RLG00000021511

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001750
Physical Location & Seq
Forward (+)
76018681 .. 76021603
2923 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021511

Sequence Viewer

Length: 1107 bp
ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTAGTTCTGGTTATGTCTCTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGACGGACAGTGCAAGCTCTTAGATCAGTGCTCGACGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTTGGAGTTTTTAGGCTCCAGATGTGTGAGATCGACCACCACCAACCAATTCCAGCTTTTGAATAGTTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCCATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTGTTACCTTGACGAATCAAGAGGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTGATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGACAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTAAACGAAATCCAAGCATTTTTATCAGCAAATCCAGGAGAAATCGTGACATTGATATTAGAGGACTATGTTGAAGCTTCAAACGGACTGACAAATGTTTTCAAATCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTAGTTAGCGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAATGGAACTACATGGTTGAAAATCAGTATGGAGATGATGGAATGGAAGCGGGAAGCTGTTCAAACAGAGGTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTAGTTAACTATTTTGGGTCATTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTCAGGATTTGGTTAGCATGCTTTACACTTGCTATTGTGCTGCTGGAAACCGGTGGGCTAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGGGGAGGATCGTTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGCCAGGATCAACAACACCCTGCAAGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

369

Amino Acids

40.55

Weight (kDa)

4.94

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 76 - 358 1.1e-147 PI-PLC-like catalytic domain
PI-PLC_X PF26146 106 - 296 3.2e-23 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 140, 650, 788, 974
AclWI GGATC 2 cut(s) 1015, 1090
AcoI YGGCCR 1 cut(s) 647
AfiI CCNNNNNNNGG 1 cut(s) 635
AgeI ACCGGT 1 cut(s) 954
AjnI CCWGG 2 cut(s) 514, 1078
AluBI AGCT 9 cut(s) 21, 80, 103, 220, 470, 557, 795, 886, 1019
AluI AGCT 9 cut(s) 21, 80, 103, 220, 470, 557, 795, 886, 1019
Alw21I GWGCWC 1 cut(s) 119
Alw26I GTCTC 1 cut(s) 54
AlwI GGATC 2 cut(s) 1015, 1090
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 2 cut(s) 883, 944
AsiGI ACCGGT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 796
AsuHPI GGTGA 1 cut(s) 821
BanII GRGCYC 1 cut(s) 379
BauI CACGAG 1 cut(s) 315
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 119
BbvI GCAGC 2 cut(s) 895, 931
BccI CCATC 3 cut(s) 290, 304, 770
BcgI CGANNNNNNTGC 6 cut(s) 650, 684, 713, 747, 1049, 1083
BciT130I CCWGG 2 cut(s) 516, 1080
BcoDI GTCTC 1 cut(s) 54
BfaI CTAG 2 cut(s) 35, 653
BfmI CTRYAG 2 cut(s) 471, 1020
BisI GCNGC 3 cut(s) 650, 884, 945
BlsI GCNGC 3 cut(s) 651, 885, 946
Bme1390I CCNGG 2 cut(s) 516, 1080
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 2 cut(s) 516, 1080
BmsI GCATC 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 166
BsaWI WCCGGW 3 cut(s) 305, 613, 954
