RchiOBHm_Chr1g0320801

PI-PLC X domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001750
Physical Location & Seq
Reverse (-)
8357748 .. 8359807
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55091

Sequence Viewer

Length: 987 bp
ATGTGTGAGATCAACCACCACCAACCAATTCCAGCTTTTGGTACTGAGGTTAGACCTTCGGACAGATTATTCATTGGCTCCGGCCAATATATATGGGTTAAGAATAATTCTCTACCATTCAACAAATATGCATTTTTGACAACCCACAATGCTTTTGCTATCGAAGGAGAGCCATCTCATACCGGAGTCCCTCGTGTTACCTTCACGAATCAAGAAGATACTGTCACTCAACAACTTAACAATGGAGTTAGAGCCCTAATGCTTGATACCTATGATTTTAAAGGAGATGTCTGGTTGTGCCATTCCTTCAAAGGAAAATGCCATGACTACATTGCATTTGAGCCATCTATAGATACATTGAATGAAATCCAAGCATTTTTATCAGCAAACCCAGGAGAGATAGTGACATTGATATTAGAGGACTATGTTGAAGCTCCAAACGGATTGACAAATGTTTTCAAAGCTGCAGGATTGATGAAATACTGGTTTCCGGTATCAAACATGCCCAAAAGTGGTCAGGATTGGCTGCTGGTTAGCGATATGGTCAATAAGAACCAAAGGCTACTTGTATTCACTTCAAAACAAGAGAAGGAACAATCTGAAGGGATTGCATACCAGTGGAACTACATGGTTGAAAACCAGTCACACAATTTTCCAGATGAAAATGATGGAATGAAAGCGGGAAACTGTTCAAACAGAGCTGAATCATCGCCTCTAAATGACAAGACTAAATCATTGGTGTTGGTTAACTATTTTGGGTCAGTTCCCATTAAGCAGCTCTCATGTCAATTCAATTCTGAGGATTTAGTTAGCATGCTTAACACTTGCTATGGTGCTGCTGGAAACCGATGGGCAAATTTTGTTGCGGTTGATTTTTACAATAGGAGTGGAGGAGGGGGATCGTTTCAAGCTACAGACACTCTCAATGGAGAACTCATATGTGGATGTAACGATGTCCATGCATGTGTGGTAAGCTATGAAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

328

Amino Acids

36.64

Weight (kDa)

5.01

Isoelectric Point (pI)

