Rh1CG042800

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0001750
Physical Location & Seq
Reverse (-)
8010157 .. 8018638
8482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG042800.1

Sequence Viewer

Length: 1446 bp
ATGAAGACGACTCGGCACAGCTTCCTTCTGGTTCTAGTTCTGGTTATGGCTCTTGCTGTGTTTTCATGTGTCGTCATAGCTTGCTCCGATGGACAGTGCAAGCTCTTAGATCAGTGCTCGACGGACGGAGATTGTGAGGCGGGGCTTTACTGTTTCGGTTGCCCTTCGGAGTTTTCTGGCTCCAGATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTATTACCTTCACGAATCAAGAAGATACTGTCACTCAACAACTTAACAATGGAGTTAGAGCTCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACACTGCATTTGAGCCAGCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAAATTGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGGTGCCGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCCGCTGGTTAGCGATATGGTCACTAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCCGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAATATGGAAATGATGGAATGAAAGCAGGAAGCTGTTCAAACAGAGCTGAATCGTCTCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTGGTTAGCATGCTTAACACTTGTTATGGTGCTGCTGGAAACCGATGGGCGAATTTTGTTGCGGTTGATTTTTACAAGAGGAGTGGAGGAGGGGGATCATTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGTTGTAACGATGTCCATGCATGTGTGGGGCTGCCAAGGTGTCCGTTGCCACTGGAAGTGCCTTTATGTGATGAGTGGGACAATTGGGCGTGGAATCAGCTTATGGCTGCTGGCTCTGACTTGCTTGGAAAGGTCTATAATATTCAGTTGTTATTCAATCCCAGCATACTTCTCACTTATGGTGATGATGCTGCTCCAATGCTCTACCTATCAACCGAGAGAATGAATCTTGCACGGAAGGCCTTGATCAGATCATGCAAAAGTCACCATGAGGCCATGATTTTTGACTGGGAGGCAATGAATCTAGCTAGGAAGATGAGGTCTTCAAAAGGTGGCCATGAGATCATGAATCTCGACAGGGAGGCCTTGAGATCATGCCAAGTAGCTAGGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

481

Amino Acids

53.44

Weight (kDa)

5.46

Isoelectric Point (pI)

