Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

5587722 .. 5590761

Gene Structure 3040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16340.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCGAATTCAGCGTCACTACTGTATGATCAGCTCAAGGTTGCTGAGCCGTTTTTCTTATTGGCTGGTCCAAATGTGATCGAATCCGAAGAGCATGTTCTTCGTATGGCTAAAAGCATCAAAGATATTTCGACAAAGCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGATAAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGATTCTTGAGAAGGTGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTTCATGAGTCGAGTCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAGATACCGGCGTTCTTATGTCGACAGACAGATCTTCTGGTCGCGGCAGCCCAAAGTGGGAAAATTATCAACATAAAGAAAGGACAATTTTGTGGTCACTCTGTCATGAGAAACTCGGCTGAGAAGGTTAGACTCGCAGGGAATCCAAATGTGATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTAGATCCACGAAATTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACTCATTCATTACAACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGTGGCCTTCGCGAATTAATACCATGCATAGCAAGAACCGCCGTAGCTGTTGGTGTCGATGGAATTTTCATGGAGGTGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGCCTCTGCGTCATCTAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGGAAACAACAGTTCCAAATCGATCTCACGCCTTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

291

Amino Acids

31.68

Weight (kDa)

5.92

Isoelectric Point (pI)

26.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	17 - 269	4.5e-63	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	619
AccI	GTMKAC	1 cut(s)	355
AccII	CGCG	3 cut(s)	377, 660, 818
AciI	CCGC	2 cut(s)	377, 687
AclWI	GGATC	2 cut(s)	530, 728
AcsI	RAATTY	3 cut(s)	7, 544, 711
AfiI	CCNNNNNNNGG	2 cut(s)	390, 755
AgeI	ACCGGT	1 cut(s)	748
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	211
AluBI	AGCT	6 cut(s)	34, 139, 179, 566, 695, 805
AluI	AGCT	6 cut(s)	34, 139, 179, 566, 695, 805
Alw21I	GWGCWC	1 cut(s)	807
AlwI	GGATC	2 cut(s)	530, 728
AoxI	GGCC	2 cut(s)	652, 770
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	3 cut(s)	7, 544, 711
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	665
AsiGI	ACCGGT	1 cut(s)	748
AspS9I	GGNCC	3 cut(s)	68, 209, 758
AsuHPI	GGTGA	1 cut(s)	259
AvaII	GGWCC	3 cut(s)	68, 209, 758
BaeI	ACNNNNGTAYC	2 cut(s)	329, 362
BanII	GRGCYC	2 cut(s)	231, 807
Bbv12I	GWGCWC	1 cut(s)	807
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	1 cut(s)	392
BccI	CCATC	4 cut(s)	481, 623, 701, 749
BceAI	ACGGC	2 cut(s)	34, 674
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	1 cut(s)	213
BciVI	GTATCC	1 cut(s)	509
BclI	TGATCA	1 cut(s)	28
BfaI	CTAG	3 cut(s)	645, 785, 797
BfmI	CTRYAG	1 cut(s)	612
BfuAI	ACCTGC	1 cut(s)	619
BfuI	GTATCC	1 cut(s)	509
BglII	AGATCT	1 cut(s)	364
BisI	GCNGC	2 cut(s)	378, 381
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	2 cut(s)	379, 382
