Rh4DG223600

2-dehydro-3-deoxyphosphooctonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0001283
Physical Location & Seq
Forward (+)
42684721 .. 42692739
8019 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG223600.1

Sequence Viewer

Length: 417 bp
ATGGGTAACCAAGATTTGAATTCGAACATTGGAGCTGTGGATTTGGGATTGAAGAAGAAGAATCAGGCTCGATCTCGAGTCCTTGAAGCATTAAATGCAAAGAGGGAACTGGTTGAGGGCAAGATCATAGTGAAGTCTGCGTCTTCAATCTCGCACTATGGAATTCGCATCGCGGTTGATGGATCTGTCAACTTGCAGAGTTGGATTGCCACTGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGTGCGAAGAAGTTGGCAAATTAAGTTGCAGATATCATTCAGATTCCTTCATTTTTATGCCGTCAGACTCGCTCAGCTGTATGGTAGACTTAGCAGGAAAAGATGGCATTGCGAAGCTCTTGGCATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00540 ko01100 map00540 map01100
Pfam Domains
Protein Families
DAHP_synth_1

Protein Analysis

138

Amino Acids

15.03

Weight (kDa)

9.03

Isoelectric Point (pI)

32.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 372
AccII CGCG 1 cut(s) 173
AciI CCGC 1 cut(s) 173
AclWI GGATC 2 cut(s) 190, 217
AcsI RAATTY 2 cut(s) 19, 162
AfaI GTAC 1 cut(s) 273
AfiI CCNNNNNNNGG 1 cut(s) 232
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 4 cut(s) 19, 52, 86, 147
AluBI AGCT 4 cut(s) 35, 245, 363, 403
AluI AGCT 4 cut(s) 35, 245, 363, 403
AlwI GGATC 2 cut(s) 190, 217
Ama87I CYCGRG 1 cut(s) 75
ApoI RAATTY 2 cut(s) 19, 162
AsuII TTCGAA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 75
BauI CACGAG 1 cut(s) 275
BbsI GAAGAC 1 cut(s) 135
BccI CCATC 2 cut(s) 173, 383
BceAI ACGGC 1 cut(s) 331
BfmI CTRYAG 1 cut(s) 258
BfrI CTTAAG 1 cut(s) 227
BlpI GCTNAGC 1 cut(s) 359
BmeT110I CYCGRG 1 cut(s) 75
BmrI ACTGGG 1 cut(s) 222
BmsI GCATC 1 cut(s) 177
BmuI ACTGGG 1 cut(s) 222
BpiI GAAGAC 1 cut(s) 135
Bpu1102I GCTNAGC 1 cut(s) 359
Bpu14I TTCGAA 1 cut(s) 23
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse1I ACTGG 2 cut(s) 114, 217
Bse3DI GCAATG 1 cut(s) 393
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMI GCAATG 1 cut(s) 393
BseMII CTCAG 1 cut(s) 373
BseNI ACTGG 2 cut(s) 114, 217
Bsh1236I CGCG 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 75
Bsp119I TTCGAA 1 cut(s) 23
Bsp1407I TGTACA 1 cut(s) 271
Bsp143I GATC 4 cut(s) 71, 123, 182, 222
Bsp1720I GCTNAGC 1 cut(s) 359
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 173
BspPI GGATC 2 cut(s) 190, 217
BspT104I TTCGAA 1 cut(s) 23
BspTI CTTAAG 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 393
BsrGI TGTACA 1 cut(s) 271
BsrI ACTGG 2 cut(s) 114, 217
BssMI GATC 4 cut(s) 71, 123, 182, 222
BssSI CACGAG 1 cut(s) 275
Bst2BI CACGAG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 288
BstAFI CTTAAG 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 95
BstAUI TGTACA 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 23
BstDEI CTNAG 2 cut(s) 359, 376
BstEII GGTNACC 1 cut(s) 5
BstENI CCTNNNNNAGG 1 cut(s) 230
BstFNI CGCG 1 cut(s) 173
BstKTI GATC 4 cut(s) 74, 126, 185, 225
BstMBI GATC 4 cut(s) 71, 123, 182, 222
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstPI GGTNACC 1 cut(s) 5
BstSFI CTRYAG 1 cut(s) 258
