Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002745.1

Orthogroup ID

OG0001750

Physical Location & Seq

Genomic Coordinates Forward (+)

12112 .. 13519

Gene Structure 1408 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002745.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

atgaagacatggaatgtcacctcatcatttgctacacaaacttggtactttttttccagtagcattgctaatctcaaatgcgatttaagtaagatttgcctatttgtggttctacagaataattctctaccattcaacaaatatgcatttttgacaacccacaatgcttttgctatcgaaggagagccatctcataccggagtccctcgtgttaccttcacgaatcaagaagacactgtcactcaacaacttaacaatggagttagagccctaatgcttgatacctatgattttcaaggagatgtctggttgtgccattccttcaaaggaaaatgccatgactacactgcatttgagccagctatagatactttgaatgaaatccaagcatttttatcagcaaacccaggagaaattgtgacattgatattagaggactatgttgaagctccaaacggattgacaaatgttttcaaagctgccggattgatgaaatactggtttccggtatcaaacatgcccaaaagtggtcaggattggccgctggtttgcgatatggtcactaagaaccaaaggctacttgtattcacttcaaaacaagagaaggaacaatccgaagggattgcataccagtggaactacatggttaaaaaccagtatggaaatgatggaatgaaagcgggaagctgttcaaacagagctgaatcgtcgcctctaaatgacaagactaaatcattggtgttggttaactattttgggtcagttcccattaagcagctctcatgtcaattcaattctgaggatttggttagcatgcttaacacttgctatggtgctgctggaaatcgatgggcaaattttgttgcggttgatttttacaagaggagtggaggagggggatcatttcaagctacagacactctcaatggagaactcatatgtggatgtaacgatgtccatgcatgtgtgccaggatcaacaacaccctgcaaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

36.84

Weight (kDa)

