Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Forward (+)

81003755 .. 81033466

Gene Structure 29712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG580800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTACTTCTGGTTACGTCTCTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGACGGCCAGTGCAAGCTCTTAGATCAGTGCTCGACAGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCAGTTGCCCTTTTGAGTTTGAAGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAGTTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCCATCGAAGGAGAGCCATCTCATACTGGAGCCTCTTGTTTTCCCAGTCAAGAAGACACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTGATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCAGTCCTTATTCGAAGGAGAATGTAATGACGACACTGCATTTGAGCCAGCTATTGATACATTAAACGAAATCCAAGCATTTTTATCAGCAAATCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGACGCTCCAAACGGACTGACAAATGTTTTCAAATCTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAAAATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGCGATATGGTTGCCAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACGAGTATGGAGATGATGGAATGGAAGAGGGAAGCTGTTCAAACAGAGGTGAATCGTCGCCTCTAAATGACAAGACTAAATCATTGGTGCTGGTTAACCATTTTCAGTCACCTCCCATTAAGCAGCTCTCATGTCTATTCAATTCTGAGGATTTGGTTAGCAAGCTTAACACTTGCTCTGGTGCTGCTGGAAACCGATGGGCGAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGGGGGGGATCGTTTCAAGCTACAGACACTCTTAATGGAGAACTCATATGTGGATGTAACGATATCCATGCATGTGTGCCAGGATCAACAACACCCTGTAAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

367

Amino Acids

40.25

Weight (kDa)

4.59

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI-PLC_cat	PF26178	76 - 357	3.1e-138	PI-PLC-like catalytic domain
PI-PLC_X	PF26146	99 - 296	3e-23	PI-PLC X