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse118I RCCGGY 1 cut(s) 954
Bse1I ACTGG 1 cut(s) 611
BseBI CCWGG 2 cut(s) 516, 1080
BseGI GGATG 1 cut(s) 1058
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMII CTCAG 1 cut(s) 920
BseNI ACTGG 1 cut(s) 611
BseRI GAGGAG 1 cut(s) 1006
BseXI GCAGC 2 cut(s) 895, 931
BshFI GGCC 1 cut(s) 649
BshTI ACCGGT 1 cut(s) 954
BsiHKAI GWGCWC 1 cut(s) 119
BsiSI CCGG 4 cut(s) 306, 591, 614, 955
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 1 cut(s) 54
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 1 cut(s) 649
Bsp1286I GDGCHC 2 cut(s) 119, 379
Bsp143I GATC 4 cut(s) 109, 194, 1007, 1082
BspACI CCGC 4 cut(s) 140, 650, 788, 974
BspANI GGCC 1 cut(s) 649
BspCNI CTCAG 1 cut(s) 919
BspLI GGNNCC 1 cut(s) 181
BspPI GGATC 2 cut(s) 1015, 1090
BsrFI RCCGGY 1 cut(s) 954
BsrI ACTGG 1 cut(s) 611
BssAI RCCGGY 1 cut(s) 954
BssMI GATC 4 cut(s) 109, 194, 1007, 1082
BssSI CACGAG 1 cut(s) 315
Bst2BI CACGAG 1 cut(s) 315
Bst2UI CCWGG 2 cut(s) 516, 1080
Bst4CI ACNGT 3 cut(s) 96, 152, 346
BstC8I GCNNGC 4 cut(s) 82, 101, 468, 923
BstDEI CTNAG 2 cut(s) 106, 906
BstF5I GGATG 1 cut(s) 1058
BstKTI GATC 4 cut(s) 112, 197, 1010, 1085
BstMAI GTCTC 1 cut(s) 54
BstMBI GATC 4 cut(s) 109, 194, 1007, 1082
BstNI CCWGG 2 cut(s) 516, 1080
BstNSI RCATGY 3 cut(s) 628, 925, 1074
BstSCI CCNGG 2 cut(s) 514, 1078
BstSFI CTRYAG 2 cut(s) 471, 1020
BstV1I GCAGC 2 cut(s) 895, 931
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 649
BtsCI GGATG 1 cut(s) 1058
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 4 cut(s) 101, 119, 342, 453
Cac8I GCNNGC 4 cut(s) 82, 101, 468, 923
Cfr10I RCCGGY 1 cut(s) 954
CspAI ACCGGT 1 cut(s) 954
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
CviAII CATG 8 cut(s) 66, 446, 625, 751, 891, 922, 1067, 1071
DdeI CTNAG 2 cut(s) 106, 906
DpnI GATC 4 cut(s) 111, 196, 1009, 1084
DpnII GATC 4 cut(s) 109, 194, 1007, 1082
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 647
Eco24I GRGCYC 1 cut(s) 379
EcoRII CCWGG 2 cut(s) 514, 1078
EcoT22I ATGCAT 2 cut(s) 256, 1072
EcoT38I GRGCYC 1 cut(s) 379
FaeI CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
FaqI GGGAC 1 cut(s) 296
FatI CATG 8 cut(s) 65, 445, 624, 750, 890, 921, 1066, 1070
FauI CCCGC 2 cut(s) 133, 781
FauNDI CATATG 1 cut(s) 1046
Fnu4HI GCNGC 3 cut(s) 650, 884, 945
FokI GGATG 1 cut(s) 1065
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 3 cut(s) 650, 884, 945
FspBI CTAG 2 cut(s) 35, 653
GluI GCNGC 3 cut(s) 650, 884, 945
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 649
HapII CCGG 4 cut(s) 306, 591, 614, 955
Hin1II CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HindIII AAGCTT 1 cut(s) 555
HinfI GANTC 4 cut(s) 10, 309, 331, 812
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 4 cut(s) 306, 591, 614, 955
HphI GGTGA 1 cut(s) 821
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 2 cut(s) 88, 724
Hpy188III TCNNGA 5 cut(s) 183, 335, 526, 641, 908
