Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Forward (+)

61010665 .. 61012449

Gene Structure 1785 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGGGGAAGCAACGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGACACTTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACACCGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGAAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCTGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCGGGATTGGCCGCTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATGCACTTCGAAACAAGAGAAGGAAAAATCGAAGGGATTGCATACCGGTGGAACTACATGGTTGAAAACCGTTCCTATTAAGCAGCTCTCATGTCAATTCAATTTTGAGGATTTGGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGCAAATCGATGGGCGAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGAGGGGGATCTTTTCAAGCTACGTACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGCCAAGATCAACAACACCCTGCAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

262

Amino Acids

29.08

Weight (kDa)

6.98

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	5 - 174	5.6e-81	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	38 - 167	1.3e-16	PI-PLC X
PI-PLC_cat	PF26178	181 - 252	1.9e-23	PI-PLC-like catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	246, 440, 656
AclWI	GGATC	1 cut(s)	697
AcoI	YGGCCR	1 cut(s)	437
AcsI	RAATTY	1 cut(s)	646
AfaI	GTAC	1 cut(s)	707
AfiI	CCNNNNNNNGG	1 cut(s)	425
AgeI	ACCGGT	1 cut(s)	527
AgsI	TTSAA	8 cut(s)	34, 223, 274, 344, 373, 547, 583, 698
AluBI	AGCT	5 cut(s)	260, 347, 377, 568, 701
AluI	AGCT	5 cut(s)	260, 347, 377, 568, 701
AlwI	GGATC	1 cut(s)	697
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	4 cut(s)	377, 565, 626, 629
ApoI	RAATTY	1 cut(s)	646
AsiGI	ACCGGT	1 cut(s)	527
AsuII	TTCGAA	1 cut(s)	491
BanII	GRGCYC	1 cut(s)	169
BauI	CACGAG	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	4 cut(s)	364, 577, 613, 616
BccI	CCATC	2 cut(s)	94, 633
BcgI	CGANNNNNNTGC	4 cut(s)	502, 536, 731, 765
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	5 cut(s)	378, 440, 566, 627, 630
BlsI	GCNGC	5 cut(s)	379, 441, 567, 628, 631
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	134
Bpu14I	TTCGAA	1 cut(s)	491
Bsa29I	ATCGAT	1 cut(s)	637
BsaAI	YACGTR	1 cut(s)	705
BsaWI	WCCGGW	2 cut(s)	403, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	425
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	637
BseGI	GGATG	1 cut(s)	740
BseLI	CCNNNNNNNGG	1 cut(s)	425
BseNI	ACTGG	1 cut(s)	401
BseRI	GAGGAG	2 cut(s)	688, 696
BseXI	GCAGC	4 cut(s)	364, 577, 613, 616
BshFI	GGCC	1 cut(s)	439
BshTI	ACCGGT	1 cut(s)	527
BshVI	ATCGAT	1 cut(s)	637
BsiSI	CCGG	2 cut(s)	404, 528
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	1 cut(s)	425
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	439
Bsp119I	TTCGAA	1 cut(s)	491
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	689, 764
BspACI	CCGC	3 cut(s)	246, 440, 656
BspANI	GGCC	1 cut(s)	439
BspDI	ATCGAT	1 cut(s)	637
BspPI	GGATC	1 cut(s)	697
BspT104I	TTCGAA	1 cut(s)	491
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	527
BssMI	GATC	2 cut(s)	689, 764
BssSI	CACGAG	1 cut(s)	104
Bst2BI	CACGAG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	553
BstBAI	YACGTR	1 cut(s)	705
BstBI	TTCGAA	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	258, 605
BstDEI	CTNAG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	740
BstKTI	GATC	2 cut(s)	692, 767
BstMBI	GATC	2 cut(s)	689, 764
BstNSI	RCATGY	3 cut(s)	418, 607, 756
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSFI	CTRYAG	1 cut(s)	261
BstSNI	TACGTA	1 cut(s)	705
BstV1I	GCAGC	4 cut(s)	364, 577, 613, 616
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu15I	ATCGAT	1 cut(s)	637
BsuRI	GGCC	1 cut(s)	439
BsuTUI	ATCGAT	1 cut(s)	637
BtsCI	GGATG	1 cut(s)	740
Cac8I	GCNNGC	2 cut(s)	258, 605
