RchiOBHm_Chr2g0165141

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
80149385 .. 80152181
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53311

Sequence Viewer

Length: 1092 bp
ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTACTTCTGGTTATGTCTCTTGCTGTGTTTTCATGTGTAGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGACAGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCAGTTGCCCTTTTGAGTTTTTAGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAGTTCCCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCCATCGAAGGAGAGCCATCTCATACTGGAGTCTCTCGTTTTCCCTTGACGATTAGTCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTGATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTATTCGAAGGACAATGTAATGACAACACTGCATTTGAGCCAGCTATAGATACATTAAACGAAATCCAAGCATTTTTATCAGCAAATCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAATCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAGCATGCCCAAAAGTGGTCAGGATTGGCCGTTGGTTAGCGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACGAGTATGGAGATGATGGAATGGAAGAGGGAAGTTGTTCAAACAGAGGTGAATCGTCGCCTTTAAATGACAAGACTAAATCATTGGTGCTGGTTAACCATTTTCAATCACCTCCCATTAAGCAGCTCTCATGTCTATTCAATTCTGAGGATTTGGTTAGCAAGCTTAACACTTGCTATGGTGCTGCTGGAAACCGATGGGCAAATTTTGTTGCGGTTGATTTTTACAAGGGGGGGGGATCGTTTCAAGCTACAGACACGCTTAATGGAGAACTCATATGTGGATGTAACAATATCCATGCATGTGTGGTAAGCTATGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

363

Amino Acids

40.15

Weight (kDa)