BstUI CGCG 1 cut(s) 173
BstV2I GAAGAC 1 cut(s) 135
BstX2I RGATCY 2 cut(s) 182, 222
BstYI RGATCY 2 cut(s) 182, 222
BtgZI GCGATG 1 cut(s) 154
BtsIMutI CAGTG 2 cut(s) 210, 293
CseI GACGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 272
CviJI RGCY 5 cut(s) 35, 68, 245, 363, 403
CviKI_1 RGCY 5 cut(s) 35, 68, 245, 363, 403
CviQI GTAC 1 cut(s) 272
DdeI CTNAG 2 cut(s) 359, 376
DpnI GATC 4 cut(s) 73, 125, 184, 224
DpnII GATC 4 cut(s) 71, 123, 182, 222
Eco32I GATATC 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 75
Eco91I GGTNACC 1 cut(s) 5
EcoNI CCTNNNNNAGG 1 cut(s) 230
EcoO65I GGTNACC 1 cut(s) 5
EcoRI GAATTC 2 cut(s) 19, 162
EcoRV GATATC 1 cut(s) 320
FaiI YATR 7 cut(s) 128, 159, 260, 284, 344, 368, 415
FblI GTMKAC 1 cut(s) 372
HgaI GACGC 1 cut(s) 129
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 4 cut(s) 61, 78, 329, 353
Hpy166II GTNNAC 3 cut(s) 190, 274, 373
Hpy188I TCNGA 2 cut(s) 328, 352
Hpy188III TCNNGA 1 cut(s) 75
Hpy8I GTNNAC 3 cut(s) 190, 274, 373
HpyAV CCTTC 2 cut(s) 226, 343
HpyCH4III ACNGT 1 cut(s) 288
HpyCH4V TGCA 3 cut(s) 98, 196, 315
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 2 cut(s) 359, 376
Kzo9I GATC 4 cut(s) 71, 123, 182, 222
LmnI GCTCC 1 cut(s) 32
LpnPI CCDG 4 cut(s) 50, 95, 198, 366
LweI GCATC 1 cut(s) 177
MaeIII GTNAC 2 cut(s) 5, 262
MalI GATC 4 cut(s) 73, 125, 184, 224
MboI GATC 4 cut(s) 71, 123, 182, 222
MboII GAAGA 5 cut(s) 64, 67, 70, 135, 305
MflI RGATCY 2 cut(s) 182, 222
MluCI AATT 3 cut(s) 19, 162, 305
MlyI GAGTC 2 cut(s) 87, 347
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 3 cut(s) 96, 109, 263
MseI TTAA 5 cut(s) 92, 218, 228, 237, 308
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 1 cut(s) 363
MspCI CTTAAG 1 cut(s) 227
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 1 cut(s) 95
NdeII GATC 4 cut(s) 71, 123, 182, 222
NspV TTCGAA 1 cut(s) 23
PaeR7I CTCGAG 1 cut(s) 75
PfeI GAWTC 2 cut(s) 61, 329
PleI GAGTC 2 cut(s) 86, 347
PpsI GAGTC 2 cut(s) 86, 347
PspEI GGTNACC 1 cut(s) 5
PsuI RGATCY 2 cut(s) 182, 222
PvuII CAGCTG 1 cut(s) 363
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 341
SaqAI TTAA 5 cut(s) 92, 218, 228, 237, 308
Sau3AI GATC 4 cut(s) 71, 123, 182, 222
SchI GAGTC 2 cut(s) 87, 347
SetI ASST 6 cut(s) 37, 237, 247, 255, 365, 405
SfaNI GCATC 1 cut(s) 177
SfcI CTRYAG 1 cut(s) 258
Sfr274I CTCGAG 1 cut(s) 75
SfuI TTCGAA 1 cut(s) 23
SlaI CTCGAG 1 cut(s) 75
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 75, 227
SmoI CTYRAG 2 cut(s) 75, 227
Sse9I AATT 3 cut(s) 19, 162, 305
SsiI CCGC 1 cut(s) 173
TaaI ACNGT 1 cut(s) 288
TaqI TCGA 3 cut(s) 23, 70, 76
TasI AATT 3 cut(s) 19, 162, 305
TatI WGTACW 1 cut(s) 271
TfiI GAWTC 2 cut(s) 61, 329
Tru1I TTAA 5 cut(s) 92, 218, 228, 237, 308
Tru9I TTAA 5 cut(s) 92, 218, 228, 237, 308
TscAI CASTG 2 cut(s) 217, 293
TspDTI ATGAA 1 cut(s) 325
TspRI CASTG 2 cut(s) 217, 293
Vha464I CTTAAG 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 230
XapI RAATTY 2 cut(s) 19, 162
XhoI CTCGAG 1 cut(s) 75
XmiI GTMKAC 1 cut(s) 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.