Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008502.1

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Forward (+)

27377 .. 32237

Gene Structure 4861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008502.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

atgaagacgactcggcacagcttccttctggttctagttctggttatggctcttgctgtgttttcatgtgtcgtcatagcttgctccgatggacagtgcaagctcttagatcagtgctcgacggacggagattgtgaggcggggctttactgtttcggttgcccttcggagttttctggctccagatgtgtgagatcaaccaccaccaaccaattccagcttttgaataattctctaccattcaacaaatatgcatttttgacaacccacaatgcttttgctatcgaaggagagccatctcataccggagtccctcgtgttaccttcacgaatcaagaagacactgtcactcaacaacttaacaatggagttagagccctaatgcttgatacctatgattttcaaggagacgtctggttgtgccattccttcaaaggaaaatgccatgactacactgcatttgagccagctatagatactttgaatgaaatccaagcatttttatcagcaaacccaggagaaattgtgacattgatattagaggactatgttgaagctccaaacggattgacaaatgttttcaaagctgccggattgatgaaatactggtttccggtatcaaacatgcccaaaagtggtcaggattggccgctggttagcgatatggtcactaagaaccaaaggctacttgtattcacttcaaaacaagagaaggaacaatccgaagggattgcataccagtggaactacatggttgaaaaccaatatggaaatgatggaatgaaagcgggaagctgttcaaacagagctgaatcgtctcctctaaatgacaagactaaatcattggtgttggttaactattttgggtcagttcccattaagcagctctcatgtcaattcaattctgaggatttggttagcatgcttaacacttgctatggtgctgctggaaatcgatgggcaaattttgttgcggttgatttttacaagaggagtggaggagggggatcatttcaagctacagacactctcaatggagaactcatatgtggatgtaacgatgtccatgcatgtgtgcacttgaggtcgagcgccgaatctcctcagagatacagagttctcgagcatcagcgtggaggtggagctatgatgctggactatctgggaagcagtgggtggagatcggggagagagagaggggagagagaaagagaaactggcggcgtcaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

410

Amino Acids

45.32

Weight (kDa)

5.56

Isoelectric Point (pI)