38.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 75 - 358 5.5e-149 PI-PLC-like catalytic domain
PI-PLC_X PF26146 106 - 329 1.8e-23 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AciI CCGC 3 cut(s) 140, 650, 974
AclWI GGATC 1 cut(s) 1015
AcoI YGGCCR 2 cut(s) 647, 1384
AcsI RAATTY 1 cut(s) 964
AfiI CCNNNNNNNGG 1 cut(s) 635
AjnI CCWGG 1 cut(s) 514
Alw21I GWGCWC 2 cut(s) 119, 379
Alw26I GTCTC 1 cut(s) 822
AlwI GGATC 1 cut(s) 1015
AoxI GGCC 5 cut(s) 647, 1290, 1323, 1384, 1413
ApeKI GCWGC 5 cut(s) 883, 944, 1081, 1157, 1241
ApoI RAATTY 1 cut(s) 964
Asp700I GAANNNNTTC 1 cut(s) 796
AsuHPI GGTGA 2 cut(s) 1244, 1307
BalI TGGCCA 1 cut(s) 1386
BanI GGYRCC 1 cut(s) 587
BanII GRGCYC 1 cut(s) 379
BbsI GAAGAC 2 cut(s) 11, 1365
Bbv12I GWGCWC 2 cut(s) 119, 379
BbvI GCAGC 5 cut(s) 895, 931, 1068, 1144, 1228
BccI CCATC 4 cut(s) 83, 304, 770, 951
BcgI CGANNNNNNTGC 4 cut(s) 713, 747, 1049, 1083
BciT130I CCWGG 1 cut(s) 516
BclI TGATCA 1 cut(s) 1296
BcoDI GTCTC 1 cut(s) 822
BfaI CTAG 4 cut(s) 35, 1355, 1359, 1437
BfmI CTRYAG 2 cut(s) 471, 1020
BisI GCNGC 6 cut(s) 650, 884, 945, 1082, 1158, 1242
BlsI GCNGC 6 cut(s) 651, 885, 946, 1083, 1159, 1243
Bme1390I CCNGG 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 181, 589
BmrFI CCNGG 1 cut(s) 516
BmrI ACTGGG 1 cut(s) 1348
BmsI GCATC 1 cut(s) 1228
BmuI ACTGGG 1 cut(s) 1348
BpiI GAAGAC 2 cut(s) 11, 1365
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 1438
BsaJI CCNNGG 2 cut(s) 514, 1085
BsaWI WCCGGW 2 cut(s) 305, 613
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 635
Bse1I ACTGG 4 cut(s) 611, 739, 1107, 1343
Bse3DI GCAATG 1 cut(s) 1353
BseBI CCWGG 1 cut(s) 516
BseDI CCNNGG 2 cut(s) 514, 1085
BseLI CCNNNNNNNGG 1 cut(s) 635
BseMI GCAATG 1 cut(s) 1353
BseMII CTCAG 1 cut(s) 897
BseNI ACTGG 4 cut(s) 611, 739, 1107, 1343
BseRI GAGGAG 3 cut(s) 810, 1006, 1014
BseXI GCAGC 5 cut(s) 895, 931, 1068, 1144, 1228
BseYI CCCAGC 1 cut(s) 1211
BshFI GGCC 5 cut(s) 649, 1292, 1325, 1386, 1415
BshNI GGYRCC 1 cut(s) 587
BsiHKAI GWGCWC 2 cut(s) 119, 379
BsiSI CCGG 3 cut(s) 306, 591, 614
BslFI GGGAC 2 cut(s) 296, 1142
BslI CCNNNNNNNGG 1 cut(s) 635
BsmAI GTCTC 1 cut(s) 822
BsmBI CGTCTC 1 cut(s) 822
BsmFI GGGAC 2 cut(s) 296, 1142
BsnI GGCC 5 cut(s) 649, 1292, 1325, 1386, 1415
Bsp1286I GDGCHC 2 cut(s) 119, 379
Bsp143I GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
BspACI CCGC 3 cut(s) 140, 650, 974
BspANI GGCC 5 cut(s) 649, 1292, 1325, 1386, 1415
BspCNI CTCAG 1 cut(s) 898
BspHI TCATGA 2 cut(s) 1395, 1442
BspLI GGNNCC 2 cut(s) 181, 589
BspPI GGATC 1 cut(s) 1015
BspT107I GGYRCC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 1353
BsrI ACTGG 4 cut(s) 611, 739, 1107, 1343
BssECI CCNNGG 2 cut(s) 514, 1085
BssMI GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
BssT1I CCWWGG 1 cut(s) 1085
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 3 cut(s) 96, 152, 346
BstC8I GCNNGC 5 cut(s) 82, 101, 468, 923, 1162