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	140, 647, 971
AclWI	GGATC	2 cut(s)	1012, 1087
AcoI	YGGCCR	2 cut(s)	91, 644
AcsI	RAATTY	1 cut(s)	961
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgsI	TTSAA	9 cut(s)	176, 226, 244, 580, 699, 755, 798, 898, 1013
AjnI	CCWGG	2 cut(s)	511, 1075
AluBI	AGCT	9 cut(s)	21, 80, 103, 220, 467, 792, 883, 922, 1016
AluI	AGCT	9 cut(s)	21, 80, 103, 220, 467, 792, 883, 922, 1016
Alw21I	GWGCWC	1 cut(s)	119
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	2 cut(s)	1012, 1087
AoxI	GGCC	2 cut(s)	91, 644
ApeKI	GCWGC	2 cut(s)	880, 941
ApoI	RAATTY	1 cut(s)	961
ArsI	GACNNNNNNTTYG	2 cut(s)	440, 472
Asp700I	GAANNNNTTC	1 cut(s)	793
AsuHPI	GGTGA	2 cut(s)	818, 858
AsuII	TTCGAA	1 cut(s)	429
BanII	GRGCYC	1 cut(s)	373
BbsI	GAAGAC	2 cut(s)	11, 339
Bbv12I	GWGCWC	1 cut(s)	119
BbvI	GCAGC	2 cut(s)	892, 928
BccI	CCATC	4 cut(s)	290, 304, 767, 948
BceAI	ACGGC	1 cut(s)	106
BcgI	CGANNNNNNTGC	6 cut(s)	647, 681, 710, 744, 1046, 1080
BciT130I	CCWGG	2 cut(s)	513, 1077
BcoDI	GTCTC	1 cut(s)	54
BfmI	CTRYAG	1 cut(s)	1017
BisI	GCNGC	3 cut(s)	647, 881, 942
BlsI	GCNGC	3 cut(s)	648, 882, 943
Bme1390I	CCNGG	2 cut(s)	513, 1077
BmiI	GGNNCC	2 cut(s)	181, 310
BmrFI	CCNGG	2 cut(s)	513, 1077
BmrI	ACTGGG	1 cut(s)	318
BmsI	GCATC	1 cut(s)	366
BmuI	ACTGGG	1 cut(s)	318
BpiI	GAAGAC	2 cut(s)	11, 339
BpmI	CTGGAG	2 cut(s)	166, 327
Bpu14I	TTCGAA	1 cut(s)	429
BsaWI	WCCGGW	1 cut(s)	610
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse1I	ACTGG	6 cut(s)	94, 310, 324, 418, 608, 736
BseBI	CCWGG	2 cut(s)	513, 1077
BseGI	GGATG	1 cut(s)	1055
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMII	CTCAG	1 cut(s)	894
BseNI	ACTGG	6 cut(s)	94, 310, 324, 418, 608, 736
BseRI	GAGGAG	1 cut(s)	1003
BseXI	GCAGC	2 cut(s)	892, 928
BshFI	GGCC	2 cut(s)	93, 646
BsiHKAI	GWGCWC	1 cut(s)	119
BsiSI	CCGG	2 cut(s)	588, 611
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	1 cut(s)	54
BsmBI	CGTCTC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	93, 646
Bsp119I	TTCGAA	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	119, 373
Bsp143I	GATC	4 cut(s)	109, 194, 1004, 1079
BspACI	CCGC	3 cut(s)	140, 647, 971
BspANI	GGCC	2 cut(s)	93, 646
BspCNI	CTCAG	1 cut(s)	895
BspLI	GGNNCC	2 cut(s)	181, 310
BspPI	GGATC	2 cut(s)	1012, 1087
BspT104I	TTCGAA	1 cut(s)	429
BsrI	ACTGG	6 cut(s)	94, 310, 324, 418, 608, 736
BssMI	GATC	4 cut(s)	109, 194, 1004, 1079
Bst2UI	CCWGG	2 cut(s)	513, 1077
Bst4CI	ACNGT	2 cut(s)	152, 340
Bst6I	CTCTTC	1 cut(s)	777
BstBI	TTCGAA	1 cut(s)	429
BstC8I	GCNNGC	4 cut(s)	82, 101, 465, 920
BstDEI	CTNAG	2 cut(s)	106, 903
BstF5I	GGATG	1 cut(s)	1055
BstKTI	GATC	4 cut(s)	112, 197, 1007, 1082
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	4 cut(s)	109, 194, 1004, 1079
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstNI	CCWGG	2 cut(s)	513, 1077
BstNSI	RCATGY	1 cut(s)	1071
BstSCI	CCNGG	2 cut(s)	511, 1075
BstSFI	CTRYAG	1 cut(s)	1017
BstV1I	GCAGC	2 cut(s)	892, 928
BstV2I	GAAGAC	2 cut(s)	11, 339
BsuRI	GGCC	2 cut(s)	93, 646
BtsCI	GGATG	1 cut(s)	1055
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	5 cut(s)	101, 119, 336, 450, 743
Cac8I	GCNNGC	4 cut(s)	82, 101, 465, 920
CseI	GACGC	1 cut(s)	560
CspCI	CAANNNNNGTGG	2 cut(s)	973, 1008
CviAII	CATG	5 cut(s)	66, 748, 888, 1064, 1068
DdeI	CTNAG	2 cut(s)	106, 903
DpnI	GATC	4 cut(s)	111, 196, 1006, 1081
DpnII	GATC	4 cut(s)	109, 194, 1004, 1079
DraI	TTTAAA	1 cut(s)	397
EaeI	YGGCCR	2 cut(s)	91, 644
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco24I	GRGCYC	1 cut(s)	373
Eco32I	GATATC	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	511, 1075
EcoRV	GATATC	1 cut(s)	1060
EcoT22I	ATGCAT	2 cut(s)	256, 1069
EcoT38I	GRGCYC	1 cut(s)	373
Esp3I	CGTCTC	1 cut(s)	54
FaeI	CATG	5 cut(s)	69, 751, 891, 1067, 1071