4.66

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 76 - 357 4.5e-137 PI-PLC-like catalytic domain
PI-PLC_X PF26146 112 - 344 1.5e-24 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 140, 980
AclWI GGATC 1 cut(s) 1012
AcoI YGGCCR 1 cut(s) 653
AcsI RAATTY 1 cut(s) 970
AfiI CCNNNNNNNGG 1 cut(s) 641
AhdI GACNNNNNGTC 1 cut(s) 333
AjnI CCWGG 1 cut(s) 520
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 54, 316
AlwI GGATC 1 cut(s) 1012
AoxI GGCC 1 cut(s) 653
ApeKI GCWGC 2 cut(s) 889, 950
ApoI RAATTY 1 cut(s) 970
Asp700I GAANNNNTTC 1 cut(s) 802
AsuHPI GGTGA 2 cut(s) 827, 867
AsuII TTCGAA 1 cut(s) 438
BanII GRGCYC 1 cut(s) 382
BbsI GAAGAC 2 cut(s) 11, 348
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 901, 937
BccI CCATC 5 cut(s) 83, 290, 304, 776, 957
BceAI ACGGC 1 cut(s) 640
BcgI CGANNNNNNTGC 4 cut(s) 656, 690, 719, 753
BciT130I CCWGG 1 cut(s) 522
BcoDI GTCTC 2 cut(s) 54, 316
BfmI CTRYAG 2 cut(s) 477, 1017
BisI GCNGC 2 cut(s) 890, 951
BlsI GCNGC 2 cut(s) 891, 952
Bme1390I CCNGG 1 cut(s) 522
BmeRI GACNNNNNGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 522
BmsI GCATC 1 cut(s) 375
BpiI GAAGAC 2 cut(s) 11, 348
BpmI CTGGAG 2 cut(s) 166, 327
Bpu14I TTCGAA 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 619
BsaXI ACNNNNNCTCC 2 cut(s) 516, 546
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse1I ACTGG 3 cut(s) 310, 617, 745
BseBI CCWGG 1 cut(s) 522
BseGI GGATG 1 cut(s) 1055
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMII CTCAG 1 cut(s) 903
BseNI ACTGG 3 cut(s) 310, 617, 745
BseXI GCAGC 2 cut(s) 901, 937
BshFI GGCC 1 cut(s) 655
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 2 cut(s) 597, 620
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 2 cut(s) 54, 316
BsnI GGCC 1 cut(s) 655
Bsp119I TTCGAA 1 cut(s) 438
Bsp1286I GDGCHC 2 cut(s) 119, 382
Bsp143I GATC 3 cut(s) 109, 194, 1004
BspACI CCGC 2 cut(s) 140, 980
BspANI GGCC 1 cut(s) 655
BspCNI CTCAG 1 cut(s) 904
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 1 cut(s) 1012
BspT104I TTCGAA 1 cut(s) 438
BsrI ACTGG 3 cut(s) 310, 617, 745
BssMI GATC 3 cut(s) 109, 194, 1004
Bst2UI CCWGG 1 cut(s) 522
Bst4CI ACNGT 3 cut(s) 96, 152, 349
Bst6I CTCTTC 1 cut(s) 786
BstBI TTCGAA 1 cut(s) 438
BstC8I GCNNGC 5 cut(s) 82, 101, 474, 632, 929
BstDEI CTNAG 2 cut(s) 106, 912
BstF5I GGATG 1 cut(s) 1055
BstKTI GATC 3 cut(s) 112, 197, 1007
BstMAI GTCTC 2 cut(s) 54, 316
BstMBI GATC 3 cut(s) 109, 194, 1004
BstNI CCWGG 1 cut(s) 522
BstNSI RCATGY 2 cut(s) 634, 1071
BstSCI CCNGG 1 cut(s) 520
BstSFI CTRYAG 2 cut(s) 477, 1017
BstV1I GCAGC 2 cut(s) 901, 937
BstV2I GAAGAC 2 cut(s) 11, 348
BsuRI GGCC 1 cut(s) 655
BtsCI GGATG 1 cut(s) 1055
BtsI GCAGTG 1 cut(s) 459
BtsIMutI CAGTG 5 cut(s) 101, 119, 345, 459, 752
Cac8I GCNNGC 5 cut(s) 82, 101, 474, 632, 929
CviAII CATG 6 cut(s) 66, 631, 757, 897, 1064, 1068
DdeI CTNAG 2 cut(s) 106, 912
DpnI GATC 3 cut(s) 111, 196, 1006
DpnII GATC 3 cut(s) 109, 194, 1004
DraI TTTAAA 2 cut(s) 406, 831
DriI GACNNNNNGTC 1 cut(s) 333
EaeI YGGCCR 1 cut(s) 653
Eam1104I CTCTTC 1 cut(s) 786
Eam1105I GACNNNNNGTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 786
Eco24I GRGCYC 1 cut(s) 382
EcoRII CCWGG 1 cut(s) 520
EcoT22I ATGCAT 2 cut(s) 256, 1069
EcoT38I GRGCYC 1 cut(s) 382
FaeI CATG 6 cut(s) 69, 634, 760, 900, 1067, 1071
FatI CATG 6 cut(s) 65, 630, 756, 896, 1063, 1067
FauI CCCGC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 1043