37.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	414
AciI	CCGC	5 cut(s)	140, 650, 788, 974, 1221
AclWI	GGATC	1 cut(s)	1015
AcoI	YGGCCR	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	964
AcyI	GRCGYC	2 cut(s)	411, 1224
AfiI	CCNNNNNNNGG	1 cut(s)	635
AjnI	CCWGG	1 cut(s)	514
Alw21I	GWGCWC	2 cut(s)	119, 1080
Alw26I	GTCTC	2 cut(s)	402, 822
Alw44I	GTGCAC	1 cut(s)	1076
AlwI	GGATC	1 cut(s)	1015
Ama87I	CYCGRG	1 cut(s)	1121
AoxI	GGCC	1 cut(s)	647
ApaLI	GTGCAC	1 cut(s)	1076
ApeKI	GCWGC	3 cut(s)	587, 883, 944
ApoI	RAATTY	1 cut(s)	964
Asp700I	GAANNNNTTC	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	1094
AvaI	CYCGRG	1 cut(s)	1121
BaeGI	GKGCMC	1 cut(s)	1080
BanII	GRGCYC	1 cut(s)	379
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	2 cut(s)	11, 345
Bbv12I	GWGCWC	2 cut(s)	119, 1080
BbvI	GCAGC	3 cut(s)	574, 895, 931
BccI	CCATC	4 cut(s)	83, 304, 770, 951
BcgI	CGANNNNNNTGC	4 cut(s)	713, 747, 1049, 1083
BciT130I	CCWGG	1 cut(s)	516
BcoDI	GTCTC	2 cut(s)	402, 822
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	2 cut(s)	471, 1020
BfoI	RGCGCY	1 cut(s)	1095
BisI	GCNGC	5 cut(s)	588, 650, 884, 945, 1222
BlsI	GCNGC	5 cut(s)	589, 651, 885, 946, 1223
Bme1390I	CCNGG	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	1121
BmiI	GGNNCC	1 cut(s)	181
BmrFI	CCNGG	1 cut(s)	516
BmsI	GCATC	2 cut(s)	1135, 1140
BpiI	GAAGAC	2 cut(s)	11, 345
BpmI	CTGGAG	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	1102
Bsa29I	ATCGAT	1 cut(s)	955
BsaHI	GRCGYC	2 cut(s)	411, 1224
BsaJI	CCNNGG	1 cut(s)	514
BsaWI	WCCGGW	2 cut(s)	305, 613
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	635
Bse1I	ACTGG	3 cut(s)	611, 739, 1222
BseBI	CCWGG	1 cut(s)	516
BseCI	ATCGAT	1 cut(s)	955
BseDI	CCNNGG	1 cut(s)	514
BseGI	GGATG	1 cut(s)	1058
BseLI	CCNNNNNNNGG	1 cut(s)	635
BseMII	CTCAG	2 cut(s)	897, 1118
BseNI	ACTGG	3 cut(s)	611, 739, 1222
BseRI	GAGGAG	4 cut(s)	810, 1006, 1014, 1092
BseSI	GKGCMC	1 cut(s)	1080
BseXI	GCAGC	3 cut(s)	574, 895, 931
BshFI	GGCC	1 cut(s)	649
BshVI	ATCGAT	1 cut(s)	955
BsiHKAI	GWGCWC	2 cut(s)	119, 1080
BsiHKCI	CYCGRG	1 cut(s)	1121
BsiSI	CCGG	3 cut(s)	306, 591, 614
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	635
BsmAI	GTCTC	2 cut(s)	402, 822
BsmBI	CGTCTC	2 cut(s)	402, 822
BsmFI	GGGAC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	649
BsoBI	CYCGRG	1 cut(s)	1121
Bsp1286I	GDGCHC	3 cut(s)	119, 379, 1080
Bsp143I	GATC	4 cut(s)	109, 194, 1007, 1181
BspACI	CCGC	5 cut(s)	140, 650, 788, 974, 1221
BspANI	GGCC	1 cut(s)	649
BspCNI	CTCAG	2 cut(s)	898, 1117
BspDI	ATCGAT	1 cut(s)	955
BspLI	GGNNCC	1 cut(s)	181
BspPI	GGATC	1 cut(s)	1015
BsrI	ACTGG	3 cut(s)	611, 739, 1222
BssECI	CCNNGG	1 cut(s)	514
BssMI	GATC	4 cut(s)	109, 194, 1007, 1181
BssNI	GRCGYC	2 cut(s)	411, 1224
BssSI	CACGAG	1 cut(s)	315
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	3 cut(s)	96, 152, 346
BstACI	GRCGYC	2 cut(s)	411, 1224
BstC8I	GCNNGC	4 cut(s)	82, 101, 468, 923
