Rh1CG043400

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001750
Physical Location & Seq
Reverse (-)
8090592 .. 8095630
5039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG043400.1

Sequence Viewer

Length: 1203 bp
ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTAGTTCTGGTTATGGCTTTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGACGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTCGGAGTTTTCTGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTATTACCTTCACGAATCAAGAAGATACTGTCACTCAACAACTTAACAATGGAGTTAGAGCTCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTATATGGTTGAAAACCAGTATGGAAATGATGGAATGAAAGCGGGAAGCTGTTCAAACAGAGCTGAATCGTCTCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGGAAACCGATGGGCAAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGAGGGGGATCATTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGGGGCTGCCAAGGTGTCTGTTGCCACTGGAAGTGCCTTTATGTGATGAGTGGGACAATTGGGCGTGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

44.21

Weight (kDa)

4.92

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 75 - 358 1.1e-149 PI-PLC-like catalytic domain
PI-PLC_X PF26146 106 - 330 4.1e-24 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 140, 650, 788, 974
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 1 cut(s) 647
AcsI RAATTY 1 cut(s) 964
AfiI CCNNNNNNNGG 1 cut(s) 635
AjnI CCWGG 1 cut(s) 514
Alw21I GWGCWC 2 cut(s) 119, 379
Alw26I GTCTC 1 cut(s) 822
AlwI GGATC 1 cut(s) 1015
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 5 cut(s) 587, 883, 944, 1081, 1157
ApoI RAATTY 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 796
BanII GRGCYC 1 cut(s) 379
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 119, 379
BbvI GCAGC 5 cut(s) 574, 895, 931, 1068, 1144
BccI CCATC 4 cut(s) 83, 304, 770, 951
BcgI CGANNNNNNTGC 4 cut(s) 713, 747, 1049, 1083
BciT130I CCWGG 1 cut(s) 516
BcoDI GTCTC 1 cut(s) 822
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 471, 1020
BisI GCNGC 6 cut(s) 588, 650, 884, 945, 1082, 1158
BlsI GCNGC 6 cut(s) 589, 651, 885, 946, 1083, 1159
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 516
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 514, 1085
BsaWI WCCGGW 2 cut(s) 305, 613
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 4 cut(s) 611, 739, 763, 1107
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 514, 1085
BseGI GGATG 1 cut(s) 1058
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 4 cut(s) 611, 739, 763, 1107
BseRI GAGGAG 3 cut(s) 810, 1006, 1014
BseXI GCAGC 5 cut(s) 574, 895, 931, 1068, 1144
BshFI GGCC 1 cut(s) 649
BsiHKAI GWGCWC 2 cut(s) 119, 379
BsiSI CCGG 3 cut(s) 306, 591, 614
BslFI GGGAC 2 cut(s) 296, 1142
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 1 cut(s) 822
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 2 cut(s) 296, 1142
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 119, 379
Bsp143I GATC 3 cut(s) 109, 194, 1007
BspACI CCGC 4 cut(s) 140, 650, 788, 974
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 898
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 1015
BsrI ACTGG 4 cut(s) 611, 739, 763, 1107
BssECI CCNNGG 2 cut(s) 514, 1085
BssMI GATC 3 cut(s) 109, 194, 1007
BssT1I CCWWGG 1 cut(s) 1085
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 96, 152, 346
BstC8I GCNNGC 5 cut(s) 82, 101, 468, 923, 1162
BstDEI CTNAG 3 cut(s) 106, 672, 906
BstF5I GGATG 1 cut(s) 1058
BstKTI GATC 3 cut(s) 112, 197, 1010
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 3 cut(s) 109, 194, 1007
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 3 cut(s) 628, 925, 1074
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 471, 1020
BstV1I GCAGC 5 cut(s) 574, 895, 931, 1068, 1144
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 649
BtsCI GGATG 1 cut(s) 1058
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 101, 119, 453, 746, 1100
Cac8I GCNNGC 5 cut(s) 82, 101, 468, 923, 1162
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 8 cut(s) 66, 446, 625, 891, 922, 1067, 1071, 1200
DdeI CTNAG 3 cut(s) 106, 672, 906
DpnI GATC 3 cut(s) 111, 196, 1009
DpnII GATC 3 cut(s) 109, 194, 1007
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 647