Bme1390I	CCNGG	1 cut(s)	213
Bme18I	GGWCC	3 cut(s)	68, 209, 758
BmgT120I	GGNCC	3 cut(s)	68, 209, 758
BmiI	GGNNCC	1 cut(s)	505
BmrFI	CCNGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	3 cut(s)	20, 215, 260
Bsa29I	ATCGAT	1 cut(s)	852
BsaJI	CCNNGG	1 cut(s)	205
BsaWI	WCCGGW	1 cut(s)	748
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 755
Bse118I	RCCGGY	2 cut(s)	340, 748
Bse3DI	GCAATG	1 cut(s)	807
BseBI	CCWGG	1 cut(s)	213
BseCI	ATCGAT	1 cut(s)	852
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	2 cut(s)	390, 755
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	3 cut(s)	36, 213, 444
BseXI	GCAGC	1 cut(s)	392
Bsh1236I	CGCG	3 cut(s)	377, 660, 818
Bsh1285I	CGRYCG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	654, 772
BshTI	ACCGGT	1 cut(s)	748
BshVI	ATCGAT	1 cut(s)	852
BsiEI	CGRYCG	1 cut(s)	753
BsiHKAI	GWGCWC	1 cut(s)	807
BsiSI	CCGG	2 cut(s)	341, 749
BslFI	GGGAC	1 cut(s)	558
BslI	CCNNNNNNNGG	2 cut(s)	390, 755
BsmFI	GGGAC	1 cut(s)	558
BsnI	GGCC	2 cut(s)	654, 772
Bsp1286I	GDGCHC	2 cut(s)	231, 807
Bsp143I	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp68I	TCGCGA	2 cut(s)	660, 818
BspACI	CCGC	2 cut(s)	377, 687
BspANI	GGCC	2 cut(s)	654, 772
BspCNI	CTCAG	3 cut(s)	37, 214, 445
BspDI	ATCGAT	1 cut(s)	852
BspFNI	CGCG	3 cut(s)	377, 660, 818
BspHI	TCATGA	2 cut(s)	286, 438
BspLI	GGNNCC	1 cut(s)	505
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	2 cut(s)	530, 728
BspQI	GCTCTTC	2 cut(s)	84, 795
BsrDI	GCAATG	1 cut(s)	807
BsrFI	RCCGGY	2 cut(s)	340, 748
BssAI	RCCGGY	2 cut(s)	340, 748
BssECI	CCNNGG	1 cut(s)	205
BssMI	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
Bst2UI	CCWGG	1 cut(s)	213
Bst4CI	ACNGT	2 cut(s)	24, 843
Bst6I	CTCTTC	2 cut(s)	84, 795
BstC8I	GCNNGC	1 cut(s)	616
BstDEI	CTNAG	3 cut(s)	45, 222, 453
BstF5I	GGATG	1 cut(s)	561
BstFNI	CGCG	3 cut(s)	377, 660, 818
BstKTI	GATC	7 cut(s)	31, 81, 265, 367, 538, 736, 856
BstMBI	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
BstMCI	CGRYCG	1 cut(s)	753
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 145, 686, 802
BstNI	CCWGG	1 cut(s)	213
BstNSI	RCATGY	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	211
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	3 cut(s)	377, 660, 818
BstV1I	GCAGC	1 cut(s)	392
BstX2I	RGATCY	2 cut(s)	364, 535
BstXI	CCANNNNNNTGG	1 cut(s)	768
BstYI	RGATCY	2 cut(s)	364, 535
Bsu15I	ATCGAT	1 cut(s)	852
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	2 cut(s)	654, 772
BsuTUI	ATCGAT	1 cut(s)	852
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	305
BtuMI	TCGCGA	2 cut(s)	660, 818
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	1 cut(s)	616
CciI	TCATGA	2 cut(s)	286, 438
Cfr10I	RCCGGY	2 cut(s)	340, 748
