Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Forward (+)

35453272 .. 35456247

Gene Structure 2976 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g46490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCCAGTTCTGGTTATGGCTCTTGCTGCGTTTTCATGTATTGTCATGGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCCGTGCTCGGTGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCGCTTTGGAGTATTCCGGCTCCAAATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAATTCTCTGCCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTATGCTATCGATGGAGAGCCATCTCATACTGGAATCCCTCGTGTTACCTTCACAAATCAAGAAGACACTGTCACTCAACAACTGAACAATGGAGTTCGAGCCCTAATGCTTGATACCTATGACTTTGATGATGGTGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACACTGCATTTGAGCCGGCTCTAGATACATTGAACGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAAATCGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAACGTTTTCAAAGCTGCAGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGACTGGCCGCTGGTTAGCGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCTGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAGTATGGGAATGATGGAATGAAAGCGGGAAGCTGTTCAAATAGAGGTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGACAGTCCCCATTAAGCAGCTCTCTTGTAAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGTTATACTGCTGCTGGAAACCGATGGGCTAATTTTGTTGCCGTCGATTTTTACAAGAGGAGTGCAGGGGGAGGATCGTTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAATGATGTCCATGCATGTGTGCCAGGATCAACTACACCCTGCAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.41

Weight (kDa)

5.1

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	75 - 358	2.1e-148	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	107 - 344	1.6e-23	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	140, 650, 788
AclI	AACGTT	1 cut(s)	576
AclWI	GGATC	3 cut(s)	104, 1015, 1090
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	1 cut(s)	744
AfiI	CCNNNNNNNGG	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	514, 1078
AluBI	AGCT	8 cut(s)	21, 103, 220, 557, 587, 795, 886, 1019
AluI	AGCT	8 cut(s)	21, 103, 220, 557, 587, 795, 886, 1019
Alw21I	GWGCWC	1 cut(s)	119
AlwI	GGATC	3 cut(s)	104, 1015, 1090
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	4 cut(s)	56, 587, 883, 944
ApoI	RAATTY	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	821
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	11, 345
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	4 cut(s)	43, 574, 895, 931
BccI	CCATC	6 cut(s)	83, 281, 304, 401, 770, 951
BceAI	ACGGC	1 cut(s)	959
BcgI	CGANNNNNNTGC	2 cut(s)	650, 684
BciT130I	CCWGG	2 cut(s)	516, 1080
BfaI	CTAG	1 cut(s)	473
BfmI	CTRYAG	2 cut(s)	588, 1020
BisI	GCNGC	5 cut(s)	57, 588, 650, 884, 945
BlsI	GCNGC	5 cut(s)	58, 589, 651, 885, 946
Bme1390I	CCNGG	2 cut(s)	516, 1080
BmiI	GGNNCC	2 cut(s)	33, 181
BmrFI	CCNGG	2 cut(s)	516, 1080
BpiI	GAAGAC	2 cut(s)	11, 345
Bsa29I	ATCGAT	1 cut(s)	285
BsaJI	CCNNGG	1 cut(s)	514
BsaWI	WCCGGW	1 cut(s)	613
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	1 cut(s)	466
Bse1I	ACTGG	6 cut(s)	35, 310, 611, 650, 739, 763
BseBI	CCWGG	2 cut(s)	516, 1080
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	1 cut(s)	1058
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	1 cut(s)	897
BseNI	ACTGG	6 cut(s)	35, 310, 611, 650, 739, 763