37.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PI-PLC_cat PF26178 34 - 322 1.8e-141 PI-PLC-like catalytic domain
PI-PLC_X PF26146 65 - 309 7.6e-20 PI-PLC X
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 38
AciI CCGC 2 cut(s) 680, 866
AclWI GGATC 1 cut(s) 907
AcoI YGGCCR 1 cut(s) 82
AcsI RAATTY 1 cut(s) 856
AcuI CTGAAG 1 cut(s) 621
AfaI GTAC 1 cut(s) 43
AfiI CCNNNNNNNGG 2 cut(s) 38, 512
AjnI CCWGG 1 cut(s) 391
AluBI AGCT 7 cut(s) 35, 434, 464, 701, 778, 911, 975
AluI AGCT 7 cut(s) 35, 434, 464, 701, 778, 911, 975
AlwI GGATC 1 cut(s) 907
AoxI GGCC 1 cut(s) 82
ApeKI GCWGC 4 cut(s) 464, 526, 775, 836
ApoI RAATTY 1 cut(s) 856
Asp700I GAANNNNTTC 1 cut(s) 688
BaeI ACNNNNGTAYC 2 cut(s) 33, 66
BanII GRGCYC 1 cut(s) 256
BauI CACGAG 1 cut(s) 192
BbvI GCAGC 4 cut(s) 451, 513, 787, 823
BccI CCATC 4 cut(s) 181, 352, 662, 843
BcgI CGANNNNNNTGC 2 cut(s) 941, 975
BciT130I CCWGG 1 cut(s) 393
BfmI CTRYAG 3 cut(s) 348, 465, 912
BisI GCNGC 4 cut(s) 465, 527, 776, 837
BlsI GCNGC 4 cut(s) 466, 528, 777, 838
Bme1390I CCNGG 1 cut(s) 393
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 391
BsaWI WCCGGW 2 cut(s) 182, 490
BsaXI ACNNNNNCTCC 2 cut(s) 387, 417
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 512
Bse1I ACTGG 3 cut(s) 488, 616, 640
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 391
BseGI GGATG 1 cut(s) 950
BseLI CCNNNNNNNGG 2 cut(s) 38, 512
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 2 cut(s) 36, 789
BseNI ACTGG 3 cut(s) 488, 616, 640
BseRI GAGGAG 1 cut(s) 906
BseXI GCAGC 4 cut(s) 451, 513, 787, 823
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 3 cut(s) 81, 183, 491
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 2 cut(s) 38, 512
BsmFI GGGAC 1 cut(s) 173
BsnI GGCC 1 cut(s) 84
Bsp1286I GDGCHC 1 cut(s) 256
Bsp143I GATC 2 cut(s) 9, 899
BspACI CCGC 2 cut(s) 680, 866
BspANI GGCC 1 cut(s) 84
BspCNI CTCAG 2 cut(s) 37, 790
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 907
BsrDI GCAATG 1 cut(s) 330
BsrI ACTGG 3 cut(s) 488, 616, 640
BssECI CCNNGG 1 cut(s) 391
BssMI GATC 2 cut(s) 9, 899
BssSI CACGAG 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 393
Bst4CI ACNGT 2 cut(s) 223, 689
BstC8I GCNNGC 1 cut(s) 815
BstDEI CTNAG 2 cut(s) 45, 798
BstF5I GGATG 1 cut(s) 950
BstKTI GATC 2 cut(s) 12, 902
BstMBI GATC 2 cut(s) 9, 899
BstNI CCWGG 1 cut(s) 393
BstNSI RCATGY 3 cut(s) 505, 817, 966
BstSCI CCNGG 1 cut(s) 391
BstSFI CTRYAG 3 cut(s) 348, 465, 912
BstV1I GCAGC 4 cut(s) 451, 513, 787, 823
BsuRI GGCC 1 cut(s) 84
BtgZI GCGATG 1 cut(s) 693
BtsCI GGATG 1 cut(s) 950
BtsIMutI CAGTG 1 cut(s) 623
Cac8I GCNNGC 1 cut(s) 815
Csp6I GTAC 1 cut(s) 42
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviAII CATG 7 cut(s) 323, 502, 628, 783, 814, 959, 963
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 2 cut(s) 45, 798
DpnI GATC 2 cut(s) 11, 901
DpnII GATC 2 cut(s) 9, 899
DraI TTTAAA 1 cut(s) 280
EaeI YGGCCR 1 cut(s) 82
Eco24I GRGCYC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 621
EcoRII CCWGG 1 cut(s) 391
EcoT22I ATGCAT 2 cut(s) 133, 964
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 7 cut(s) 326, 505, 631, 786, 817, 962, 966
FaqI GGGAC 1 cut(s) 173
