RchiOBHm_Chr1g0319961

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001750
Physical Location & Seq
Reverse (-)
7622853 .. 7623527
675 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55015

Sequence Viewer

Length: 486 bp
ATGCCCAAAGGTGGTCAGGATTGGCCGTTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAAGCACACAATTTTGCAGATGGAAATGATGGAATGAAAGCGGGAAGCTGTTCAAACAAAGTTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTATGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTACTGGAAACCGATGGGCAAATTTTGTTGCGGTTGATTTTTACATGAGGAGTGGAGAAGGGGGATCGTTTCAACCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGGTAAGCTATGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.86

Weight (kDa)

4.81

Isoelectric Point (pI)

40.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 1 - 155 1.8e-66 PI-PLC-like catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 179, 365
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 23
AcsI RAATTY 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 11
AgsI TTSAA 6 cut(s) 78, 134, 192, 203, 292, 407
AluBI AGCT 3 cut(s) 186, 277, 474
AluI AGCT 3 cut(s) 186, 277, 474
AlwI GGATC 1 cut(s) 406
AoxI GGCC 1 cut(s) 23
ApeKI GCWGC 1 cut(s) 274
ApoI RAATTY 1 cut(s) 355
Asp700I GAANNNNTTC 1 cut(s) 187
BbvI GCAGC 1 cut(s) 286
BccI CCATC 3 cut(s) 152, 161, 342
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 4 cut(s) 89, 123, 440, 474
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 276
Bsc4I CCNNNNNNNGG 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 115, 343
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 11
BseNI ACTGG 2 cut(s) 115, 343
BseRI GAGGAG 1 cut(s) 397
BseXI GCAGC 1 cut(s) 286
BshFI GGCC 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 11
BsnI GGCC 1 cut(s) 25
Bsp143I GATC 1 cut(s) 398
BspACI CCGC 2 cut(s) 179, 365
BspANI GGCC 1 cut(s) 25
BspPI GGATC 1 cut(s) 406
BsrI ACTGG 2 cut(s) 115, 343
BssMI GATC 1 cut(s) 398
BstC8I GCNNGC 1 cut(s) 314
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 449
BstKTI GATC 1 cut(s) 401
BstMBI GATC 1 cut(s) 398
BstNSI RCATGY 2 cut(s) 316, 465
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 1 cut(s) 286
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 314
CviAII CATG 6 cut(s) 127, 282, 313, 379, 458, 462
CviJI RGCY 5 cut(s) 25, 61, 186, 277, 474
CviKI_1 RGCY 5 cut(s) 25, 61, 186, 277, 474
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 400
DpnII GATC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 23
EcoT22I ATGCAT 1 cut(s) 463
FaeI CATG 6 cut(s) 130, 285, 316, 382, 461, 465
FatI CATG 6 cut(s) 126, 281, 312, 378, 457, 461
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 437
Fnu4HI GCNGC 1 cut(s) 275
FokI GGATG 1 cut(s) 456
Fsp4HI GCNGC 1 cut(s) 275
GluI GCNGC 1 cut(s) 275
HaeIII GGCC 1 cut(s) 25
Hin1II CATG 6 cut(s) 130, 285, 316, 382, 461, 465
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 1 cut(s) 203
HpaI GTTAAC 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 82, 95, 386
HpyCH4V TGCA 3 cut(s) 110, 155, 461
HpyF3I CTNAG 1 cut(s) 48
Hsp92II CATG 6 cut(s) 130, 285, 316, 382, 461, 465
KspAI GTTAAC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 398
LpnPI CCDG 3 cut(s) 2, 128, 324
Lsp1109I GCAGC 1 cut(s) 286
MaeIII GTNAC 2 cut(s) 43, 446
MalI GATC 1 cut(s) 400
MboI GATC 1 cut(s) 398
MluCI AATT 4 cut(s) 148, 287, 292, 355
MnlI CCTC 3 cut(s) 222, 292, 375
Mph1103I ATGCAT 1 cut(s) 463
MroXI GAANNNNTTC 1 cut(s) 187
MseI TTAA 3 cut(s) 246, 270, 318
MslI CAYNNNNRTG 2 cut(s) 115, 462
NdeI CATATG 1 cut(s) 437
NdeII GATC 1 cut(s) 398
NlaIII CATG 6 cut(s) 130, 285, 316, 382, 461, 465
NmuCI GTSAC 1 cut(s) 43
NsiI ATGCAT 1 cut(s) 463
NspI RCATGY 2 cut(s) 316, 465
PaeI GCATGC 1 cut(s) 316
PdmI GAANNNNTTC 1 cut(s) 187
PfeI GAWTC 1 cut(s) 203
PkrI GCNGC 1 cut(s) 276
RseI CAYNNNNRTG 2 cut(s) 115, 462
SaqAI TTAA 3 cut(s) 246, 270, 318
SatI GCNGC 1 cut(s) 275
Sau3AI GATC 1 cut(s) 398
SetI ASST 5 cut(s) 13, 188, 279, 412, 476
SfcI CTRYAG 1 cut(s) 411
SmiMI CAYNNNNRTG 2 cut(s) 115, 462
SphI GCATGC 1 cut(s) 316
Sse9I AATT 4 cut(s) 148, 287, 292, 355
SsiI CCGC 2 cut(s) 179, 365
TasI AATT 4 cut(s) 148, 287, 292, 355
TfiI GAWTC 1 cut(s) 203
Tru1I TTAA 3 cut(s) 246, 270, 318
Tru9I TTAA 3 cut(s) 246, 270, 318
TscAI CASTG 1 cut(s) 122
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 274
Tsp45I GTSAC 1 cut(s) 43
TspDTI ATGAA 1 cut(s) 188
TspRI CASTG 1 cut(s) 122
XapI RAATTY 1 cut(s) 355
XceI RCATGY 2 cut(s) 316, 465
XmnI GAANNNNTTC 1 cut(s) 187
Zsp2I ATGCAT 1 cut(s) 463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.