5.57

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001750)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13680
fragaria_vesca	FvH4_6g46490
malus_domestica	MD09G1073100.v1.1 MD17G1064700.v1.1
prunus_persica	Prupe.3G250100_v2.0.a1 Prupe.3G250100_v2.0.a1
pyrus_communis	pycom09g00050 pycom17g06470
rosa_chinensis	RchiOBHm_Chr1g0319791 RchiOBHm_Chr1g0319961 RchiOBHm_Chr1g0319971 RchiOBHm_Chr1g0320311 RchiOBHm_Chr1g0320501 RchiOBHm_Chr1g0320591 RchiOBHm_Chr1g0320801 RchiOBHm_Chr1g0320941 RchiOBHm_Chr1g0321041 RchiOBHm_Chr2g0165081 RchiOBHm_Chr2g0165141
rosa_laevigata	RLG00000021511 RLG00000030454
rosa_multiflora	Rmu_sc0001097.1_g000040 Rmu_sc0002341.1_g000013 Rmu_sc0002745.1_g000002 Rmu_sc0008502.1_g000007
rosa_roxburghii	Rroxscaffold_160G00433670 Rroxscaffold_2G00086030 Rroxscaffold_2G00086050 Rroxscaffold_4G00328110
rosa_rugosa	Rorug01G0030000 Rorug02G0512500
rosa_samantha	Rh1AG042100 Rh1CG042800 Rh1CG043400 Rh1CG043900 Rh1DG024300 Rh1DG025300 Rh1DG026300 Rh1DG048400 Rh2AG580800 Rh2BG592100 Rh2CG562600 Rh2CG562800 Rh2DG602100
rosa_wichuraiana	Rw1G003510 Rw1G003630 Rw2G048210 Rw2G048230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	542, 680, 866
AclWI	GGATC	2 cut(s)	907, 982
AcoI	YGGCCR	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	856
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	106, 527
AjnI	CCWGG	2 cut(s)	406, 970
AluBI	AGCT	7 cut(s)	362, 449, 479, 687, 701, 778, 911
AluI	AGCT	7 cut(s)	362, 449, 479, 687, 701, 778, 911
AlwI	GGATC	2 cut(s)	907, 982
AoxI	GGCC	1 cut(s)	539
ApeKI	GCWGC	3 cut(s)	479, 775, 836
ApoI	RAATTY	1 cut(s)	856
Asp700I	GAANNNNTTC	1 cut(s)	688
AsuHPI	GGTGA	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	271
BauI	CACGAG	1 cut(s)	207
BbsI	GAAGAC	2 cut(s)	11, 237
BbvI	GCAGC	3 cut(s)	466, 787, 823
BccI	CCATC	3 cut(s)	196, 662, 843
BcgI	CGANNNNNNTGC	4 cut(s)	605, 639, 941, 975
BciT130I	CCWGG	2 cut(s)	408, 972
BfmI	CTRYAG	3 cut(s)	113, 363, 912
BisI	GCNGC	4 cut(s)	480, 542, 776, 837
BlsI	GCNGC	4 cut(s)	481, 543, 777, 838
Bme1390I	CCNGG	2 cut(s)	408, 972
BmrFI	CCNGG	2 cut(s)	408, 972
BpiI	GAAGAC	2 cut(s)	11, 237
Bsa29I	ATCGAT	1 cut(s)	847
BsaJI	CCNNGG	1 cut(s)	406
BsaWI	WCCGGW	2 cut(s)	197, 505
BsaXI	ACNNNNNCTCC	2 cut(s)	402, 432
Bsc4I	CCNNNNNNNGG	2 cut(s)	106, 527
Bse1I	ACTGG	4 cut(s)	57, 503, 631, 655
Bse3DI	GCAATG	1 cut(s)	63
BseBI	CCWGG	2 cut(s)	408, 972
BseCI	ATCGAT	1 cut(s)	847
BseDI	CCNNGG	1 cut(s)	406
BseGI	GGATG	1 cut(s)	950
BseLI	CCNNNNNNNGG	2 cut(s)	106, 527
BseMI	GCAATG	1 cut(s)	63
BseMII	CTCAG	1 cut(s)	789
BseNI	ACTGG	4 cut(s)	57, 503, 631, 655
BseRI	GAGGAG	2 cut(s)	898, 906
BseXI	GCAGC	3 cut(s)	466, 787, 823
BshFI	GGCC	1 cut(s)	541
BshVI	ATCGAT	1 cut(s)	847
BsiSI	CCGG	3 cut(s)	198, 483, 506
BslFI	GGGAC	1 cut(s)	188
BslI	CCNNNNNNNGG	2 cut(s)	106, 527
BsmFI	GGGAC	1 cut(s)	188
BsnI	GGCC	1 cut(s)	541
Bsp1286I	GDGCHC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	899, 974
BspACI	CCGC	3 cut(s)	542, 680, 866
BspANI	GGCC	1 cut(s)	541
BspCNI	CTCAG	1 cut(s)	790
BspDI	ATCGAT	1 cut(s)	847
BspPI	GGATC	2 cut(s)	907, 982
BsrDI	GCAATG	1 cut(s)	63
BsrI	ACTGG	4 cut(s)	57, 503, 631, 655
BssECI	CCNNGG	1 cut(s)	406
BssMI	GATC	2 cut(s)	899, 974
BssSI	CACGAG	1 cut(s)	207
Bst2BI	CACGAG	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	408, 972
Bst4CI	ACNGT	1 cut(s)	238
BstC8I	GCNNGC	2 cut(s)	360, 815
BstDEI	CTNAG	2 cut(s)	564, 798
BstF5I	GGATG	1 cut(s)	950
BstKTI	GATC	2 cut(s)	902, 977
BstMBI	GATC	2 cut(s)	899, 974
BstNI	CCWGG	2 cut(s)	408, 972
BstNSI	RCATGY	3 cut(s)	520, 817, 966
BstSCI	CCNGG	2 cut(s)	406, 970
BstSFI	CTRYAG	3 cut(s)	113, 363, 912
BstV1I	GCAGC	3 cut(s)	466, 787, 823
BstV2I	GAAGAC	2 cut(s)	11, 237
Bsu15I	ATCGAT	1 cut(s)	847
BsuRI	GGCC	1 cut(s)	541
BsuTUI	ATCGAT	1 cut(s)	847
BtsCI	GGATG	1 cut(s)	950
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	234, 345, 638