BstDEI	CTNAG	4 cut(s)	106, 672, 906, 1104
BstF5I	GGATG	1 cut(s)	1058
BstH2I	RGCGCY	1 cut(s)	1095
BstHHI	GCGC	1 cut(s)	1094
BstKTI	GATC	4 cut(s)	112, 197, 1010, 1184
BstMAI	GTCTC	2 cut(s)	402, 822
BstMBI	GATC	4 cut(s)	109, 194, 1007, 1181
BstNI	CCWGG	1 cut(s)	516
BstNSI	RCATGY	3 cut(s)	628, 925, 1074
BstSCI	CCNGG	1 cut(s)	514
BstSFI	CTRYAG	2 cut(s)	471, 1020
BstSLI	GKGCMC	1 cut(s)	1080
BstV1I	GCAGC	3 cut(s)	574, 895, 931
BstV2I	GAAGAC	2 cut(s)	11, 345
Bsu15I	ATCGAT	1 cut(s)	955
BsuRI	GGCC	1 cut(s)	649
BsuTUI	ATCGAT	1 cut(s)	955
BtsCI	GGATG	1 cut(s)	1058
BtsI	GCAGTG	2 cut(s)	453, 1177
BtsIMutI	CAGTG	6 cut(s)	101, 119, 342, 453, 746, 1177
Cac8I	GCNNGC	4 cut(s)	82, 101, 468, 923
CfoI	GCGC	1 cut(s)	1094
ClaI	ATCGAT	1 cut(s)	955
CseI	GACGC	1 cut(s)	1213
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviAII	CATG	8 cut(s)	66, 446, 625, 751, 891, 922, 1067, 1071
DdeI	CTNAG	4 cut(s)	106, 672, 906, 1104
DpnI	GATC	4 cut(s)	111, 196, 1009, 1183
DpnII	GATC	4 cut(s)	109, 194, 1007, 1181
EaeI	YGGCCR	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	379
Eco88I	CYCGRG	1 cut(s)	1121
EcoRII	CCWGG	1 cut(s)	514
EcoT22I	ATGCAT	2 cut(s)	256, 1072
EcoT38I	GRGCYC	1 cut(s)	379
Esp3I	CGTCTC	2 cut(s)	402, 822
FaeI	CATG	8 cut(s)	69, 449, 628, 754, 894, 925, 1070, 1074
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	8 cut(s)	65, 445, 624, 750, 890, 921, 1066, 1070
FauI	CCCGC	2 cut(s)	133, 781
FauNDI	CATATG	1 cut(s)	1046
Fnu4HI	GCNGC	5 cut(s)	588, 650, 884, 945, 1222
FokI	GGATG	1 cut(s)	1065
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	5 cut(s)	588, 650, 884, 945, 1222
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	1093
GluI	GCNGC	5 cut(s)	588, 650, 884, 945, 1222
GsuI	CTGGAG	1 cut(s)	166
HaeII	RGCGCY	1 cut(s)	1095
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	3 cut(s)	306, 591, 614
HgaI	GACGC	1 cut(s)	1213
HhaI	GCGC	1 cut(s)	1094
Hin1I	GRCGYC	2 cut(s)	411, 1224
Hin1II	CATG	8 cut(s)	69, 449, 628, 754, 894, 925, 1070, 1074
Hin6I	GCGC	1 cut(s)	1092
HinP1I	GCGC	1 cut(s)	1092
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HinfI	GANTC	5 cut(s)	10, 309, 331, 812, 1097
HpaI	GTTAAC	1 cut(s)	856
HpaII	CCGG	3 cut(s)	306, 591, 614
Hpy166II	GTNNAC	2 cut(s)	856, 1078
Hpy188I	TCNGA	5 cut(s)	88, 169, 724, 907, 1107
Hpy188III	TCNNGA	5 cut(s)	183, 328, 335, 641, 1121
Hpy8I	GTNNAC	2 cut(s)	856, 1078
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	7 cut(s)	35, 174, 281, 334, 439, 706, 719
HpyCH4III	ACNGT	3 cut(s)	96, 152, 346
HpyCH4IV	ACGT	1 cut(s)	411
HpyCH4V	TGCA	6 cut(s)	99, 254, 458, 734, 1070, 1078
HpyF3I	CTNAG	4 cut(s)	106, 672, 906, 1104
HpySE526I	ACGT	1 cut(s)	411
Hsp92I	GRCGYC	2 cut(s)	411, 1224
Hsp92II	CATG	8 cut(s)	69, 449, 628, 754, 894, 925, 1070, 1074
HspAI	GCGC	1 cut(s)	1092
KspAI	GTTAAC	1 cut(s)	856
Kzo9I	GATC	4 cut(s)	109, 194, 1007, 1181
LmnI	GCTCC	4 cut(s)	89, 185, 562, 1142