Fnu4HI GCNGC 2 cut(s) 890, 951
FokI GGATG 1 cut(s) 1062
FriOI GRGCYC 1 cut(s) 382
Fsp4HI GCNGC 2 cut(s) 890, 951
GluI GCNGC 2 cut(s) 890, 951
GsuI CTGGAG 2 cut(s) 166, 327
HaeIII GGCC 1 cut(s) 655
HapII CCGG 2 cut(s) 597, 620
Hin1II CATG 6 cut(s) 69, 634, 760, 900, 1067, 1071
HincII GTYRAC 1 cut(s) 862
HindII GTYRAC 1 cut(s) 862
HindIII AAGCTT 1 cut(s) 929
HinfI GANTC 3 cut(s) 10, 309, 818
HpaI GTTAAC 1 cut(s) 862
HpaII CCGG 2 cut(s) 597, 620
HphI GGTGA 2 cut(s) 827, 867
Hpy166II GTNNAC 1 cut(s) 862
Hpy188I TCNGA 3 cut(s) 88, 730, 913
Hpy188III TCNNGA 3 cut(s) 183, 338, 647
Hpy8I GTNNAC 1 cut(s) 862
Hpy99I CGWCG 1 cut(s) 826
HpyAV CCTTC 5 cut(s) 35, 281, 434, 712, 725
HpyCH4III ACNGT 3 cut(s) 96, 152, 349
HpyCH4V TGCA 5 cut(s) 99, 254, 464, 740, 1067
HpyF3I CTNAG 2 cut(s) 106, 912
Hsp92II CATG 6 cut(s) 69, 634, 760, 900, 1067, 1071
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 3 cut(s) 109, 194, 1004
LmnI GCTCC 3 cut(s) 89, 185, 568
Lsp1109I GCAGC 2 cut(s) 901, 937
LweI GCATC 1 cut(s) 375
MaeIII GTNAC 3 cut(s) 349, 532, 1052
MalI GATC 3 cut(s) 111, 196, 1006
MboI GATC 3 cut(s) 109, 194, 1004
MboII GAAGA 3 cut(s) 16, 353, 803
MhlI GDGCHC 2 cut(s) 119, 382
MluCI AATT 4 cut(s) 212, 528, 907, 970
MlyI GAGTC 2 cut(s) 4, 318
MnlI CCTC 6 cut(s) 130, 541, 787, 806, 888, 907
Mph1103I ATGCAT 2 cut(s) 256, 1069
MroXI GAANNNNTTC 1 cut(s) 802
MseI TTAA 8 cut(s) 363, 405, 488, 830, 861, 885, 933, 1029
MslI CAYNNNNRTG 2 cut(s) 745, 1068
MspI CCGG 2 cut(s) 597, 620
MspR9I CCNGG 1 cut(s) 522
MvaI CCWGG 1 cut(s) 522
NdeI CATATG 1 cut(s) 1043
NdeII GATC 3 cut(s) 109, 194, 1004
NlaIII CATG 6 cut(s) 69, 634, 760, 900, 1067, 1071
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 349, 532
NsiI ATGCAT 2 cut(s) 256, 1069
NspI RCATGY 2 cut(s) 634, 1071
NspV TTCGAA 1 cut(s) 438
PaeI GCATGC 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 802
PfeI GAWTC 1 cut(s) 818
PflFI GACNNNGTC 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 520
PkrI GCNGC 2 cut(s) 891, 952
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
Psp6I CCWGG 1 cut(s) 520
PspGI CCWGG 1 cut(s) 520
PspN4I GGNNCC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 347
RseI CAYNNNNRTG 2 cut(s) 745, 1068
SaqAI TTAA 8 cut(s) 363, 405, 488, 830, 861, 885, 933, 1029
SatI GCNGC 2 cut(s) 890, 951
Sau3AI GATC 3 cut(s) 109, 194, 1004
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 1 cut(s) 522
SduI GDGCHC 2 cut(s) 119, 382
SfaNI GCATC 1 cut(s) 375
SfcI CTRYAG 2 cut(s) 477, 1017
SfuI TTCGAA 1 cut(s) 438
SmiMI CAYNNNNRTG 2 cut(s) 745, 1068
SphI GCATGC 1 cut(s) 634
Sse9I AATT 4 cut(s) 212, 528, 907, 970
SsiI CCGC 2 cut(s) 140, 980
StyD4I CCNGG 1 cut(s) 520
TaaI ACNGT 3 cut(s) 96, 152, 349
TaqI TCGA 3 cut(s) 119, 285, 438
TasI AATT 4 cut(s) 212, 528, 907, 970
TfiI GAWTC 1 cut(s) 818
Tru1I TTAA 8 cut(s) 363, 405, 488, 830, 861, 885, 933, 1029
Tru9I TTAA 8 cut(s) 363, 405, 488, 830, 861, 885, 933, 1029
TscAI CASTG 5 cut(s) 101, 119, 352, 466, 752
TseFI GTSAC 2 cut(s) 349, 532
TseI GCWGC 2 cut(s) 889, 950
Tsp45I GTSAC 2 cut(s) 349, 532
TspDTI ATGAA 3 cut(s) 17, 54, 620
TspGWI ACGGA 2 cut(s) 141, 585
TspRI CASTG 5 cut(s) 101, 119, 352, 466, 752
Tth111I GACNNNGTC 1 cut(s) 347
XapI RAATTY 1 cut(s) 970
XceI RCATGY 2 cut(s) 634, 1071
XmnI GAANNNNTTC 1 cut(s) 802
Zsp2I ATGCAT 2 cut(s) 256, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.