FatI CATG 7 cut(s) 322, 501, 627, 782, 813, 958, 962
FauI CCCGC 1 cut(s) 673
FauNDI CATATG 1 cut(s) 938
Fnu4HI GCNGC 4 cut(s) 465, 527, 776, 837
FokI GGATG 1 cut(s) 957
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 4 cut(s) 465, 527, 776, 837
GluI GCNGC 4 cut(s) 465, 527, 776, 837
HaeIII GGCC 1 cut(s) 84
HapII CCGG 3 cut(s) 81, 183, 491
Hin1II CATG 7 cut(s) 326, 505, 631, 786, 817, 962, 966
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 3 cut(s) 186, 208, 704
HpaI GTTAAC 1 cut(s) 748
HpaII CCGG 3 cut(s) 81, 183, 491
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 3 cut(s) 61, 601, 799
Hpy188III TCNNGA 4 cut(s) 205, 212, 518, 656
Hpy8I GTNNAC 1 cut(s) 748
HpyAV CCTTC 6 cut(s) 66, 158, 211, 316, 583, 596
HpyCH4III ACNGT 2 cut(s) 223, 689
HpyCH4V TGCA 5 cut(s) 131, 335, 467, 611, 962
HpyF3I CTNAG 2 cut(s) 45, 798
Hsp92II CATG 7 cut(s) 326, 505, 631, 786, 817, 962, 966
KspAI GTTAAC 1 cut(s) 748
Kzo9I GATC 2 cut(s) 9, 899
LmnI GCTCC 2 cut(s) 83, 439
Lsp1109I GCAGC 4 cut(s) 451, 513, 787, 823
MaeIII GTNAC 5 cut(s) 196, 223, 403, 642, 947
MalI GATC 2 cut(s) 11, 901
MboI GATC 2 cut(s) 9, 899
MboII GAAGA 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 256
MluCI AATT 6 cut(s) 27, 106, 649, 788, 793, 856
MlyI GAGTC 1 cut(s) 195
MnlI CCTC 7 cut(s) 40, 201, 412, 723, 793, 884, 887
Mph1103I ATGCAT 2 cut(s) 133, 964
MroXI GAANNNNTTC 1 cut(s) 688
MseI TTAA 6 cut(s) 99, 237, 279, 747, 771, 819
MslI CAYNNNNRTG 2 cut(s) 616, 963
MspI CCGG 3 cut(s) 81, 183, 491
MspR9I CCNGG 1 cut(s) 393
MvaI CCWGG 1 cut(s) 393
NdeI CATATG 1 cut(s) 938
NdeII GATC 2 cut(s) 9, 899
NlaIII CATG 7 cut(s) 326, 505, 631, 786, 817, 962, 966
NlaIV GGNNCC 1 cut(s) 79
NmuCI GTSAC 3 cut(s) 223, 403, 642
NsiI ATGCAT 2 cut(s) 133, 964
NspI RCATGY 3 cut(s) 505, 817, 966
PaeI GCATGC 1 cut(s) 817
PdmI GAANNNNTTC 1 cut(s) 688
PfeI GAWTC 2 cut(s) 208, 704
PflMI CCANNNNNTGG 1 cut(s) 38
PkrI GCNGC 4 cut(s) 466, 528, 777, 838
PleI GAGTC 1 cut(s) 194
PpsI GAGTC 1 cut(s) 194
Psp6I CCWGG 1 cut(s) 391
PspGI CCWGG 1 cut(s) 391
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
RseI CAYNNNNRTG 2 cut(s) 616, 963
SaqAI TTAA 6 cut(s) 99, 237, 279, 747, 771, 819
SatI GCNGC 4 cut(s) 465, 527, 776, 837
Sau3AI GATC 2 cut(s) 9, 899
SchI GAGTC 1 cut(s) 195
ScrFI CCNGG 1 cut(s) 393
SduI GDGCHC 1 cut(s) 256
SfcI CTRYAG 3 cut(s) 348, 465, 912
SmiMI CAYNNNNRTG 2 cut(s) 616, 963
SphI GCATGC 1 cut(s) 817
Sse9I AATT 6 cut(s) 27, 106, 649, 788, 793, 856
SsiI CCGC 2 cut(s) 680, 866
StyD4I CCNGG 1 cut(s) 391
TaaI ACNGT 2 cut(s) 223, 689
TaqI TCGA 1 cut(s) 162
TasI AATT 6 cut(s) 27, 106, 649, 788, 793, 856
TfiI GAWTC 2 cut(s) 208, 704
Tru1I TTAA 6 cut(s) 99, 237, 279, 747, 771, 819
Tru9I TTAA 6 cut(s) 99, 237, 279, 747, 771, 819
TscAI CASTG 1 cut(s) 623
TseFI GTSAC 3 cut(s) 223, 403, 642
TseI GCWGC 4 cut(s) 464, 526, 775, 836
Tsp45I GTSAC 3 cut(s) 223, 403, 642
TspDTI ATGAA 5 cut(s) 61, 378, 491, 675, 689
TspGWI ACGGA 1 cut(s) 456
TspRI CASTG 1 cut(s) 623
Van91I CCANNNNNTGG 1 cut(s) 38
XapI RAATTY 1 cut(s) 856
XceI RCATGY 3 cut(s) 505, 817, 966
XmnI GAANNNNTTC 1 cut(s) 688
Zsp2I ATGCAT 2 cut(s) 133, 964
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.