Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Reverse (-)

24003021 .. 24005588

Gene Structure 2568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G250100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGAAGAGTCGGCAGAACTTGCTTTTGATGATCATAGCTAGTGCAGCGGTTTTCAGCGTTGCCACAGCTTGCTCCAACGGACAGTGCAAGCTTTTAGAACAATGCTCAACAGACGGAGATTGTGAGGCAGGGCTTTTCTGCTTCTCTTGCCCAGAAGCCTTTTCCGGCTCTAGATGTATAAGATCAACCACTACAGACCAATTCAAGCTTTTGAACAATTCTCTACCATTCAACAAGTATGCGTTTTTGACAACCCACAATGCTTTTGCTATTGAGGGAGAGCCTTCTCATACTGGAATTCCTCGCGTTACCTTCACAAATCAAGAAGATACTATCACTCAACAGCTAAATAACGGGGTTCGAGCCTTAATGCTCGATACGTATGATTTTAAAGGAGATGTGTGGTTGTGCCACTCTTTCAATGGAAAATGCCATGACATTACTGCATTTGAACCAGCTATAGATACCCTCAAGGAAATTGAAGCATTTTTATCAGCCAACCCAGCAGAAATTGTCACATTGATTTTAGAGGACTATGTTGAAGCTCCAAATGGATTGACAAATGTCTTCAAAGCTTCTGGGCTGATGAATTACTGGTTTCCAGTGACAAGCATGCCCAAAAATGGTCAGGACTGGCCACTGGTTAGTGACATGGTTGCTAAGAACCAAAGACTACTTGTATTTACTTCAAAAAGTGCCAAGGAACAATCTGAAGGGATTGCATACCAATGGAACTACATGGTTGAAAACCAATATGGGGATGGTGGAATGAAGCCAGGAAATTGTCCAAATAGAGGAGAATCAGCACCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAATTATTTCTCTTCCATTCCCATCAAGCAAGTCAGCTGTGCAATTAACTCTGGGGATCTCATTAAAATGCTCTACACTTGTTATGGTGCGGCTGGCAACCGATGGGCTAACTTCGTCGCTGTCGATTTTTACAAGAGGAGTGAAGGCGGAGGGTCGTTTCAAGCTTTAGACAACCTGAATGGGGAGCTCTTGTGTGGATGCAATGATGTACATGCATGTGTGCCAGGATCACCTCCAGGGTCTTGCCAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

366

Amino Acids

39.9

Weight (kDa)

5.12

Isoelectric Point (pI)