BstDEI CTNAG 3 cut(s) 106, 672, 906
BstKTI GATC 7 cut(s) 112, 197, 1010, 1299, 1304, 1395, 1424
BstMAI GTCTC 1 cut(s) 822
BstMBI GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
BstMWI GCNNNNNNNGC 1 cut(s) 1289
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 3 cut(s) 628, 925, 1074
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 2 cut(s) 471, 1020
BstV1I GCAGC 5 cut(s) 895, 931, 1068, 1144, 1228
BstV2I GAAGAC 2 cut(s) 11, 1365
BsuRI GGCC 5 cut(s) 649, 1292, 1325, 1386, 1415
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 5 cut(s) 101, 119, 453, 746, 1100
Cac8I GCNNGC 5 cut(s) 82, 101, 468, 923, 1162
CciI TCATGA 2 cut(s) 1395, 1442
CspCI CAANNNNNGTGG 2 cut(s) 976, 1011
DdeI CTNAG 3 cut(s) 106, 672, 906
DpnI GATC 7 cut(s) 111, 196, 1009, 1298, 1303, 1394, 1423
DpnII GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
DraI TTTAAA 1 cut(s) 403
EaeI YGGCCR 2 cut(s) 647, 1384
Ecl136II GAGCTC 1 cut(s) 377
Eco130I CCWWGG 1 cut(s) 1085
Eco147I AGGCCT 2 cut(s) 1292, 1415
Eco24I GRGCYC 1 cut(s) 379
Eco53kI GAGCTC 1 cut(s) 377
EcoICRI GAGCTC 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 514
EcoT14I CCWWGG 1 cut(s) 1085
EcoT22I ATGCAT 2 cut(s) 256, 1072
EcoT38I GRGCYC 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 1085
Esp3I CGTCTC 1 cut(s) 822
FaqI GGGAC 2 cut(s) 296, 1142
FauI CCCGC 1 cut(s) 133
FauNDI CATATG 1 cut(s) 1046
FbaI TGATCA 1 cut(s) 1296
Fnu4HI GCNGC 6 cut(s) 650, 884, 945, 1082, 1158, 1242
FriOI GRGCYC 1 cut(s) 379
Fsp4HI GCNGC 6 cut(s) 650, 884, 945, 1082, 1158, 1242
FspBI CTAG 4 cut(s) 35, 1355, 1359, 1437
GluI GCNGC 6 cut(s) 650, 884, 945, 1082, 1158, 1242
GsaI CCCAGC 1 cut(s) 1215
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 5 cut(s) 649, 1292, 1325, 1386, 1415
HapII CCGG 3 cut(s) 306, 591, 614
HincII GTYRAC 1 cut(s) 856
HindII GTYRAC 1 cut(s) 856
HinfI GANTC 8 cut(s) 10, 309, 331, 812, 1144, 1276, 1351, 1399
HpaI GTTAAC 1 cut(s) 856
HpaII CCGG 3 cut(s) 306, 591, 614
HphI GGTGA 2 cut(s) 1244, 1307
Hpy166II GTNNAC 1 cut(s) 856
Hpy188I TCNGA 6 cut(s) 88, 169, 724, 907, 1168, 1301
Hpy188III TCNNGA 7 cut(s) 183, 328, 335, 641, 1396, 1403, 1443
Hpy8I GTNNAC 1 cut(s) 856
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 8 cut(s) 35, 174, 281, 334, 439, 706, 719, 1282
HpyCH4III ACNGT 3 cut(s) 96, 152, 346
HpyCH4V TGCA 7 cut(s) 99, 254, 458, 734, 1070, 1283, 1308
HpyF10VI GCNNNNNNNGC 1 cut(s) 1289
HpyF3I CTNAG 3 cut(s) 106, 672, 906
Ksp22I TGATCA 1 cut(s) 1296
KspAI GTTAAC 1 cut(s) 856
Kzo9I GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
LmnI GCTCC 4 cut(s) 89, 185, 562, 1249
Lsp1109I GCAGC 5 cut(s) 895, 931, 1068, 1144, 1228
LweI GCATC 1 cut(s) 1228
MaeI CTAG 4 cut(s) 35, 1355, 1359, 1437
MaeIII GTNAC 5 cut(s) 346, 526, 667, 1055, 1313
MalI GATC 7 cut(s) 111, 196, 1009, 1298, 1303, 1394, 1423
MboI GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
MboII GAAGA 4 cut(s) 16, 350, 1365, 1375
MfeI CAATTG 1 cut(s) 1132
