Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000160

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Reverse (-)

34241 .. 47485

Gene Structure 13245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_160G00433670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGGACAGAATGATATCAAAGTTTGTGCAGACAGGTGTGCGTCTTCCAGCCGTTAAATTTCTGTGGCTTTTTAAGTCGGGGCAGTCGTGCTTGCTTCCAGCAAAAACAATGACGGTGACAGAGGTCGAAAGAGACTCTCGCCTGCACGCAAGAACGAATCATACCCGAGCAGTGAGCGGACTCAACGGCGAGAGAGGAAACATTGGAGGAAAACGGAACCAGAGGAAGGTGGTGCATGGTGAGCGACGCCACCAGGTGACCTGCACGATTCGCATCTCAGGGAGTCCACTCCCATTCAATAACTTCAAAGGTGGTTCATATAATTCCATAATTCATGCTGCCTTCTTTAATAGAGAAAAAGTGAAAAGACCAAAATCATGGAAGCTAGAATATGAAGACATGGAATGTCACCTCATCATTTGCTACACAAACTTGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGAAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCGGGATTGGCCGCTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCGAAACAAGAGAAGGAAAAATCCGAAGGATTGCATACCGAGTGGAACTACATGGTTGAAAACCGATGTAAGAACCAACTAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

252

Amino Acids

28.93

Weight (kDa)

9.43

Isoelectric Point (pI)

