeI GCATGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 331, 812
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 4 cut(s) 589, 651, 885, 946
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
PsiI TTATAA 1 cut(s) 1103
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 739, 1071
SaqAI TTAA 5 cut(s) 360, 855, 879, 927, 1132
SatI GCNGC 4 cut(s) 588, 650, 884, 945
Sau3AI GATC 3 cut(s) 109, 194, 1007
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 119, 379
SfaNI GCATC 1 cut(s) 1087
SfcI CTRYAG 2 cut(s) 471, 1020
SmiMI CAYNNNNRTG 2 cut(s) 739, 1071
SphI GCATGC 1 cut(s) 925
Sse9I AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1091
SsiI CCGC 4 cut(s) 140, 650, 788, 974
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 1 cut(s) 514
TaaI ACNGT 3 cut(s) 96, 152, 346
TaqI TCGA 3 cut(s) 119, 285, 955
TasI AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1091
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 2 cut(s) 331, 812
Tru1I TTAA 5 cut(s) 360, 855, 879, 927, 1132
Tru9I TTAA 5 cut(s) 360, 855, 879, 927, 1132
TscAI CASTG 5 cut(s) 101, 119, 349, 460, 746
TseFI GTSAC 3 cut(s) 346, 526, 667
TseI GCWGC 3 cut(s) 587, 883, 944
Tsp45I GTSAC 3 cut(s) 346, 526, 667
TspDTI ATGAA 6 cut(s) 17, 54, 501, 614, 797, 1113
TspGWI ACGGA 3 cut(s) 137, 141, 579
TspRI CASTG 5 cut(s) 101, 119, 349, 460, 746
Tth111I GACNNNGTC 1 cut(s) 344
XapI RAATTY 1 cut(s) 964
XceI RCATGY 3 cut(s) 628, 925, 1074
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 2 cut(s) 256, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.