Cfr13I	GGNCC	3 cut(s)	68, 209, 758
ClaI	ATCGAT	1 cut(s)	852
CseI	GACGC	2 cut(s)	3, 767
CspAI	ACCGGT	1 cut(s)	748
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	8 cut(s)	95, 217, 287, 439, 508, 672, 718, 728
DdeI	CTNAG	3 cut(s)	45, 222, 453
DpnI	GATC	7 cut(s)	30, 80, 264, 366, 537, 735, 855
DpnII	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	2 cut(s)	84, 795
EarI	CTCTTC	2 cut(s)	84, 795
Ecl136II	GAGCTC	1 cut(s)	805
Eco24I	GRGCYC	2 cut(s)	231, 807
Eco47I	GGWCC	3 cut(s)	68, 209, 758
Eco53kI	GAGCTC	1 cut(s)	805
EcoICRI	GAGCTC	1 cut(s)	805
EcoO109I	RGGNCCY	1 cut(s)	209
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	677
EcoT38I	GRGCYC	2 cut(s)	231, 807
FaeI	CATG	8 cut(s)	98, 220, 290, 442, 511, 675, 721, 731
FaqI	GGGAC	1 cut(s)	558
FatI	CATG	8 cut(s)	94, 216, 286, 438, 507, 671, 717, 727
FbaI	TGATCA	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	2 cut(s)	378, 381
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	2 cut(s)	231, 807
Fsp4HI	GCNGC	2 cut(s)	378, 381
FspBI	CTAG	3 cut(s)	645, 785, 797
GluI	GCNGC	2 cut(s)	378, 381
HaeIII	GGCC	2 cut(s)	654, 772
HapII	CCGG	2 cut(s)	341, 749
HgaI	GACGC	2 cut(s)	3, 767
Hin1II	CATG	8 cut(s)	98, 220, 290, 442, 511, 675, 721, 731
HincII	GTYRAC	1 cut(s)	356
HindII	GTYRAC	1 cut(s)	356
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	6 cut(s)	83, 235, 290, 295, 465, 475
HpaII	CCGG	2 cut(s)	341, 749
HphI	GGTGA	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	3 cut(s)	88, 206, 336
Hpy188III	TCNNGA	8 cut(s)	232, 239, 287, 439, 659, 785, 817, 869
Hpy8I	GTNNAC	1 cut(s)	356
HpyAV	CCTTC	4 cut(s)	211, 238, 451, 665
HpyCH4III	ACNGT	2 cut(s)	24, 843
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	6 cut(s)	323, 614, 675, 727, 746, 812
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 145, 686, 802
HpyF3I	CTNAG	3 cut(s)	45, 222, 453
HpySE526I	ACGT	1 cut(s)	282
Hsp92II	CATG	8 cut(s)	98, 220, 290, 442, 511, 675, 721, 731
Ksp22I	TGATCA	1 cut(s)	28
Kzo9I	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
LguI	GCTCTTC	2 cut(s)	84, 795
Lsp1109I	GCAGC	1 cut(s)	392
LweI	GCATC	1 cut(s)	126
MaeI	CTAG	3 cut(s)	645, 785, 797
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	4 cut(s)	15, 274, 428, 823
MalI	GATC	7 cut(s)	30, 80, 264, 366, 537, 735, 855
MboI	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
MboII	GAAGA	5 cut(s)	92, 101, 359, 800, 812
MflI	RGATCY	2 cut(s)	364, 535
MhlI	GDGCHC	2 cut(s)	231, 807
MluCI	AATT	7 cut(s)	7, 330, 396, 419, 544, 662, 711
MlyI	GAGTC	3 cut(s)	299, 304, 459
MmeI	TCCRAC	1 cut(s)	785
MnlI	CCTC	7 cut(s)	159, 200, 217, 494, 552, 715, 783
Mph1103I	ATGCAT	1 cut(s)	677
MseI	TTAA	3 cut(s)	527, 665, 740
MslI	CAYNNNNRTG	1 cut(s)	722
MspI	CCGG	2 cut(s)	341, 749