40.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	137 - 248	3.2e-48	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	147 - 246	4.3e-12	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	272
AccBSI	CCGCTC	1 cut(s)	180
AciI	CCGC	2 cut(s)	180, 623
AcoI	YGGCCR	1 cut(s)	620
AcsI	RAATTY	1 cut(s)	59
AcyI	GRCGYC	1 cut(s)	250
AdeI	CACNNNGTG	1 cut(s)	259
AfiI	CCNNNNNNNGG	2 cut(s)	229, 608
AgsI	TTSAA	6 cut(s)	301, 310, 457, 527, 556, 731
AjnI	CCWGG	1 cut(s)	255
AluBI	AGCT	4 cut(s)	388, 443, 530, 560
AluI	AGCT	4 cut(s)	388, 443, 530, 560
Alw26I	GTCTC	1 cut(s)	129
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	341, 560
ApoI	RAATTY	1 cut(s)	59
AsuHPI	GGTGA	4 cut(s)	130, 254, 271, 404
AsuII	TTCGAA	1 cut(s)	674
AvaI	CYCGRG	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	38, 405
BbvI	GCAGC	2 cut(s)	328, 547
BceAI	ACGGC	2 cut(s)	38, 205
BciT130I	CCWGG	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	444
BfuAI	ACCTGC	1 cut(s)	272
BisI	GCNGC	3 cut(s)	342, 561, 623
BlsI	GCNGC	3 cut(s)	343, 562, 624
Bme1390I	CCNGG	1 cut(s)	257
BmeT110I	CYCGRG	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	221
BmrFI	CCNGG	1 cut(s)	257
BmsI	GCATC	1 cut(s)	285
BoxI	GACNNNNGTC	1 cut(s)	125
BpiI	GAAGAC	2 cut(s)	38, 405
Bpu14I	TTCGAA	1 cut(s)	674
BsaBI	GATNNNNATC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	250
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 608
Bse1I	ACTGG	1 cut(s)	584
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	257
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	229, 608
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	328, 547
BsgI	GTGCAG	3 cut(s)	50, 131, 250
BshFI	GGCC	1 cut(s)	622
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	2 cut(s)	564, 587
BslI	CCNNNNNNNGG	2 cut(s)	229, 608
BsmAI	GTCTC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	622
BsoBI	CYCGRG	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	674
BspACI	CCGC	2 cut(s)	180, 623
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	1 cut(s)	293
BspLI	GGNNCC	1 cut(s)	221
BspMI	ACCTGC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	674
BsrBI	CCGCTC	1 cut(s)	180
BsrI	ACTGG	1 cut(s)	584
BssNI	GRCGYC	1 cut(s)	250
Bst2UI	CCWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	118
BstACI	GRCGYC	1 cut(s)	250
BstBI	TTCGAA	1 cut(s)	674
BstC8I	GCNNGC	4 cut(s)	95, 146, 150, 441
BstDEI	CTNAG	2 cut(s)	280, 645
BstEII	GGTNACC	1 cut(s)	259
BstMAI	GTCTC	1 cut(s)	129
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 273
BstNI	CCWGG	1 cut(s)	257
BstNSI	RCATGY	1 cut(s)	601
BstPAI	GACNNNNGTC	1 cut(s)	125
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	2 cut(s)	328, 547
BstV2I	GAAGAC	2 cut(s)	38, 405
BstXI	CCANNNNNNTGG	1 cut(s)	381
BsuRI	GGCC	1 cut(s)	622
BtsI	GCAGTG	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	272
Cac8I	GCNNGC	4 cut(s)	95, 146, 150, 441
CseI	GACGC	2 cut(s)	32, 258
CsiI	ACCWGGT	1 cut(s)	255
CviAII	CATG	6 cut(s)	239, 338, 381, 403, 598, 724
CviJI	RGCY	8 cut(s)	53, 70, 388, 443, 530, 560, 622, 658
CviKI_1	RGCY	8 cut(s)	53, 70, 388, 443, 530, 560, 622, 658
DdeI	CTNAG	2 cut(s)	280, 645
DraIII	CACNNNGTG	1 cut(s)	259
EaeI	YGGCCR	1 cut(s)	620
Eco32I	GATATC	1 cut(s)	18
Eco88I	CYCGRG	1 cut(s)	168
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoRII	CCWGG	1 cut(s)	255
EcoRV	GATATC	1 cut(s)	18
FaeI	CATG	6 cut(s)	242, 341, 384, 406, 601, 727
FatI	CATG	6 cut(s)	238, 337, 380, 402, 597, 723
Fnu4HI	GCNGC	3 cut(s)	342, 561, 623
Fsp4HI	GCNGC	3 cut(s)	342, 561, 623
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	3 cut(s)	342, 561, 623
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	2 cut(s)	564, 587
HgaI	GACGC	2 cut(s)	32, 258
Hin1I	GRCGYC	1 cut(s)	250
Hin1II	CATG	6 cut(s)	242, 341, 384, 406, 601, 727
HinfI	GANTC	5 cut(s)	137, 160, 183, 271, 286
HpaII	CCGG	2 cut(s)	564, 587
HphI	GGTGA	4 cut(s)	130, 254, 271, 404
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	1 cut(s)	697
Hpy188III	TCNNGA	1 cut(s)	614
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	4 cut(s)	223, 355, 679, 692
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	5 cut(s)	31, 148, 238, 267, 706
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 273
HpyF3I	CTNAG	2 cut(s)	280, 645
Hsp92I	GRCGYC	1 cut(s)	250
Hsp92II	CATG	6 cut(s)	242, 341, 384, 406, 601, 727
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	328, 547
LweI	GCATC	1 cut(s)	285
MabI	ACCWGGT	1 cut(s)	255
MaeI	CTAG	1 cut(s)	389
MaeIII	GTNAC	5 cut(s)	118, 259, 410, 499, 640
MbiI	CCGCTC	1 cut(s)	180
MboII	GAAGA	3 cut(s)	38, 410, 503
MluCI	AATT	5 cut(s)	59, 325, 333, 495, 754
MlyI	GAGTC	3 cut(s)	131, 177, 295
MnlI	CCTC	6 cut(s)	118, 191, 203, 219, 425, 508
MseI	TTAA	4 cut(s)	57, 75, 351, 757
MspA1I	CMGCKG	1 cut(s)	625
MspI	CCGG	2 cut(s)	564, 587
MspR9I	CCNGG	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	244, 273
NlaIII	CATG	6 cut(s)	242, 341, 384, 406, 601, 727
NlaIV	GGNNCC	1 cut(s)	221
NmuCI	GTSAC	5 cut(s)	118, 259, 410, 499, 640
NspI	RCATGY	1 cut(s)	601
NspV	TTCGAA	1 cut(s)	674
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PfeI	GAWTC	2 cut(s)	160, 271
PkrI	GCNGC	3 cut(s)	343, 562, 624
PleI	GAGTC	3 cut(s)	131, 177, 294
PpsI	GAGTC	3 cut(s)	131, 177, 294
PshAI	GACNNNNGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	255
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	255
PspN4I	GGNNCC	1 cut(s)	221
PsrI	GAACNNNNNNTAC	2 cut(s)	148, 180
SaqAI	TTAA	4 cut(s)	57, 75, 351, 757
SatI	GCNGC	3 cut(s)	342, 561, 623
SchI	GAGTC	3 cut(s)	131, 177, 295
ScrFI	CCNGG	1 cut(s)	257
SexAI	ACCWGGT	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	285
SfcI	CTRYAG	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	674
Sse9I	AATT	5 cut(s)	59, 325, 333, 495, 754
SsiI	CCGC	2 cut(s)	180, 623
SspMI	CTAG	1 cut(s)	389
StyD4I	CCNGG	1 cut(s)	255
TaaI	ACNGT	1 cut(s)	118
TaqI	TCGA	2 cut(s)	129, 674
TasI	AATT	5 cut(s)	59, 325, 333, 495, 754
TauI	GCSGC	1 cut(s)	625
TfiI	GAWTC	2 cut(s)	160, 271
Tru1I	TTAA	4 cut(s)	57, 75, 351, 757
Tru9I	TTAA	4 cut(s)	57, 75, 351, 757
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	5 cut(s)	118, 259, 410, 499, 640
TseI	GCWGC	2 cut(s)	341, 560
Tsp45I	GTSAC	5 cut(s)	118, 259, 410, 499, 640
TspDTI	ATGAA	5 cut(s)	309, 326, 411, 474, 587
TspGWI	ACGGA	2 cut(s)	232, 552
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	59
XceI	RCATGY	1 cut(s)	601
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.