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 3 cut(s) 92, 124, 820
HpyAV CCTTC 5 cut(s) 35, 281, 439, 706, 719
HpyCH4III ACNGT 3 cut(s) 96, 152, 346
HpyCH4V TGCA 6 cut(s) 99, 254, 458, 734, 1070, 1098
HpyF3I CTNAG 2 cut(s) 106, 906
Hsp92II CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 4 cut(s) 109, 194, 1007, 1082
LmnI GCTCC 2 cut(s) 89, 185
Lsp1109I GCAGC 2 cut(s) 895, 931
LweI GCATC 1 cut(s) 372
MaeI CTAG 2 cut(s) 35, 653
MaeIII GTNAC 4 cut(s) 319, 346, 526, 1055
MalI GATC 4 cut(s) 111, 196, 1009, 1084
MboI GATC 4 cut(s) 109, 194, 1007, 1082
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 119, 379
MluCI AATT 4 cut(s) 212, 896, 901, 964
MlyI GAGTC 2 cut(s) 4, 318
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 130, 324, 331, 535, 800, 831, 984, 992, 998
Mph1103I ATGCAT 2 cut(s) 256, 1072
MroXI GAANNNNTTC 1 cut(s) 796
MseI TTAA 5 cut(s) 360, 402, 482, 855, 879
MslI CAYNNNNRTG 2 cut(s) 739, 1071
MspI CCGG 4 cut(s) 306, 591, 614, 955
MspR9I CCNGG 2 cut(s) 516, 1080
MvaI CCWGG 2 cut(s) 516, 1080
NdeI CATATG 1 cut(s) 1046
NdeII GATC 4 cut(s) 109, 194, 1007, 1082
NlaIII CATG 8 cut(s) 69, 449, 628, 754, 894, 925, 1070, 1074
NlaIV GGNNCC 1 cut(s) 181
NmuCI GTSAC 2 cut(s) 346, 526
NsiI ATGCAT 2 cut(s) 256, 1072
NspI RCATGY 3 cut(s) 628, 925, 1074
PaeI GCATGC 1 cut(s) 925
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 2 cut(s) 331, 812
PflFI GACNNNGTC 1 cut(s) 344
PfoI TCCNGGA 1 cut(s) 514
PinAI ACCGGT 1 cut(s) 954
PkrI GCNGC 3 cut(s) 651, 885, 946
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
Psp6I CCWGG 2 cut(s) 514, 1078
PspGI CCWGG 2 cut(s) 514, 1078
PspN4I GGNNCC 1 cut(s) 181
PsyI GACNNNGTC 1 cut(s) 344
RseI CAYNNNNRTG 2 cut(s) 739, 1071
SaqAI TTAA 5 cut(s) 360, 402, 482, 855, 879
SatI GCNGC 3 cut(s) 650, 884, 945
Sau3AI GATC 4 cut(s) 109, 194, 1007, 1082
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 2 cut(s) 516, 1080
SduI GDGCHC 2 cut(s) 119, 379
SfaNI GCATC 1 cut(s) 372
SfcI CTRYAG 2 cut(s) 471, 1020
SmiMI CAYNNNNRTG 2 cut(s) 739, 1071
SphI GCATGC 1 cut(s) 925
Sse9I AATT 4 cut(s) 212, 896, 901, 964
SsiI CCGC 4 cut(s) 140, 650, 788, 974
SspMI CTAG 2 cut(s) 35, 653
StyD4I CCNGG 2 cut(s) 514, 1078
TaaI ACNGT 3 cut(s) 96, 152, 346
TaqI TCGA 3 cut(s) 119, 197, 285
TasI AATT 4 cut(s) 212, 896, 901, 964
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 2 cut(s) 331, 812
Tru1I TTAA 5 cut(s) 360, 402, 482, 855, 879
Tru9I TTAA 5 cut(s) 360, 402, 482, 855, 879
TscAI CASTG 4 cut(s) 101, 119, 349, 460
TseFI GTSAC 2 cut(s) 346, 526
TseI GCWGC 2 cut(s) 883, 944
Tsp45I GTSAC 2 cut(s) 346, 526
TspDTI ATGAA 3 cut(s) 17, 54, 614
TspGWI ACGGA 4 cut(s) 105, 137, 141, 579
TspRI CASTG 4 cut(s) 101, 119, 349, 460
Tth111I GACNNNGTC 1 cut(s) 344
XceI RCATGY 3 cut(s) 628, 925, 1074
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 2 cut(s) 35, 653
Zsp2I ATGCAT 2 cut(s) 256, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.