Cac8I	GCNNGC	2 cut(s)	360, 815
ClaI	ATCGAT	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	868, 903
CviAII	CATG	8 cut(s)	9, 338, 517, 643, 783, 814, 959, 963
CviQI	GTAC	1 cut(s)	46
DdeI	CTNAG	2 cut(s)	564, 798
DpnI	GATC	2 cut(s)	901, 976
DpnII	GATC	2 cut(s)	899, 974
EaeI	YGGCCR	1 cut(s)	539
Eco24I	GRGCYC	1 cut(s)	271
EcoRII	CCWGG	2 cut(s)	406, 970
EcoT22I	ATGCAT	2 cut(s)	148, 964
EcoT38I	GRGCYC	1 cut(s)	271
FaeI	CATG	8 cut(s)	12, 341, 520, 646, 786, 817, 962, 966
FaqI	GGGAC	1 cut(s)	188
FatI	CATG	8 cut(s)	8, 337, 516, 642, 782, 813, 958, 962
FauI	CCCGC	1 cut(s)	673
FauNDI	CATATG	1 cut(s)	938
Fnu4HI	GCNGC	4 cut(s)	480, 542, 776, 837
FokI	GGATG	1 cut(s)	957
FriOI	GRGCYC	1 cut(s)	271
Fsp4HI	GCNGC	4 cut(s)	480, 542, 776, 837
GluI	GCNGC	4 cut(s)	480, 542, 776, 837
HaeIII	GGCC	1 cut(s)	541
HapII	CCGG	3 cut(s)	198, 483, 506
Hin1II	CATG	8 cut(s)	12, 341, 520, 646, 786, 817, 962, 966
HincII	GTYRAC	1 cut(s)	748
HindII	GTYRAC	1 cut(s)	748
HinfI	GANTC	3 cut(s)	201, 223, 704
HpaI	GTTAAC	1 cut(s)	748
HpaII	CCGG	3 cut(s)	198, 483, 506
HphI	GGTGA	1 cut(s)	10
Hpy166II	GTNNAC	1 cut(s)	748
Hpy188I	TCNGA	2 cut(s)	616, 799
Hpy188III	TCNNGA	3 cut(s)	220, 227, 533
Hpy8I	GTNNAC	1 cut(s)	748
Hpy99I	CGWCG	1 cut(s)	712
HpyAV	CCTTC	5 cut(s)	173, 226, 331, 598, 611
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4V	TGCA	5 cut(s)	146, 350, 626, 962, 990
HpyF3I	CTNAG	2 cut(s)	564, 798
Hsp92II	CATG	8 cut(s)	12, 341, 520, 646, 786, 817, 962, 966
KspAI	GTTAAC	1 cut(s)	748
Kzo9I	GATC	2 cut(s)	899, 974
LmnI	GCTCC	1 cut(s)	454
Lsp1109I	GCAGC	3 cut(s)	466, 787, 823
MaeIII	GTNAC	6 cut(s)	16, 211, 238, 418, 559, 947
MalI	GATC	2 cut(s)	901, 976
MboI	GATC	2 cut(s)	899, 974
MboII	GAAGA	2 cut(s)	16, 242
MhlI	GDGCHC	1 cut(s)	271
MluCI	AATT	5 cut(s)	121, 414, 788, 793, 856
MlyI	GAGTC	1 cut(s)	210
MnlI	CCTC	8 cut(s)	31, 216, 427, 723, 793, 876, 884, 887
Mph1103I	ATGCAT	2 cut(s)	148, 964
MroXI	GAANNNNTTC	1 cut(s)	688
MseI	TTAA	6 cut(s)	86, 252, 648, 747, 771, 819
MslI	CAYNNNNRTG	2 cut(s)	631, 963
MspA1I	CMGCKG	1 cut(s)	544
MspI	CCGG	3 cut(s)	198, 483, 506
MspR9I	CCNGG	2 cut(s)	408, 972
MvaI	CCWGG	2 cut(s)	408, 972
NdeI	CATATG	1 cut(s)	938
NdeII	GATC	2 cut(s)	899, 974
NlaIII	CATG	8 cut(s)	12, 341, 520, 646, 786, 817, 962, 966
NmuCI	GTSAC	4 cut(s)	16, 238, 418, 559
NsiI	ATGCAT	2 cut(s)	148, 964
NspI	RCATGY	3 cut(s)	520, 817, 966
PaeI	GCATGC	1 cut(s)	817
PdmI	GAANNNNTTC	1 cut(s)	688
PfeI	GAWTC	2 cut(s)	223, 704
PflFI	GACNNNGTC	1 cut(s)	236
PkrI	GCNGC	4 cut(s)	481, 543, 777, 838
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	406, 970
PspGI	CCWGG	2 cut(s)	406, 970
PsyI	GACNNNGTC	1 cut(s)	236
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
RseI	CAYNNNNRTG	2 cut(s)	631, 963
SaqAI	TTAA	6 cut(s)	86, 252, 648, 747, 771, 819
SatI	GCNGC	4 cut(s)	480, 542, 776, 837
Sau3AI	GATC	2 cut(s)	899, 974
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	408, 972
SduI	GDGCHC	1 cut(s)	271
SfcI	CTRYAG	3 cut(s)	113, 363, 912
SmiMI	CAYNNNNRTG	2 cut(s)	631, 963
SphI	GCATGC	1 cut(s)	817
Sse9I	AATT	5 cut(s)	121, 414, 788, 793, 856
SsiI	CCGC	3 cut(s)	542, 680, 866
StyD4I	CCNGG	2 cut(s)	406, 970
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	2 cut(s)	177, 847
TasI	AATT	5 cut(s)	121, 414, 788, 793, 856
TauI	GCSGC	1 cut(s)	544
TfiI	GAWTC	2 cut(s)	223, 704
Tru1I	TTAA	6 cut(s)	86, 252, 648, 747, 771, 819
Tru9I	TTAA	6 cut(s)	86, 252, 648, 747, 771, 819
TscAI	CASTG	3 cut(s)	241, 352, 638
TseFI	GTSAC	4 cut(s)	16, 238, 418, 559
TseI	GCWGC	3 cut(s)	479, 775, 836
Tsp45I	GTSAC	4 cut(s)	16, 238, 418, 559
TspDTI	ATGAA	4 cut(s)	17, 393, 506, 689
TspGWI	ACGGA	1 cut(s)	471
TspRI	CASTG	3 cut(s)	241, 352, 638
Tth111I	GACNNNGTC	1 cut(s)	236
XapI	RAATTY	1 cut(s)	856
XceI	RCATGY	3 cut(s)	520, 817, 966
XmnI	GAANNNNTTC	1 cut(s)	688
Zsp2I	ATGCAT	2 cut(s)	148, 964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.