Rroxscaffold_2G00086030

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
8322609 .. 8323701
1093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086030.1

Sequence Viewer

Length: 426 bp
ATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGCGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAAGAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACGAGTATGGAGATGATGGAATGGTAGCGGGAAGCTGTTCAAACAGAGGTGACTCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACCATTTTGAGTCATTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTGGTTAGCAAGCTTAACACTTGCTGTGGTGCTGCTGGAAACCGATGGGCGAATTTTGTTGCGGTTGATTTTTATAAGAGGAGTGGAGGGGGGGATCGTTTCAAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.91

Weight (kDa)

5.82

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 1 - 137 5.4e-66 PI-PLC-like catalytic domain
PI-PLC_X PF26146 14 - 130 3e-08 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 390
AciI CCGC 3 cut(s) 53, 191, 377
AclWI GGATC 1 cut(s) 417
AcoI YGGCCR 1 cut(s) 50
AcsI RAATTY 1 cut(s) 367
AfiI CCNNNNNNNGG 1 cut(s) 38
AgsI TTSAA 5 cut(s) 105, 161, 204, 304, 418
AluBI AGCT 4 cut(s) 198, 289, 328, 421
AluI AGCT 4 cut(s) 198, 289, 328, 421
AlwI GGATC 1 cut(s) 417
AoxI GGCC 1 cut(s) 50
ApeKI GCWGC 2 cut(s) 286, 347
ApoI RAATTY 1 cut(s) 367
Asp700I GAANNNNTTC 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 224
BbvI GCAGC 2 cut(s) 298, 334
BccI CCATC 2 cut(s) 173, 354
BcgI CGANNNNNNTGC 4 cut(s) 53, 87, 116, 150
BfmI CTRYAG 1 cut(s) 422
BisI GCNGC 3 cut(s) 53, 287, 348
BlsI GCNGC 3 cut(s) 54, 288, 349
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 2 cut(s) 14, 142
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 2 cut(s) 14, 142
BseRI GAGGAG 1 cut(s) 409
BseXI GCAGC 2 cut(s) 298, 334
BshFI GGCC 1 cut(s) 52
BsiSI CCGG 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 409
BspACI CCGC 3 cut(s) 53, 191, 377
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 301
BspPI GGATC 1 cut(s) 417
BsrI ACTGG 2 cut(s) 14, 142
BssMI GATC 1 cut(s) 409
Bst6I CTCTTC 1 cut(s) 105
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 1 cut(s) 309
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstNSI RCATGY 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 422
BstV1I GCAGC 2 cut(s) 298, 334
BsuRI GGCC 1 cut(s) 52
BtsIMutI CAGTG 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 326
CviAII CATG 3 cut(s) 28, 154, 294
CviJI RGCY 6 cut(s) 52, 88, 198, 289, 328, 421
CviKI_1 RGCY 6 cut(s) 52, 88, 198, 289, 328, 421
DdeI CTNAG 1 cut(s) 309
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
EaeI YGGCCR 1 cut(s) 50
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
FaeI CATG 3 cut(s) 31, 157, 297
FaiI YATR 8 cut(s) 29, 68, 139, 155, 171, 295, 390, 424
FatI CATG 3 cut(s) 27, 153, 293
FauI CCCGC 1 cut(s) 184
Fnu4HI GCNGC 3 cut(s) 53, 287, 348
Fsp4HI GCNGC 3 cut(s) 53, 287, 348
GluI GCNGC 3 cut(s) 53, 287, 348
HaeIII GGCC 1 cut(s) 52
HapII CCGG 1 cut(s) 17
Hin1II CATG 3 cut(s) 31, 157, 297
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 2 cut(s) 215, 269
HpaI GTTAAC 1 cut(s) 259
HpaII CCGG 1 cut(s) 17
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 127, 310
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 223
HpyAV CCTTC 2 cut(s) 109, 122
HpyCH4V TGCA 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 309
Hsp92II CATG 3 cut(s) 31, 157, 297
KspAI GTTAAC 1 cut(s) 259
Kzo9I GATC 1 cut(s) 409
LpnPI CCDG 5 cut(s) 29, 30, 41, 155, 336
Lsp1109I GCAGC 2 cut(s) 298, 334
MaeIII GTNAC 1 cut(s) 212
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 1 cut(s) 122
MluCI AATT 3 cut(s) 299, 304, 367
MlyI GAGTC 2 cut(s) 209, 278
MnlI CCTC 5 cut(s) 203, 234, 304, 387, 395
MroXI GAANNNNTTC 1 cut(s) 199
MseI TTAA 3 cut(s) 258, 282, 330
MslI CAYNNNNRTG 1 cut(s) 142
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 1 cut(s) 17
NdeII GATC 1 cut(s) 409
NlaIII CATG 3 cut(s) 31, 157, 297
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 31
PdmI GAANNNNTTC 1 cut(s) 199
PkrI GCNGC 3 cut(s) 54, 288, 349
PleI GAGTC 2 cut(s) 209, 277
PpsI GAGTC 2 cut(s) 209, 277
PsiI TTATAA 1 cut(s) 390
RseI CAYNNNNRTG 1 cut(s) 142
SaqAI TTAA 3 cut(s) 258, 282, 330
SatI GCNGC 3 cut(s) 53, 287, 348
Sau3AI GATC 1 cut(s) 409
SchI GAGTC 2 cut(s) 209, 278
SetI ASST 5 cut(s) 200, 214, 291, 330, 423
SfcI CTRYAG 1 cut(s) 422
SmiMI CAYNNNNRTG 1 cut(s) 142
Sse9I AATT 3 cut(s) 299, 304, 367
SsiI CCGC 3 cut(s) 53, 191, 377
TasI AATT 3 cut(s) 299, 304, 367
TauI GCSGC 1 cut(s) 55
Tru1I TTAA 3 cut(s) 258, 282, 330
Tru9I TTAA 3 cut(s) 258, 282, 330
TscAI CASTG 1 cut(s) 149
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 286, 347
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 149
XapI RAATTY 1 cut(s) 367
XceI RCATGY 1 cut(s) 31
XmnI GAANNNNTTC 1 cut(s) 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.