37.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	306
AciI	CCGC	3 cut(s)	47, 932, 990
AclWI	GGATC	2 cut(s)	906, 1078
AcoI	YGGCCR	1 cut(s)	635
AcsI	RAATTY	1 cut(s)	297
AcuI	CTGAAG	1 cut(s)	732
AfaI	GTAC	1 cut(s)	1053
AfiI	CCNNNNNNNGG	4 cut(s)	623, 757, 794, 1024
AjnI	CCWGG	3 cut(s)	775, 1066, 1078
Alw21I	GWGCWC	1 cut(s)	1032
AlwI	GGATC	2 cut(s)	906, 1078
AoxI	GGCC	1 cut(s)	635
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	1 cut(s)	297
AsuHPI	GGTGA	1 cut(s)	1065
BalI	TGGCCA	1 cut(s)	637
BanII	GRGCYC	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	559
Bbv12I	GWGCWC	1 cut(s)	1032
BbvI	GCAGC	1 cut(s)	56
BccI	CCATC	3 cut(s)	755, 872, 939
BciT130I	CCWGG	3 cut(s)	777, 1068, 1080
BclI	TGATCA	1 cut(s)	30
BfaI	CTAG	2 cut(s)	39, 171
BfmI	CTRYAG	2 cut(s)	192, 459
BisI	GCNGC	2 cut(s)	45, 933
BlsI	GCNGC	2 cut(s)	46, 934
Bme1390I	CCNGG	3 cut(s)	777, 1068, 1080
BmrFI	CCNGG	3 cut(s)	777, 1068, 1080
BmsI	GCATC	1 cut(s)	1031
BoxI	GACNNNNGTC	1 cut(s)	563
BpiI	GAAGAC	1 cut(s)	559
BpmI	CTGGAG	1 cut(s)	1062
BpuEI	CTTGAG	1 cut(s)	455
BsaAI	YACGTR	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	699, 1079
BsaXI	ACNNNNNCTCC	2 cut(s)	1019, 1049
Bsc4I	CCNNNNNNNGG	4 cut(s)	623, 757, 794, 1024
Bse1I	ACTGG	5 cut(s)	298, 599, 602, 638, 645
Bse3DI	GCAATG	1 cut(s)	1051
BseBI	CCWGG	3 cut(s)	777, 1068, 1080
BseDI	CCNNGG	2 cut(s)	699, 1079
BseGI	GGATG	2 cut(s)	766, 1046
BseLI	CCNNNNNNNGG	4 cut(s)	623, 757, 794, 1024
BseMI	GCAATG	1 cut(s)	1051
BseNI	ACTGG	5 cut(s)	298, 599, 602, 638, 645
BseRI	GAGGAG	2 cut(s)	810, 994
BseXI	GCAGC	1 cut(s)	56
BseYI	CCCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	63
Bsh1236I	CGCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	637
BsiHKAI	GWGCWC	1 cut(s)	1032
BsiSI	CCGG	1 cut(s)	165
BslI	CCNNNNNNNGG	4 cut(s)	623, 757, 794, 1024
BsnI	GGCC	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	1032
Bsp1407I	TGTACA	1 cut(s)	1051
Bsp143I	GATC	4 cut(s)	30, 182, 898, 1070
BspACI	CCGC	3 cut(s)	47, 932, 990
BspANI	GGCC	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	306
BspPI	GGATC	2 cut(s)	906, 1078
BsrDI	GCAATG	1 cut(s)	1051
BsrGI	TGTACA	1 cut(s)	1051
BsrI	ACTGG	5 cut(s)	298, 599, 602, 638, 645
BssECI	CCNNGG	2 cut(s)	699, 1079
BssMI	GATC	4 cut(s)	30, 182, 898, 1070
BssT1I	CCWWGG	1 cut(s)	699
Bst2UI	CCWGG	3 cut(s)	777, 1068, 1080
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	859
BstAPI	GCANNNNNTGC	1 cut(s)	19
BstAUI	TGTACA	1 cut(s)	1051
BstBAI	YACGTR	1 cut(s)	381
BstC8I	GCNNGC	5 cut(s)	70, 89, 614, 937, 1091
BstDEI	CTNAG	1 cut(s)	660
BstF5I	GGATG	2 cut(s)	766, 1046
BstFNI	CGCG	1 cut(s)	306
BstKTI	GATC	4 cut(s)	33, 185, 901, 1073
BstMBI	GATC	4 cut(s)	30, 182, 898, 1070
