RchiOBHm_Chr1g0320501

PI-PLC X domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
8113329 .. 8115426
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55064

Sequence Viewer

Length: 984 bp
ATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGTTTCTGACTTTCTTGTCAGTGAGGTTAGACCTTCGGACAGATTATTCATTGGCTCCAGCCAATATATATGGGTTAAGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACAGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGATACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGTCATGACTACACTGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGTTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTATATGGTTGAAAACCAGTATGGAAATGATGGAATGAAAGCGGGAAGCTGTTCAAATAGAGCTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTAGAAACCGATGGGCGAATTTTGTGCGGTTGATTTTTACAAGGAGTGGAGGAGGGGGATCGTTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGGTAAGATATGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

327

Amino Acids

36.66

Weight (kDa)

5.4

Isoelectric Point (pI)

36.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 39 - 321 3.3e-143 PI-PLC-like catalytic domain
PI-PLC_X PF26146 70 - 260 5.5e-24 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
AciI CCGC 2 cut(s) 680, 865
AclWI GGATC 1 cut(s) 904
AcoI YGGCCR 1 cut(s) 539
AcsI RAATTY 1 cut(s) 856
AfiI CCNNNNNNNGG 1 cut(s) 527
AjnI CCWGG 1 cut(s) 406
AluBI AGCT 8 cut(s) 35, 362, 449, 479, 687, 701, 778, 908
AluI AGCT 8 cut(s) 35, 362, 449, 479, 687, 701, 778, 908
AlwI GGATC 1 cut(s) 904
AoxI GGCC 1 cut(s) 539
ApeKI GCWGC 3 cut(s) 479, 775, 836
ApoI RAATTY 1 cut(s) 856
Asp700I GAANNNNTTC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 271
BauI CACGAG 1 cut(s) 207
BbvI GCAGC 3 cut(s) 466, 787, 823
BccI CCATC 3 cut(s) 196, 662, 843
BceAI ACGGC 1 cut(s) 526
BcgI CGANNNNNNTGC 6 cut(s) 605, 639, 844, 878, 938, 972
BciT130I CCWGG 1 cut(s) 408
BfaI CTAG 1 cut(s) 840
BfmI CTRYAG 2 cut(s) 363, 909
BisI GCNGC 3 cut(s) 480, 776, 837
BlsI GCNGC 3 cut(s) 481, 777, 838
Bme1390I CCNGG 1 cut(s) 408
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 406
BsaWI WCCGGW 1 cut(s) 505
BsaXI ACNNNNNCTCC 2 cut(s) 402, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 527
Bse1I ACTGG 3 cut(s) 503, 631, 655
BseBI CCWGG 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 1 cut(s) 947
BseLI CCNNNNNNNGG 1 cut(s) 527
BseMII CTCAG 1 cut(s) 789
BseNI ACTGG 3 cut(s) 503, 631, 655
BseRI GAGGAG 1 cut(s) 903
BseXI GCAGC 3 cut(s) 466, 787, 823
BshFI GGCC 1 cut(s) 541
BsiSI CCGG 2 cut(s) 483, 506
BslFI GGGAC 1 cut(s) 188
BslI CCNNNNNNNGG 1 cut(s) 527
BsmFI GGGAC 1 cut(s) 188
BsnI GGCC 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 9, 896
BspACI CCGC 2 cut(s) 680, 865
BspANI GGCC 1 cut(s) 541
BspCNI CTCAG 1 cut(s) 790
BspHI TCATGA 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 1 cut(s) 904
BsrI ACTGG 3 cut(s) 503, 631, 655
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 2 cut(s) 9, 896
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 408
Bst4CI ACNGT 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 360, 815
BstDEI CTNAG 2 cut(s) 564, 798
BstF5I GGATG 1 cut(s) 947
BstKTI GATC 2 cut(s) 12, 899
BstMBI GATC 2 cut(s) 9, 896
BstNI CCWGG 1 cut(s) 408
BstNSI RCATGY 3 cut(s) 520, 817, 963
BstSCI CCNGG 1 cut(s) 406
BstSFI CTRYAG 2 cut(s) 363, 909
BstV1I GCAGC 3 cut(s) 466, 787, 823
BsuRI GGCC 1 cut(s) 541
BtsCI GGATG 1 cut(s) 947
BtsI GCAGTG 1 cut(s) 345
BtsIMutI CAGTG 3 cut(s) 64, 345, 638
Cac8I GCNNGC 2 cut(s) 360, 815
CciI TCATGA 1 cut(s) 337
CviAII CATG 6 cut(s) 338, 517, 783, 814, 956, 960
DdeI CTNAG 2 cut(s) 564, 798