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 1085
Eco24I GRGCYC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 1085
EcoT22I ATGCAT 2 cut(s) 256, 1072
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 1085
Esp3I CGTCTC 1 cut(s) 822
FaeI CATG 8 cut(s) 69, 449, 628, 894, 925, 1070, 1074, 1203
FaqI GGGAC 2 cut(s) 296, 1142
FatI CATG 8 cut(s) 65, 445, 624, 890, 921, 1066, 1070, 1199
FauI CCCGC 2 cut(s) 133, 781
FauNDI CATATG 1 cut(s) 1046
Fnu4HI GCNGC 6 cut(s) 588, 650, 884, 945, 1082, 1158
FokI GGATG 1 cut(s) 1065
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 6 cut(s) 588, 650, 884, 945, 1082, 1158
FspBI CTAG 1 cut(s) 35
GluI GCNGC 6 cut(s) 588, 650, 884, 945, 1082, 1158
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 649
HapII CCGG 3 cut(s) 306, 591, 614
Hin1II CATG 8 cut(s) 69, 449, 628, 894, 925, 1070, 1074, 1203
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 5 cut(s) 10, 309, 331, 812, 1144
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 3 cut(s) 306, 591, 614
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 5 cut(s) 88, 169, 724, 907, 1168
Hpy188III TCNNGA 4 cut(s) 183, 328, 335, 641
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 7 cut(s) 35, 174, 281, 334, 439, 706, 719
HpyCH4III ACNGT 3 cut(s) 96, 152, 346
HpyCH4V TGCA 5 cut(s) 99, 254, 458, 734, 1070
HpyF3I CTNAG 3 cut(s) 106, 672, 906
Hsp92II CATG 8 cut(s) 69, 449, 628, 894, 925, 1070, 1074, 1203
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 3 cut(s) 109, 194, 1007
LmnI GCTCC 3 cut(s) 89, 185, 562
Lsp1109I GCAGC 5 cut(s) 574, 895, 931, 1068, 1144
MaeI CTAG 1 cut(s) 35
MaeIII GTNAC 4 cut(s) 346, 526, 667, 1055
MalI GATC 3 cut(s) 111, 196, 1009
MboI GATC 3 cut(s) 109, 194, 1007
MboII GAAGA 2 cut(s) 16, 350
MfeI CAATTG 1 cut(s) 1132
MhlI GDGCHC 2 cut(s) 119, 379
MluCI AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1132
MlyI GAGTC 2 cut(s) 4, 318
MnlI CCTC 8 cut(s) 130, 324, 535, 831, 901, 984, 992, 995
Mph1103I ATGCAT 2 cut(s) 256, 1072
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 5 cut(s) 360, 402, 855, 879, 927
MslI CAYNNNNRTG 2 cut(s) 739, 1071
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 3 cut(s) 306, 591, 614
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 1132
MvaI CCWGG 1 cut(s) 516
NdeI CATATG 1 cut(s) 1046
NdeII GATC 3 cut(s) 109, 194, 1007
NlaIII CATG 8 cut(s) 69, 449, 628, 894, 925, 1070, 1074, 1203
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 3 cut(s) 346, 526, 667
NsiI ATGCAT 2 cut(s) 256, 1072
NspI RCATGY 3 cut(s) 628, 925, 1074
PaeI GCATGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 3 cut(s) 331, 812, 1144
PkrI GCNGC 6 cut(s) 589, 651, 885, 946, 1083, 1159
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 181
RseI CAYNNNNRTG 2 cut(s) 739, 1071
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 5 cut(s) 360, 402, 855, 879, 927
SatI GCNGC 6 cut(s) 588, 650, 884, 945, 1082, 1158
Sau3AI GATC 3 cut(s) 109, 194, 1007
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 119, 379
SfcI CTRYAG 2 cut(s) 471, 1020
SmiMI CAYNNNNRTG 2 cut(s) 739, 1071
SphI GCATGC 1 cut(s) 925
Sse9I AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1132
SsiI CCGC 4 cut(s) 140, 650, 788, 974
SspI AATATT 1 cut(s) 1192
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 1 cut(s) 379
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 1085
TaaI ACNGT 3 cut(s) 96, 152, 346
TaqI TCGA 2 cut(s) 119, 285
TasI AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1132
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 3 cut(s) 331, 812, 1144
Tru1I TTAA 5 cut(s) 360, 402, 855, 879, 927
Tru9I TTAA 5 cut(s) 360, 402, 855, 879, 927
TscAI CASTG 5 cut(s) 101, 119, 460, 746, 1107
TseFI GTSAC 3 cut(s) 346, 526, 667
TseI GCWGC 5 cut(s) 587, 883, 944, 1081, 1157
Tsp45I GTSAC 3 cut(s) 346, 526, 667
TspDTI ATGAA 5 cut(s) 17, 54, 501, 614, 797
TspGWI ACGGA 3 cut(s) 137, 141, 579
TspRI CASTG 5 cut(s) 101, 119, 460, 746, 1107
XapI RAATTY 1 cut(s) 964
XceI RCATGY 3 cut(s) 628, 925, 1074
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 1 cut(s) 35
Zsp2I ATGCAT 2 cut(s) 256, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.