BstMWI	GCNNNNNNNGC	4 cut(s)	19, 44, 147, 503
BstNI	CCWGG	3 cut(s)	777, 1068, 1080
BstNSI	RCATGY	3 cut(s)	616, 1058, 1062
BstPAI	GACNNNNGTC	1 cut(s)	563
BstSCI	CCNGG	3 cut(s)	775, 1066, 1078
BstSFI	CTRYAG	2 cut(s)	192, 459
BstSNI	TACGTA	1 cut(s)	381
BstUI	CGCG	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	56
BstV2I	GAAGAC	1 cut(s)	559
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	766, 1046
BtsIMutI	CAGTG	3 cut(s)	89, 609, 638
Cac8I	GCNNGC	5 cut(s)	70, 89, 614, 937, 1091
Csp6I	GTAC	1 cut(s)	1052
CviAII	CATG	6 cut(s)	434, 613, 652, 739, 1055, 1059
CviQI	GTAC	1 cut(s)	1052
DdeI	CTNAG	1 cut(s)	660
DpnI	GATC	4 cut(s)	32, 184, 900, 1072
DpnII	GATC	4 cut(s)	30, 182, 898, 1070
DraI	TTTAAA	1 cut(s)	391
EaeI	YGGCCR	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	859
EarI	CTCTTC	1 cut(s)	859
EciI	GGCGGA	1 cut(s)	1005
Ecl136II	GAGCTC	1 cut(s)	1030
Eco105I	TACGTA	1 cut(s)	381
Eco130I	CCWWGG	1 cut(s)	699
Eco24I	GRGCYC	1 cut(s)	1032
Eco53kI	GAGCTC	1 cut(s)	1030
Eco57I	CTGAAG	1 cut(s)	732
EcoICRI	GAGCTC	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	297
EcoRII	CCWGG	3 cut(s)	775, 1066, 1078
EcoT14I	CCWWGG	1 cut(s)	699
EcoT22I	ATGCAT	1 cut(s)	1060
EcoT38I	GRGCYC	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	699
FaeI	CATG	6 cut(s)	437, 616, 655, 742, 1058, 1062
FatI	CATG	6 cut(s)	433, 612, 651, 738, 1054, 1058
FbaI	TGATCA	1 cut(s)	30
Fnu4HI	GCNGC	2 cut(s)	45, 933
FokI	GGATG	2 cut(s)	773, 1053
FriOI	GRGCYC	1 cut(s)	1032
Fsp4HI	GCNGC	2 cut(s)	45, 933
FspBI	CTAG	2 cut(s)	39, 171
GluI	GCNGC	2 cut(s)	45, 933
GsaI	CCCAGC	1 cut(s)	506
GsuI	CTGGAG	1 cut(s)	1062
HaeIII	GGCC	1 cut(s)	637
HapII	CCGG	1 cut(s)	165
Hin1II	CATG	6 cut(s)	437, 616, 655, 742, 1058, 1062
HindIII	AAGCTT	4 cut(s)	89, 206, 573, 1005
HinfI	GANTC	2 cut(s)	7, 800
HpaII	CCGG	1 cut(s)	165
HphI	GGTGA	1 cut(s)	1065
Hpy188I	TCNGA	1 cut(s)	712
Hpy188III	TCNNGA	3 cut(s)	171, 323, 629
Hpy99I	CGWCG	1 cut(s)	962
HpyAV	CCTTC	4 cut(s)	294, 322, 707, 980
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	7 cut(s)	44, 87, 446, 722, 884, 1044, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	19, 44, 147, 503
HpyF3I	CTNAG	1 cut(s)	660
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	6 cut(s)	437, 616, 655, 742, 1058, 1062
Ksp22I	TGATCA	1 cut(s)	30
Kzo9I	GATC	4 cut(s)	30, 182, 898, 1070
LmnI	GCTCC	3 cut(s)	77, 550, 1027
Lsp1109I	GCAGC	1 cut(s)	56
LweI	GCATC	1 cut(s)	1031
MaeI	CTAG	2 cut(s)	39, 171
MaeII	ACGT	1 cut(s)	380
MaeIII	GTNAC	4 cut(s)	307, 514, 604, 647
MalI	GATC	4 cut(s)	32, 184, 900, 1072
MboI	GATC	4 cut(s)	30, 182, 898, 1070
MboII	GAAGA	4 cut(s)	16, 338, 559, 846
MflI	RGATCY	1 cut(s)	898
MhlI	GDGCHC	1 cut(s)	1032
MlsI	TGGCCA	1 cut(s)	637