DpnI GATC 2 cut(s) 11, 898
DpnII GATC 2 cut(s) 9, 896
DraI TTTAAA 1 cut(s) 295
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
EaeI YGGCCR 1 cut(s) 539
Eco24I GRGCYC 1 cut(s) 271
EcoRII CCWGG 1 cut(s) 406
EcoT22I ATGCAT 2 cut(s) 148, 961
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 6 cut(s) 341, 520, 786, 817, 959, 963
FaqI GGGAC 1 cut(s) 188
FatI CATG 6 cut(s) 337, 516, 782, 813, 955, 959
FauI CCCGC 1 cut(s) 673
FauNDI CATATG 1 cut(s) 935
Fnu4HI GCNGC 3 cut(s) 480, 776, 837
FokI GGATG 1 cut(s) 954
FriOI GRGCYC 1 cut(s) 271
Fsp4HI GCNGC 3 cut(s) 480, 776, 837
FspBI CTAG 1 cut(s) 840
GluI GCNGC 3 cut(s) 480, 776, 837
GsuI CTGGAG 1 cut(s) 79
HaeIII GGCC 1 cut(s) 541
HapII CCGG 2 cut(s) 483, 506
Hin1II CATG 6 cut(s) 341, 520, 786, 817, 959, 963
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 3 cut(s) 201, 223, 704
HpaI GTTAAC 1 cut(s) 748
HpaII CCGG 2 cut(s) 483, 506
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 4 cut(s) 46, 76, 616, 799
Hpy188III TCNNGA 4 cut(s) 220, 227, 338, 533
Hpy8I GTNNAC 1 cut(s) 748
Hpy99I CGWCG 1 cut(s) 712
HpyAV CCTTC 6 cut(s) 81, 173, 226, 331, 598, 611
HpyCH4III ACNGT 1 cut(s) 238
HpyCH4V TGCA 4 cut(s) 146, 350, 626, 959
HpyF3I CTNAG 2 cut(s) 564, 798
Hsp92II CATG 6 cut(s) 341, 520, 786, 817, 959, 963
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 2 cut(s) 9, 896
LmnI GCTCC 2 cut(s) 98, 454
Lsp1109I GCAGC 3 cut(s) 466, 787, 823
MaeI CTAG 1 cut(s) 840
MaeIII GTNAC 5 cut(s) 211, 238, 418, 559, 944
MalI GATC 2 cut(s) 11, 898
MboI GATC 2 cut(s) 9, 896
MboII GAAGA 1 cut(s) 242
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 6 cut(s) 27, 121, 414, 788, 793, 856
MlyI GAGTC 1 cut(s) 210
MnlI CCTC 7 cut(s) 55, 216, 427, 723, 793, 881, 884
Mph1103I ATGCAT 2 cut(s) 148, 961
MroXI GAANNNNTTC 1 cut(s) 688
MseI TTAA 6 cut(s) 114, 252, 294, 747, 771, 819
MslI CAYNNNNRTG 2 cut(s) 631, 960
MspI CCGG 2 cut(s) 483, 506
MspR9I CCNGG 1 cut(s) 408
MvaI CCWGG 1 cut(s) 408
NdeI CATATG 1 cut(s) 935
NdeII GATC 2 cut(s) 9, 896
NlaIII CATG 6 cut(s) 341, 520, 786, 817, 959, 963
NlaIV GGNNCC 1 cut(s) 94
NmuCI GTSAC 3 cut(s) 238, 418, 559
NsiI ATGCAT 2 cut(s) 148, 961
NspI RCATGY 3 cut(s) 520, 817, 963
PaeI GCATGC 1 cut(s) 817
PagI TCATGA 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 2 cut(s) 223, 704
PkrI GCNGC 3 cut(s) 481, 777, 838
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 406
PspGI CCWGG 1 cut(s) 406
PspN4I GGNNCC 1 cut(s) 94
RseI CAYNNNNRTG 2 cut(s) 631, 960
SaqAI TTAA 6 cut(s) 114, 252, 294, 747, 771, 819
SatI GCNGC 3 cut(s) 480, 776, 837
Sau3AI GATC 2 cut(s) 9, 896
SchI GAGTC 1 cut(s) 210
ScrFI CCNGG 1 cut(s) 408
SduI GDGCHC 1 cut(s) 271
SfcI CTRYAG 2 cut(s) 363, 909
SmiMI CAYNNNNRTG 2 cut(s) 631, 960
SphI GCATGC 1 cut(s) 817
Sse9I AATT 6 cut(s) 27, 121, 414, 788, 793, 856
SsiI CCGC 2 cut(s) 680, 865
SspMI CTAG 1 cut(s) 840
StyD4I CCNGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 238
TaqI TCGA 1 cut(s) 177
TasI AATT 6 cut(s) 27, 121, 414, 788, 793, 856
TfiI GAWTC 2 cut(s) 223, 704
Tru1I TTAA 6 cut(s) 114, 252, 294, 747, 771, 819
Tru9I TTAA 6 cut(s) 114, 252, 294, 747, 771, 819
TscAI CASTG 3 cut(s) 64, 352, 638
TseFI GTSAC 3 cut(s) 238, 418, 559
TseI GCWGC 3 cut(s) 479, 775, 836
Tsp45I GTSAC 3 cut(s) 238, 418, 559
TspDTI ATGAA 4 cut(s) 76, 393, 506, 689
TspGWI ACGGA 1 cut(s) 471
TspRI CASTG 3 cut(s) 64, 352, 638
XapI RAATTY 1 cut(s) 856
XceI RCATGY 3 cut(s) 520, 817, 963
XmnI GAANNNNTTC 1 cut(s) 688
XspI CTAG 1 cut(s) 840
Zsp2I ATGCAT 2 cut(s) 148, 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.