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	4 cut(s)	43, 574, 895, 931
BsgI	GTGCAG	1 cut(s)	1017
BshFI	GGCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	285
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	3 cut(s)	177, 467, 614
BslFI	GGGAC	2 cut(s)	857, 880
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmFI	GGGAC	2 cut(s)	857, 880
BsnI	GGCC	1 cut(s)	649
Bsp1286I	GDGCHC	2 cut(s)	119, 379
Bsp143I	GATC	4 cut(s)	109, 194, 1007, 1082
BspACI	CCGC	3 cut(s)	140, 650, 788
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	1 cut(s)	898
BspDI	ATCGAT	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	33, 181
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	3 cut(s)	104, 1015, 1090
BsrFI	RCCGGY	1 cut(s)	466
BsrI	ACTGG	6 cut(s)	35, 310, 611, 650, 739, 763
BssAI	RCCGGY	1 cut(s)	466
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	4 cut(s)	109, 194, 1007, 1082
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	2 cut(s)	516, 1080
Bst4CI	ACNGT	4 cut(s)	96, 152, 346, 871
BstC8I	GCNNGC	4 cut(s)	82, 101, 468, 923
BstDEI	CTNAG	2 cut(s)	106, 906
BstF5I	GGATG	1 cut(s)	1058
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	4 cut(s)	112, 197, 1010, 1085
BstMBI	GATC	4 cut(s)	109, 194, 1007, 1082
BstMWI	GCNNNNNNNGC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	516, 1080
BstNSI	RCATGY	3 cut(s)	628, 925, 1074
BstSCI	CCNGG	2 cut(s)	514, 1078
BstSFI	CTRYAG	2 cut(s)	588, 1020
BstV1I	GCAGC	4 cut(s)	43, 574, 895, 931
BstV2I	GAAGAC	2 cut(s)	11, 345
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	649
BsuTUI	ATCGAT	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	1058
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	4 cut(s)	101, 342, 453, 746
Cac8I	GCNNGC	4 cut(s)	82, 101, 468, 923
CfoI	GCGC	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	466
ClaI	ATCGAT	1 cut(s)	285
CviAII	CATG	8 cut(s)	66, 76, 446, 625, 751, 922, 1067, 1071
DdeI	CTNAG	2 cut(s)	106, 906
DpnI	GATC	4 cut(s)	111, 196, 1009, 1084
DpnII	GATC	4 cut(s)	109, 194, 1007, 1082
EaeI	YGGCCR	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	744
EcoRII	CCWGG	2 cut(s)	514, 1078
EcoT22I	ATGCAT	2 cut(s)	256, 1072
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	8 cut(s)	69, 79, 449, 628, 754, 925, 1070, 1074
FaqI	GGGAC	2 cut(s)	857, 880
FatI	CATG	8 cut(s)	65, 75, 445, 624, 750, 921, 1066, 1070
FauI	CCCGC	2 cut(s)	133, 781
FauNDI	CATATG	1 cut(s)	1046
Fnu4HI	GCNGC	5 cut(s)	57, 588, 650, 884, 945
FokI	GGATG	1 cut(s)	1065
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	5 cut(s)	57, 588, 650, 884, 945
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	57, 588, 650, 884, 945
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	3 cut(s)	177, 467, 614
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	8 cut(s)	69, 79, 449, 628, 754, 925, 1070, 1074
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	3 cut(s)	10, 309, 812
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	3 cut(s)	177, 467, 614
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	2 cut(s)	124, 856
Hpy188I	TCNGA	3 cut(s)	88, 724, 907
Hpy188III	TCNNGA	4 cut(s)	335, 473, 526, 641
Hpy8I	GTNNAC	2 cut(s)	124, 856
Hpy99I	CGWCG	2 cut(s)	820, 980
HpyAV	CCTTC	5 cut(s)	35, 334, 439, 706, 719
HpyCH4III	ACNGT	4 cut(s)	96, 152, 346, 871