MhlI GDGCHC 2 cut(s) 119, 379
MlsI TGGCCA 1 cut(s) 1386
MluCI AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1132
MluNI TGGCCA 1 cut(s) 1386
MlyI GAGTC 2 cut(s) 4, 318
Mox20I TGGCCA 1 cut(s) 1386
Mph1103I ATGCAT 2 cut(s) 256, 1072
MroXI GAANNNNTTC 1 cut(s) 796
MscI TGGCCA 1 cut(s) 1386
MseI TTAA 5 cut(s) 360, 402, 855, 879, 927
MslI CAYNNNNRTG 2 cut(s) 739, 1071
Msp20I TGGCCA 1 cut(s) 1386
MspA1I CMGCKG 1 cut(s) 652
MspI CCGG 3 cut(s) 306, 591, 614
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 1 cut(s) 1132
MvaI CCWGG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 1289
NdeI CATATG 1 cut(s) 1046
NdeII GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
NlaIV GGNNCC 2 cut(s) 181, 589
NmuCI GTSAC 4 cut(s) 346, 526, 667, 1313
NsiI ATGCAT 2 cut(s) 256, 1072
NspI RCATGY 3 cut(s) 628, 925, 1074
PaeI GCATGC 1 cut(s) 925
PagI TCATGA 2 cut(s) 1395, 1442
PceI AGGCCT 2 cut(s) 1292, 1415
PdmI GAANNNNTTC 1 cut(s) 796
PfeI GAWTC 6 cut(s) 331, 812, 1144, 1276, 1351, 1399
PkrI GCNGC 6 cut(s) 651, 885, 946, 1083, 1159, 1243
PleI GAGTC 2 cut(s) 4, 317
PpsI GAGTC 2 cut(s) 4, 317
Psp124BI GAGCTC 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 514
PspFI CCCAGC 1 cut(s) 1211
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 2 cut(s) 181, 589
RseI CAYNNNNRTG 2 cut(s) 739, 1071
SacI GAGCTC 1 cut(s) 379
SaqAI TTAA 5 cut(s) 360, 402, 855, 879, 927
SatI GCNGC 6 cut(s) 650, 884, 945, 1082, 1158, 1242
Sau3AI GATC 7 cut(s) 109, 194, 1007, 1296, 1301, 1392, 1421
SchI GAGTC 2 cut(s) 4, 318
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 119, 379
SfaNI GCATC 1 cut(s) 1228
SfcI CTRYAG 2 cut(s) 471, 1020
SmiMI CAYNNNNRTG 2 cut(s) 739, 1071
SmlI CTYRAG 1 cut(s) 1417
SmoI CTYRAG 1 cut(s) 1417
SphI GCATGC 1 cut(s) 925
Sse9I AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1132
SseBI AGGCCT 2 cut(s) 1292, 1415
SsiI CCGC 3 cut(s) 140, 650, 974
SspI AATATT 1 cut(s) 1192
SspMI CTAG 4 cut(s) 35, 1355, 1359, 1437
SstI GAGCTC 1 cut(s) 379
StuI AGGCCT 2 cut(s) 1292, 1415
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 1 cut(s) 1085
TaaI ACNGT 3 cut(s) 96, 152, 346
TaqI TCGA 3 cut(s) 119, 285, 1404
TasI AATT 7 cut(s) 212, 229, 522, 896, 901, 964, 1132
TauI GCSGC 1 cut(s) 652
TfiI GAWTC 6 cut(s) 331, 812, 1144, 1276, 1351, 1399
Tru1I TTAA 5 cut(s) 360, 402, 855, 879, 927
Tru9I TTAA 5 cut(s) 360, 402, 855, 879, 927
TscAI CASTG 5 cut(s) 101, 119, 460, 746, 1107
TseFI GTSAC 4 cut(s) 346, 526, 667, 1313
TseI GCWGC 5 cut(s) 883, 944, 1081, 1157, 1241
Tsp45I GTSAC 4 cut(s) 346, 526, 667, 1313
TspDTI ATGAA 8 cut(s) 17, 54, 501, 614, 797, 1289, 1364, 1412
TspGWI ACGGA 5 cut(s) 137, 141, 579, 1083, 1300
TspRI CASTG 5 cut(s) 101, 119, 460, 746, 1107
XapI RAATTY 1 cut(s) 964
XceI RCATGY 3 cut(s) 628, 925, 1074
XmnI GAANNNNTTC 1 cut(s) 796
XspI CTAG 4 cut(s) 35, 1355, 1359, 1437
Zsp2I ATGCAT 2 cut(s) 256, 1072
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.