FatI	CATG	5 cut(s)	65, 747, 887, 1063, 1067
FauI	CCCGC	1 cut(s)	133
FauNDI	CATATG	1 cut(s)	1043
Fnu4HI	GCNGC	3 cut(s)	647, 881, 942
FokI	GGATG	1 cut(s)	1062
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	3 cut(s)	647, 881, 942
GluI	GCNGC	3 cut(s)	647, 881, 942
GsuI	CTGGAG	2 cut(s)	166, 327
HaeIII	GGCC	2 cut(s)	93, 646
HapII	CCGG	2 cut(s)	588, 611
HgaI	GACGC	1 cut(s)	560
Hin1II	CATG	5 cut(s)	69, 751, 891, 1067, 1071
HincII	GTYRAC	2 cut(s)	550, 853
HindII	GTYRAC	2 cut(s)	550, 853
HindIII	AAGCTT	1 cut(s)	920
HinfI	GANTC	2 cut(s)	10, 809
HpaI	GTTAAC	1 cut(s)	853
HpaII	CCGG	2 cut(s)	588, 611
HphI	GGTGA	2 cut(s)	818, 858
Hpy166II	GTNNAC	2 cut(s)	550, 853
Hpy188I	TCNGA	3 cut(s)	88, 721, 904
Hpy188III	TCNNGA	3 cut(s)	183, 329, 638
Hpy8I	GTNNAC	2 cut(s)	550, 853
Hpy99I	CGWCG	2 cut(s)	92, 817
HpyAV	CCTTC	6 cut(s)	35, 170, 281, 425, 703, 716
HpyCH4III	ACNGT	2 cut(s)	152, 340
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	5 cut(s)	99, 254, 455, 731, 1067
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	2 cut(s)	106, 903
HpySE526I	ACGT	1 cut(s)	47
Hsp92II	CATG	5 cut(s)	69, 751, 891, 1067, 1071
KspAI	GTTAAC	1 cut(s)	853
Kzo9I	GATC	4 cut(s)	109, 194, 1004, 1079
LmnI	GCTCC	4 cut(s)	89, 185, 308, 559
Lsp1109I	GCAGC	2 cut(s)	892, 928
LweI	GCATC	1 cut(s)	366
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	5 cut(s)	43, 340, 523, 864, 1052
MalI	GATC	4 cut(s)	111, 196, 1006, 1081
MboI	GATC	4 cut(s)	109, 194, 1004, 1079
MboII	GAAGA	3 cut(s)	16, 344, 794
MhlI	GDGCHC	2 cut(s)	119, 373
MluCI	AATT	4 cut(s)	212, 519, 898, 961
MlyI	GAGTC	1 cut(s)	4
MmeI	TCCRAC	1 cut(s)	111
Mph1103I	ATGCAT	2 cut(s)	256, 1069
MroXI	GAANNNNTTC	1 cut(s)	793
MseI	TTAA	7 cut(s)	354, 396, 479, 852, 876, 924, 1029
MslI	CAYNNNNRTG	2 cut(s)	736, 1068
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	2 cut(s)	588, 611
MspR9I	CCNGG	2 cut(s)	513, 1077
MvaI	CCWGG	2 cut(s)	513, 1077
MwoI	GCNNNNNNNGC	1 cut(s)	90
NdeI	CATATG	1 cut(s)	1043
NdeII	GATC	4 cut(s)	109, 194, 1004, 1079
NlaIII	CATG	5 cut(s)	69, 751, 891, 1067, 1071
NlaIV	GGNNCC	2 cut(s)	181, 310
NmuCI	GTSAC	3 cut(s)	340, 523, 864
NsiI	ATGCAT	2 cut(s)	256, 1069
NspI	RCATGY	1 cut(s)	1071
NspV	TTCGAA	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	793
PfeI	GAWTC	1 cut(s)	809
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	511
PkrI	GCNGC	3 cut(s)	648, 882, 943
PleI	GAGTC	1 cut(s)	4
PpsI	GAGTC	1 cut(s)	4
Psp6I	CCWGG	2 cut(s)	511, 1075
PspGI	CCWGG	2 cut(s)	511, 1075
PspN4I	GGNNCC	2 cut(s)	181, 310
PsyI	GACNNNGTC	1 cut(s)	338
RseI	CAYNNNNRTG	2 cut(s)	736, 1068
SaqAI	TTAA	7 cut(s)	354, 396, 479, 852, 876, 924, 1029
SatI	GCNGC	3 cut(s)	647, 881, 942
Sau3AI	GATC	4 cut(s)	109, 194, 1004, 1079
SchI	GAGTC	1 cut(s)	4
ScrFI	CCNGG	2 cut(s)	513, 1077
SduI	GDGCHC	2 cut(s)	119, 373
SfaNI	GCATC	1 cut(s)	366
SfcI	CTRYAG	1 cut(s)	1017
SfuI	TTCGAA	1 cut(s)	429
SmiMI	CAYNNNNRTG	2 cut(s)	736, 1068
Sse9I	AATT	4 cut(s)	212, 519, 898, 961
SsiI	CCGC	3 cut(s)	140, 647, 971
StyD4I	CCNGG	2 cut(s)	511, 1075
TaaI	ACNGT	2 cut(s)	152, 340
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	3 cut(s)	119, 285, 429
TasI	AATT	4 cut(s)	212, 519, 898, 961
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	7 cut(s)	354, 396, 479, 852, 876, 924, 1029
Tru9I	TTAA	7 cut(s)	354, 396, 479, 852, 876, 924, 1029
TscAI	CASTG	5 cut(s)	101, 119, 343, 457, 743
TseFI	GTSAC	3 cut(s)	340, 523, 864
TseI	GCWGC	2 cut(s)	880, 941
Tsp45I	GTSAC	3 cut(s)	340, 523, 864
TspDTI	ATGAA	3 cut(s)	17, 54, 611
TspGWI	ACGGA	2 cut(s)	141, 576
TspRI	CASTG	5 cut(s)	101, 119, 343, 457, 743
Tth111I	GACNNNGTC	1 cut(s)	338
XapI	RAATTY	1 cut(s)	961
XceI	RCATGY	1 cut(s)	1071
XmnI	GAANNNNTTC	1 cut(s)	793
Zsp2I	ATGCAT	2 cut(s)	256, 1069

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.