Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Forward (+)

83392161 .. 83403579

Gene Structure 11419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG602100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTACTTCTGGTTATGTCTCTTGCTGTGTTTTCTTGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGATGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTTGGAGTTTTCAGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAGTTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCCATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGACAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTAAACGAAATCCAAGCATTTTTATCAGCAAATCCAGGAGAAATCGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGACTGACAAATGTTTTCAAATCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGAGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAGTATGGAGACAATGGAATGAAAGCGGGAAGCTGTTCAAACAGAGGTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGCTATTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTATCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGGAAACCGGTGGGCGAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGGGGGGGATCGTTTCAAGCTACAGACACTCTCAATGGGGAACTCATATGTGGATGTAACGATGTCCATGCATGTGCGAGTTCGGGAACTGAGATTGTGAGTCTCAAGGAGGCAGGTTTGGTCCTCGATCCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

378

Amino Acids

41.59

Weight (kDa)

5.04

Isoelectric Point (pI)

35.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	76 - 358	9e-149	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	106 - 330	4.8e-24	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1103
AciI	CCGC	4 cut(s)	140, 650, 788, 974
AclWI	GGATC	2 cut(s)	1015, 1121
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	964
AfiI	CCNNNNNNNGG	1 cut(s)	635
AgeI	ACCGGT	1 cut(s)	954
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	9 cut(s)	21, 80, 103, 220, 470, 557, 795, 886, 1019
AluI	AGCT	9 cut(s)	21, 80, 103, 220, 470, 557, 795, 886, 1019
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	3 cut(s)	54, 765, 1106
AlwI	GGATC	2 cut(s)	1015, 1121
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	2 cut(s)	883, 944
ApoI	RAATTY	1 cut(s)	964
AsiGI	ACCGGT	1 cut(s)	954
Asp700I	GAANNNNTTC	1 cut(s)	796
AspS9I	GGNCC	1 cut(s)	1120
AsuHPI	GGTGA	1 cut(s)	821
AvaII	GGWCC	1 cut(s)	1120
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	11, 345
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	895, 931
BccI	CCATC	4 cut(s)	83, 115, 290, 304
BcgI	CGANNNNNNTGC	4 cut(s)	713, 747, 1049, 1083
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	3 cut(s)	54, 765, 1106
BfmI	CTRYAG	2 cut(s)	471, 1020
BfuAI	ACCTGC	1 cut(s)	1103
BisI	GCNGC	3 cut(s)	650, 884, 945
BlsI	GCNGC	3 cut(s)	651, 885, 946
Bme1390I	CCNGG	1 cut(s)	516
Bme18I	GGWCC	1 cut(s)	1120
BmgT120I	GGNCC	1 cut(s)	1120
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	516
BpiI	GAAGAC	2 cut(s)	11, 345
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	1088
BsaWI	WCCGGW	3 cut(s)	305, 613, 954
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse118I	RCCGGY	1 cut(s)	954
Bse1I	ACTGG	3 cut(s)	611, 739, 763
Bse3DI	GCAATG	1 cut(s)	842
BseBI	CCWGG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	1058
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMI	GCAATG	1 cut(s)	842
BseMII	CTCAG	2 cut(s)	897, 1080
BseNI	ACTGG	3 cut(s)	611, 739, 763
BseRI	GAGGAG	1 cut(s)	1006
BseXI	GCAGC	2 cut(s)	895, 931
BshFI	GGCC	1 cut(s)	649
BshTI	ACCGGT	1 cut(s)	954
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	4 cut(s)	306, 591, 614, 955
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	3 cut(s)	54, 765, 1106
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	649
Bsp1286I	GDGCHC	2 cut(s)	119, 379
Bsp143I	GATC	4 cut(s)	109, 194, 1007, 1126
BspACI	CCGC	4 cut(s)	140, 650, 788, 974
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	2 cut(s)	898, 1081
BspLI	GGNNCC	1 cut(s)	181
BspMI	ACCTGC	1 cut(s)	1103
BspPI	GGATC	2 cut(s)	1015, 1121
BsrDI	GCAATG	1 cut(s)	842
BsrFI	RCCGGY	1 cut(s)	954
BsrI	ACTGG	3 cut(s)	611, 739, 763
BssAI	RCCGGY	1 cut(s)	954
BssMI	GATC	4 cut(s)	109, 194, 1007, 1126
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	96, 152, 346
BstC8I	GCNNGC	4 cut(s)	82, 101, 468, 923
BstDEI	CTNAG	3 cut(s)	106, 906, 1089
BstF5I	GGATG	1 cut(s)	1058
BstKTI	GATC	4 cut(s)	112, 197, 1010, 1129
BstMAI	GTCTC	3 cut(s)	54, 765, 1106
BstMBI	GATC	4 cut(s)	109, 194, 1007, 1126
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	3 cut(s)	628, 925, 1074