MspR9I	CCNGG	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	213
MvnI	CGCG	3 cut(s)	377, 660, 818
MwoI	GCNNNNNNNGC	4 cut(s)	11, 145, 686, 802
NdeII	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
NlaIII	CATG	8 cut(s)	98, 220, 290, 442, 511, 675, 721, 731
NlaIV	GGNNCC	1 cut(s)	505
NmeAIII	GCCGAG	1 cut(s)	428
NmuCI	GTSAC	3 cut(s)	15, 428, 823
NruI	TCGCGA	2 cut(s)	660, 818
NsiI	ATGCAT	1 cut(s)	677
NspI	RCATGY	1 cut(s)	98
PagI	TCATGA	2 cut(s)	286, 438
PciSI	GCTCTTC	2 cut(s)	84, 795
PcsI	WCGNNNNNNNCGW	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	83, 235, 475
PinAI	ACCGGT	1 cut(s)	748
PkrI	GCNGC	2 cut(s)	379, 382
PleI	GAGTC	3 cut(s)	298, 303, 459
PpsI	GAGTC	3 cut(s)	298, 303, 459
PpuMI	RGGWCCY	1 cut(s)	209
PshBI	ATTAAT	1 cut(s)	665
Psp124BI	GAGCTC	1 cut(s)	807
Psp5II	RGGWCCY	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	211
PspGI	CCWGG	1 cut(s)	211
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	3 cut(s)	68, 209, 758
PspPPI	RGGWCCY	1 cut(s)	209
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	2 cut(s)	364, 535
RruI	TCGCGA	2 cut(s)	660, 818
RseI	CAYNNNNRTG	1 cut(s)	722
SacI	GAGCTC	1 cut(s)	807
SalI	GTCGAC	1 cut(s)	354
SapI	GCTCTTC	2 cut(s)	84, 795
SaqAI	TTAA	3 cut(s)	527, 665, 740
SatI	GCNGC	2 cut(s)	378, 381
Sau3AI	GATC	7 cut(s)	28, 78, 262, 364, 535, 733, 853
Sau96I	GGNCC	3 cut(s)	68, 209, 758
SbfI	CCTGCAGG	1 cut(s)	616
SchI	GAGTC	3 cut(s)	299, 304, 459
ScrFI	CCNGG	1 cut(s)	213
SdaI	CCTGCAGG	1 cut(s)	616
SduI	GDGCHC	2 cut(s)	231, 807
SfaNI	GCATC	1 cut(s)	126
SfcI	CTRYAG	1 cut(s)	612
SinI	GGWCC	3 cut(s)	68, 209, 758
SmiMI	CAYNNNNRTG	1 cut(s)	722
SmlI	CTYRAG	3 cut(s)	35, 230, 239
SmoI	CTYRAG	3 cut(s)	35, 230, 239
Sse8387I	CCTGCAGG	1 cut(s)	616
Sse9I	AATT	7 cut(s)	7, 330, 396, 419, 544, 662, 711
SsiI	CCGC	2 cut(s)	377, 687
SspMI	CTAG	3 cut(s)	645, 785, 797
SstI	GAGCTC	1 cut(s)	807
StyD4I	CCNGG	1 cut(s)	211
TaaI	ACNGT	2 cut(s)	24, 843
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	8 cut(s)	81, 131, 171, 293, 355, 705, 753, 852
TasI	AATT	7 cut(s)	7, 330, 396, 419, 544, 662, 711
TauI	GCSGC	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	83, 235, 475
Tru1I	TTAA	3 cut(s)	527, 665, 740
Tru9I	TTAA	3 cut(s)	527, 665, 740
TscAI	CASTG	1 cut(s)	305
TseFI	GTSAC	3 cut(s)	15, 428, 823
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	3 cut(s)	15, 428, 823
TspDTI	ATGAA	4 cut(s)	180, 275, 588, 706
TspRI	CASTG	1 cut(s)	305
VpaK11BI	GGWCC	3 cut(s)	68, 209, 758
VspI	ATTAAT	1 cut(s)	665
XapI	RAATTY	3 cut(s)	7, 544, 711
XbaI	TCTAGA	1 cut(s)	784
XceI	RCATGY	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	355
XspI	CTAG	3 cut(s)	645, 785, 797
Zsp2I	ATGCAT	1 cut(s)	677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.