Cfr10I	RCCGGY	1 cut(s)	527
ClaI	ATCGAT	1 cut(s)	637
Csp6I	GTAC	1 cut(s)	706
CspAI	ACCGGT	1 cut(s)	527
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviAII	CATG	7 cut(s)	236, 415, 540, 573, 604, 749, 753
CviQI	GTAC	1 cut(s)	706
DdeI	CTNAG	1 cut(s)	462
DpnI	GATC	2 cut(s)	691, 766
DpnII	GATC	2 cut(s)	689, 764
DraI	TTTAAA	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	437
Eco105I	TACGTA	1 cut(s)	705
Eco24I	GRGCYC	1 cut(s)	169
EcoT22I	ATGCAT	2 cut(s)	46, 754
EcoT38I	GRGCYC	1 cut(s)	169
FaeI	CATG	7 cut(s)	239, 418, 543, 576, 607, 752, 756
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	7 cut(s)	235, 414, 539, 572, 603, 748, 752
FauNDI	CATATG	1 cut(s)	728
Fnu4HI	GCNGC	5 cut(s)	378, 440, 566, 627, 630
FokI	GGATG	1 cut(s)	747
FriOI	GRGCYC	1 cut(s)	169
Fsp4HI	GCNGC	5 cut(s)	378, 440, 566, 627, 630
GluI	GCNGC	5 cut(s)	378, 440, 566, 627, 630
HaeIII	GGCC	1 cut(s)	439
HapII	CCGG	2 cut(s)	404, 528
Hin1II	CATG	7 cut(s)	239, 418, 543, 576, 607, 752, 756
HinfI	GANTC	2 cut(s)	98, 120
HpaII	CCGG	2 cut(s)	404, 528
Hpy166II	GTNNAC	1 cut(s)	708
Hpy188III	TCNNGA	3 cut(s)	117, 124, 431
Hpy8I	GTNNAC	1 cut(s)	708
HpyAV	CCTTC	5 cut(s)	71, 123, 229, 496, 508
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	704
HpyCH4V	TGCA	6 cut(s)	44, 486, 523, 632, 752, 780
HpyF3I	CTNAG	1 cut(s)	462
HpySE526I	ACGT	1 cut(s)	704
Hsp92II	CATG	7 cut(s)	239, 418, 543, 576, 607, 752, 756
Kzo9I	GATC	2 cut(s)	689, 764
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	8 cut(s)	190, 270, 318, 366, 382, 417, 428, 541
Lsp1109I	GCAGC	4 cut(s)	364, 577, 613, 616
MaeII	ACGT	1 cut(s)	704
MaeIII	GTNAC	5 cut(s)	108, 136, 316, 457, 737
MalI	GATC	2 cut(s)	691, 766
MboI	GATC	2 cut(s)	689, 764
MboII	GAAGA	2 cut(s)	139, 320
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	1 cut(s)	169
MluCI	AATT	5 cut(s)	19, 312, 578, 583, 646
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	6 cut(s)	113, 325, 583, 666, 674, 677
Mph1103I	ATGCAT	2 cut(s)	46, 754
MseI	TTAA	4 cut(s)	150, 192, 561, 609
MslI	CAYNNNNRTG	2 cut(s)	528, 753
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	2 cut(s)	404, 528
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	2 cut(s)	689, 764
NlaIII	CATG	7 cut(s)	239, 418, 543, 576, 607, 752, 756
NmuCI	GTSAC	3 cut(s)	136, 316, 457
NsiI	ATGCAT	2 cut(s)	46, 754
NspI	RCATGY	3 cut(s)	418, 607, 756
NspV	TTCGAA	1 cut(s)	491
PaeI	GCATGC	1 cut(s)	607
PfeI	GAWTC	1 cut(s)	120
PinAI	ACCGGT	1 cut(s)	527
PkrI	GCNGC	5 cut(s)	379, 441, 567, 628, 631
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	705
PshAI	GACNNNNGTC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	1 cut(s)	707
RsaNI	GTAC	1 cut(s)	706
RseI	CAYNNNNRTG	2 cut(s)	528, 753
SaqAI	TTAA	4 cut(s)	150, 192, 561, 609
SatI	GCNGC	5 cut(s)	378, 440, 566, 627, 630
Sau3AI	GATC	2 cut(s)	689, 764
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	1 cut(s)	169
SetI	ASST	9 cut(s)	115, 185, 262, 349, 379, 570, 703, 707, 786
SfcI	CTRYAG	1 cut(s)	261
SfuI	TTCGAA	1 cut(s)	491
SmiMI	CAYNNNNRTG	2 cut(s)	528, 753
SnaBI	TACGTA	1 cut(s)	705
SphI	GCATGC	1 cut(s)	607
Sse9I	AATT	5 cut(s)	19, 312, 578, 583, 646
SsiI	CCGC	3 cut(s)	246, 440, 656
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	707
TaqI	TCGA	4 cut(s)	75, 491, 512, 637
TasI	AATT	5 cut(s)	19, 312, 578, 583, 646
TauI	GCSGC	1 cut(s)	442
TfiI	GAWTC	1 cut(s)	120
Tru1I	TTAA	4 cut(s)	150, 192, 561, 609
Tru9I	TTAA	4 cut(s)	150, 192, 561, 609
TseFI	GTSAC	3 cut(s)	136, 316, 457
TseI	GCWGC	4 cut(s)	377, 565, 626, 629
Tsp45I	GTSAC	3 cut(s)	136, 316, 457
TspDTI	ATGAA	2 cut(s)	291, 404
TspGWI	ACGGA	2 cut(s)	110, 369
XapI	RAATTY	1 cut(s)	646
XceI	RCATGY	3 cut(s)	418, 607, 756
Zsp2I	ATGCAT	2 cut(s)	46, 754

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.