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	2 cut(s)	471, 1020
BstV1I	GCAGC	2 cut(s)	895, 931
BstV2I	GAAGAC	2 cut(s)	11, 345
BsuRI	GGCC	1 cut(s)	649
BtsCI	GGATG	1 cut(s)	1058
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	6 cut(s)	101, 119, 342, 453, 746, 1132
BveI	ACCTGC	1 cut(s)	1103
Cac8I	GCNNGC	4 cut(s)	82, 101, 468, 923
Cfr10I	RCCGGY	1 cut(s)	954
Cfr13I	GGNCC	1 cut(s)	1120
CspAI	ACCGGT	1 cut(s)	954
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviAII	CATG	7 cut(s)	446, 625, 751, 891, 922, 1067, 1071
DdeI	CTNAG	3 cut(s)	106, 906, 1089
DpnI	GATC	4 cut(s)	111, 196, 1009, 1128
DpnII	GATC	4 cut(s)	109, 194, 1007, 1126
DraI	TTTAAA	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	379
Eco47I	GGWCC	1 cut(s)	1120
EcoRII	CCWGG	1 cut(s)	514
EcoT22I	ATGCAT	2 cut(s)	256, 1072
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	7 cut(s)	445, 624, 750, 890, 921, 1066, 1070
FauI	CCCGC	2 cut(s)	133, 781
FauNDI	CATATG	1 cut(s)	1046
Fnu4HI	GCNGC	3 cut(s)	650, 884, 945
FokI	GGATG	1 cut(s)	1065
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	3 cut(s)	650, 884, 945
GluI	GCNGC	3 cut(s)	650, 884, 945
GsuI	CTGGAG	1 cut(s)	166
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	4 cut(s)	306, 591, 614, 955
Hin1II	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	5 cut(s)	10, 309, 331, 812, 1099
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	4 cut(s)	306, 591, 614, 955
HphI	GGTGA	1 cut(s)	821
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	3 cut(s)	88, 724, 907
Hpy188III	TCNNGA	6 cut(s)	183, 328, 335, 526, 641, 1083
Hpy8I	GTNNAC	1 cut(s)	856
Hpy99I	CGWCG	1 cut(s)	820
HpyAV	CCTTC	6 cut(s)	35, 281, 334, 439, 706, 719
HpyCH4III	ACNGT	3 cut(s)	96, 152, 346
HpyCH4V	TGCA	5 cut(s)	99, 254, 458, 734, 1070
HpyF3I	CTNAG	3 cut(s)	106, 906, 1089
Hsp92II	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	109, 194, 1007, 1126
LmnI	GCTCC	3 cut(s)	89, 185, 562
Lsp1109I	GCAGC	2 cut(s)	895, 931
MaeIII	GTNAC	4 cut(s)	319, 346, 526, 1055
MalI	GATC	4 cut(s)	111, 196, 1009, 1128
MboI	GATC	4 cut(s)	109, 194, 1007, 1126
MboII	GAAGA	2 cut(s)	16, 350
MhlI	GDGCHC	2 cut(s)	119, 379
MluCI	AATT	4 cut(s)	212, 896, 901, 964
MlyI	GAGTC	3 cut(s)	4, 318, 1108
Mph1103I	ATGCAT	2 cut(s)	256, 1072
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
MslI	CAYNNNNRTG	2 cut(s)	739, 1071
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	4 cut(s)	306, 591, 614, 955
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	1046
NdeII	GATC	4 cut(s)	109, 194, 1007, 1126
NlaIII	CATG	7 cut(s)	449, 628, 754, 894, 925, 1070, 1074
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	2 cut(s)	346, 526
NsiI	ATGCAT	2 cut(s)	256, 1072
NspI	RCATGY	3 cut(s)	628, 925, 1074
PaeI	GCATGC	1 cut(s)	925
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	2 cut(s)	331, 812
PflFI	GACNNNGTC	1 cut(s)	344
PfoI	TCCNGGA	1 cut(s)	514
PinAI	ACCGGT	1 cut(s)	954
PkrI	GCNGC	3 cut(s)	651, 885, 946
PleI	GAGTC	3 cut(s)	4, 317, 1107
PpsI	GAGTC	3 cut(s)	4, 317, 1107
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	181
PspPI	GGNCC	1 cut(s)	1120
PsyI	GACNNNGTC	1 cut(s)	344
RseI	CAYNNNNRTG	2 cut(s)	739, 1071
SaqAI	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
SatI	GCNGC	3 cut(s)	650, 884, 945
Sau3AI	GATC	4 cut(s)	109, 194, 1007, 1126
Sau96I	GGNCC	1 cut(s)	1120
SchI	GAGTC	3 cut(s)	4, 318, 1108
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	2 cut(s)	119, 379
SfcI	CTRYAG	2 cut(s)	471, 1020
SinI	GGWCC	1 cut(s)	1120
SmiMI	CAYNNNNRTG	2 cut(s)	739, 1071
SmlI	CTYRAG	1 cut(s)	1103
SmoI	CTYRAG	1 cut(s)	1103
SphI	GCATGC	1 cut(s)	925
Sse9I	AATT	4 cut(s)	212, 896, 901, 964
SsiI	CCGC	4 cut(s)	140, 650, 788, 974
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	3 cut(s)	96, 152, 346
TaqI	TCGA	3 cut(s)	119, 285, 1125
TasI	AATT	4 cut(s)	212, 896, 901, 964
TauI	GCSGC	1 cut(s)	652
TfiI	GAWTC	2 cut(s)	331, 812
Tru1I	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
Tru9I	TTAA	6 cut(s)	360, 402, 482, 855, 879, 927
TscAI	CASTG	5 cut(s)	101, 119, 349, 460, 746
TseFI	GTSAC	2 cut(s)	346, 526
TseI	GCWGC	2 cut(s)	883, 944
Tsp45I	GTSAC	2 cut(s)	346, 526
TspDTI	ATGAA	3 cut(s)	17, 614, 797
TspGWI	ACGGA	2 cut(s)	141, 579
TspRI	CASTG	5 cut(s)	101, 119, 349, 460, 746
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	1 cut(s)	1120
XapI	RAATTY	1 cut(s)	964
XceI	RCATGY	3 cut(s)	628, 925, 1074
XmnI	GAANNNNTTC	1 cut(s)	796
Zsp2I	ATGCAT	2 cut(s)	256, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.