MluCI	AATT	9 cut(s)	200, 217, 297, 477, 510, 589, 781, 844, 885
MluNI	TGGCCA	1 cut(s)	637
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	99
Mox20I	TGGCCA	1 cut(s)	637
Mph1103I	ATGCAT	1 cut(s)	1060
MscI	TGGCCA	1 cut(s)	637
MseI	TTAA	5 cut(s)	368, 390, 843, 888, 906
MslI	CAYNNNNRTG	3 cut(s)	727, 908, 1059
Msp20I	TGGCCA	1 cut(s)	637
MspA1I	CMGCKG	2 cut(s)	47, 879
MspI	CCGG	1 cut(s)	165
MspR9I	CCNGG	3 cut(s)	777, 1068, 1080
MvaI	CCWGG	3 cut(s)	777, 1068, 1080
MvnI	CGCG	1 cut(s)	306
MwoI	GCNNNNNNNGC	4 cut(s)	19, 44, 147, 503
NdeII	GATC	4 cut(s)	30, 182, 898, 1070
NlaIII	CATG	6 cut(s)	437, 616, 655, 742, 1058, 1062
NmuCI	GTSAC	3 cut(s)	514, 604, 647
NsiI	ATGCAT	1 cut(s)	1060
NspI	RCATGY	3 cut(s)	616, 1058, 1062
PaeI	GCATGC	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	1 cut(s)	963
PfeI	GAWTC	1 cut(s)	800
PkrI	GCNGC	2 cut(s)	46, 934
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Ppu21I	YACGTR	1 cut(s)	381
PshAI	GACNNNNGTC	1 cut(s)	563
Psp124BI	GAGCTC	1 cut(s)	1032
Psp6I	CCWGG	3 cut(s)	775, 1066, 1078
PspFI	CCCAGC	1 cut(s)	502
PspGI	CCWGG	3 cut(s)	775, 1066, 1078
PsuI	RGATCY	1 cut(s)	898
PvuII	CAGCTG	1 cut(s)	879
RsaI	GTAC	1 cut(s)	1053
RsaNI	GTAC	1 cut(s)	1052
RseI	CAYNNNNRTG	3 cut(s)	727, 908, 1059
SacI	GAGCTC	1 cut(s)	1032
SaqAI	TTAA	5 cut(s)	368, 390, 843, 888, 906
SatI	GCNGC	2 cut(s)	45, 933
Sau3AI	GATC	4 cut(s)	30, 182, 898, 1070
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	3 cut(s)	777, 1068, 1080
SduI	GDGCHC	1 cut(s)	1032
SfaNI	GCATC	1 cut(s)	1031
SfcI	CTRYAG	2 cut(s)	192, 459
SmiMI	CAYNNNNRTG	3 cut(s)	727, 908, 1059
SmlI	CTYRAG	1 cut(s)	470
SmoI	CTYRAG	1 cut(s)	470
SnaBI	TACGTA	1 cut(s)	381
SphI	GCATGC	1 cut(s)	616
Sse9I	AATT	9 cut(s)	200, 217, 297, 477, 510, 589, 781, 844, 885
SsiI	CCGC	3 cut(s)	47, 932, 990
SspMI	CTAG	2 cut(s)	39, 171
SstI	GAGCTC	1 cut(s)	1032
StyD4I	CCNGG	3 cut(s)	775, 1066, 1078
StyI	CCWWGG	1 cut(s)	699
TaaI	ACNGT	1 cut(s)	84
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	361, 375, 966
TasI	AATT	9 cut(s)	200, 217, 297, 477, 510, 589, 781, 844, 885
TatI	WGTACW	1 cut(s)	1051
TauI	GCSGC	1 cut(s)	935
TfiI	GAWTC	1 cut(s)	800
Tru1I	TTAA	5 cut(s)	368, 390, 843, 888, 906
Tru9I	TTAA	5 cut(s)	368, 390, 843, 888, 906
TscAI	CASTG	3 cut(s)	89, 609, 645
TseFI	GTSAC	3 cut(s)	514, 604, 647
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	3 cut(s)	514, 604, 647
TspDTI	ATGAA	3 cut(s)	17, 602, 785
TspGWI	ACGGA	2 cut(s)	93, 129
TspRI	CASTG	3 cut(s)	89, 609, 645
XapI	RAATTY	1 cut(s)	297
XbaI	TCTAGA	1 cut(s)	170
XceI	RCATGY	3 cut(s)	616, 1058, 1062
XcmI	CCANNNNNNNNNTGG	2 cut(s)	419, 758
XspI	CTAG	2 cut(s)	39, 171
Zsp2I	ATGCAT	1 cut(s)	1060

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.