Lsp1109I	GCAGC	3 cut(s)	574, 895, 931
LweI	GCATC	2 cut(s)	1135, 1140
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	411
MaeIII	GTNAC	5 cut(s)	319, 346, 526, 667, 1055
MalI	GATC	4 cut(s)	111, 196, 1009, 1183
MboI	GATC	4 cut(s)	109, 194, 1007, 1181
MboII	GAAGA	2 cut(s)	16, 350
MhlI	GDGCHC	3 cut(s)	119, 379, 1080
MluCI	AATT	6 cut(s)	212, 229, 522, 896, 901, 964
MlyI	GAGTC	2 cut(s)	4, 318
Mph1103I	ATGCAT	2 cut(s)	256, 1072
MroXI	GAANNNNTTC	1 cut(s)	796
MseI	TTAA	4 cut(s)	360, 855, 879, 927
MslI	CAYNNNNRTG	3 cut(s)	739, 1071, 1131
MspA1I	CMGCKG	1 cut(s)	652
MspI	CCGG	3 cut(s)	306, 591, 614
MspR9I	CCNGG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	516
NdeI	CATATG	1 cut(s)	1046
NdeII	GATC	4 cut(s)	109, 194, 1007, 1181
NlaIII	CATG	8 cut(s)	69, 449, 628, 754, 894, 925, 1070, 1074
NlaIV	GGNNCC	1 cut(s)	181
NmuCI	GTSAC	3 cut(s)	346, 526, 667
NsiI	ATGCAT	2 cut(s)	256, 1072
NspI	RCATGY	3 cut(s)	628, 925, 1074
PaeI	GCATGC	1 cut(s)	925
PaeR7I	CTCGAG	1 cut(s)	1121
PdmI	GAANNNNTTC	1 cut(s)	796
PfeI	GAWTC	3 cut(s)	331, 812, 1097
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	589, 651, 885, 946, 1223
PleI	GAGTC	2 cut(s)	4, 317
PpsI	GAGTC	2 cut(s)	4, 317
Psp6I	CCWGG	1 cut(s)	514
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	1 cut(s)	181
PsyI	GACNNNGTC	1 cut(s)	344
RseI	CAYNNNNRTG	3 cut(s)	739, 1071, 1131
SaqAI	TTAA	4 cut(s)	360, 855, 879, 927
SatI	GCNGC	5 cut(s)	588, 650, 884, 945, 1222
Sau3AI	GATC	4 cut(s)	109, 194, 1007, 1181
SchI	GAGTC	2 cut(s)	4, 318
ScrFI	CCNGG	1 cut(s)	516
SduI	GDGCHC	3 cut(s)	119, 379, 1080
SfaNI	GCATC	2 cut(s)	1135, 1140
SfcI	CTRYAG	2 cut(s)	471, 1020
Sfr274I	CTCGAG	1 cut(s)	1121
SlaI	CTCGAG	1 cut(s)	1121
SmiMI	CAYNNNNRTG	3 cut(s)	739, 1071, 1131
SmlI	CTYRAG	2 cut(s)	1081, 1121
SmoI	CTYRAG	2 cut(s)	1081, 1121
SphI	GCATGC	1 cut(s)	925
Sse9I	AATT	6 cut(s)	212, 229, 522, 896, 901, 964
SsiI	CCGC	5 cut(s)	140, 650, 788, 974, 1221
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	514
TaaI	ACNGT	3 cut(s)	96, 152, 346
TaiI	ACGT	1 cut(s)	414
TaqI	TCGA	5 cut(s)	119, 285, 955, 1088, 1122
TasI	AATT	6 cut(s)	212, 229, 522, 896, 901, 964
TauI	GCSGC	2 cut(s)	652, 1224
TfiI	GAWTC	3 cut(s)	331, 812, 1097
Tru1I	TTAA	4 cut(s)	360, 855, 879, 927
Tru9I	TTAA	4 cut(s)	360, 855, 879, 927
TscAI	CASTG	6 cut(s)	101, 119, 349, 460, 746, 1177
TseFI	GTSAC	3 cut(s)	346, 526, 667
TseI	GCWGC	3 cut(s)	587, 883, 944
Tsp45I	GTSAC	3 cut(s)	346, 526, 667
TspDTI	ATGAA	5 cut(s)	17, 54, 501, 614, 797
TspGWI	ACGGA	3 cut(s)	137, 141, 579
TspRI	CASTG	6 cut(s)	101, 119, 349, 460, 746, 1177
Tth111I	GACNNNGTC	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	1076
XapI	RAATTY	1 cut(s)	964
XceI	RCATGY	3 cut(s)	628, 925, 1074
XhoI	CTCGAG	1 cut(s)	1121
XmnI	GAANNNNTTC	1 cut(s)	796
XspI	CTAG	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	412
Zsp2I	ATGCAT	2 cut(s)	256, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.