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	8 cut(s)	99, 254, 458, 590, 734, 998, 1070, 1098
HpyF10VI	GCNNNNNNNGC	1 cut(s)	56
HpyF3I	CTNAG	2 cut(s)	106, 906
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	8 cut(s)	69, 79, 449, 628, 754, 925, 1070, 1074
HspAI	GCGC	1 cut(s)	162
KroI	GCCGGC	1 cut(s)	466
KroNI	GCCGGC	1 cut(s)	468
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	109, 194, 1007, 1082
LmnI	GCTCC	3 cut(s)	89, 185, 562
Lsp1109I	GCAGC	4 cut(s)	43, 574, 895, 931
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	3 cut(s)	319, 346, 526
MalI	GATC	4 cut(s)	111, 196, 1009, 1084
MboI	GATC	4 cut(s)	109, 194, 1007, 1082
MboII	GAAGA	2 cut(s)	16, 350
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	119, 379
MluCI	AATT	5 cut(s)	212, 229, 896, 901, 964
MlyI	GAGTC	1 cut(s)	4
MnlI	CCTC	8 cut(s)	130, 324, 535, 800, 831, 901, 984, 998
Mph1103I	ATGCAT	2 cut(s)	256, 1072
MroNI	GCCGGC	1 cut(s)	466
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	3 cut(s)	855, 879, 927
MslI	CAYNNNNRTG	2 cut(s)	739, 1071
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	3 cut(s)	177, 467, 614
MspR9I	CCNGG	2 cut(s)	516, 1080
MvaI	CCWGG	2 cut(s)	516, 1080
MwoI	GCNNNNNNNGC	1 cut(s)	56
NaeI	GCCGGC	1 cut(s)	468
NdeI	CATATG	1 cut(s)	1046
NdeII	GATC	4 cut(s)	109, 194, 1007, 1082
NgoMIV	GCCGGC	1 cut(s)	466
NlaIII	CATG	8 cut(s)	69, 79, 449, 628, 754, 925, 1070, 1074
NlaIV	GGNNCC	2 cut(s)	33, 181
NmuCI	GTSAC	2 cut(s)	346, 526
NsiI	ATGCAT	2 cut(s)	256, 1072
NspI	RCATGY	3 cut(s)	628, 925, 1074
PaeI	GCATGC	1 cut(s)	925
PdiI	GCCGGC	1 cut(s)	468
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	309, 812
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	58, 589, 651, 885, 946
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp1406I	AACGTT	1 cut(s)	576
Psp6I	CCWGG	2 cut(s)	514, 1078
PspGI	CCWGG	2 cut(s)	514, 1078
PspN4I	GGNNCC	2 cut(s)	33, 181
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	109
PsyI	GACNNNGTC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	739, 1071
SaqAI	TTAA	3 cut(s)	855, 879, 927
SatI	GCNGC	5 cut(s)	57, 588, 650, 884, 945
Sau3AI	GATC	4 cut(s)	109, 194, 1007, 1082
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	516, 1080
SduI	GDGCHC	2 cut(s)	119, 379
SfcI	CTRYAG	2 cut(s)	588, 1020
SmiMI	CAYNNNNRTG	2 cut(s)	739, 1071
SphI	GCATGC	1 cut(s)	925
Sse9I	AATT	5 cut(s)	212, 229, 896, 901, 964
SsiI	CCGC	3 cut(s)	140, 650, 788
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	514, 1078
TaaI	ACNGT	4 cut(s)	96, 152, 346, 871
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	285, 373, 978
TasI	AATT	5 cut(s)	212, 229, 896, 901, 964
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	309, 812
Tru1I	TTAA	3 cut(s)	855, 879, 927
Tru9I	TTAA	3 cut(s)	855, 879, 927
TscAI	CASTG	4 cut(s)	101, 349, 460, 746
TseFI	GTSAC	2 cut(s)	346, 526
TseI	GCWGC	4 cut(s)	56, 587, 883, 944
Tsp45I	GTSAC	2 cut(s)	346, 526
TspDTI	ATGAA	4 cut(s)	17, 54, 614, 797
TspGWI	ACGGA	3 cut(s)	102, 141, 579
TspRI	CASTG	4 cut(s)	101, 349, 460, 746
Tth111I	GACNNNGTC	1 cut(s)	344
XapI	RAATTY	1 cut(s)	896
XbaI	TCTAGA	1 cut(s)	472
XceI	RCATGY	3 cut(s)	628, 925, 1074
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	1 cut(s)	473
Zsp2I	ATGCAT	2 cut(s)	256, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.