Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

42419046 .. 42424173

Gene Structure 5128 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG199500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGTTTTCCTGTGGAGGGATAAGAAGCTATCAGGAGCATTGCAGCAGCTCATCTCAAGAGAAACAAATCTGTTCCAAAGTCAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCGAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGTGCGAAGAAGTTGGCAAATTAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCTGTCAGACTCGCTCAGCTGTATGGTAGACTTAGCAGGAAAAGATGGCATTGCGAAGGTTGGGTGTCAGGAAGTGTTTATATGCAATAAAGCAAGGTTTTGTTCCAATGAGGCCATGAGAGCAGCAAAGCTTGCAAAGCTAGACTCCTTAAGTAAATTTCTGGATGTATATTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

159

Amino Acids

17.53

Weight (kDa)

8.86

Isoelectric Point (pI)

32.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	20 - 89	5.1e-14	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	330
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	458
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	133, 231
AfiI	CCNNNNNNNGG	3 cut(s)	15, 163, 190
AflII	CTTAAG	2 cut(s)	185, 451
AgsI	TTSAA	1 cut(s)	106
AjnI	CCWGG	1 cut(s)	157
AloI	GAACNNNNNNTCC	2 cut(s)	119, 151
AluBI	AGCT	7 cut(s)	27, 48, 114, 203, 321, 433, 442
AluI	AGCT	7 cut(s)	27, 48, 114, 203, 321, 433, 442
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	154, 414
ApaI	GGGCCC	1 cut(s)	158
ApeKI	GCWGC	3 cut(s)	42, 45, 425
ApoI	RAATTY	1 cut(s)	458
AspS9I	GGNCC	2 cut(s)	154, 155
AsuC2I	CCSGG	1 cut(s)	152
BaeGI	GKGCMC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	233
BbvI	GCAGC	3 cut(s)	54, 57, 437
BccI	CCATC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	152
BfaI	CTAG	2 cut(s)	443, 478
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	2 cut(s)	185, 451
BisI	GCNGC	3 cut(s)	43, 46, 426
BlpI	GCTNAGC	1 cut(s)	317
BlsI	GCNGC	3 cut(s)	44, 47, 427
Bme1390I	CCNGG	2 cut(s)	152, 159
BmgT120I	GGNCC	2 cut(s)	154, 155
BmiI	GGNNCC	2 cut(s)	155, 156
BmrFI	CCNGG	2 cut(s)	152, 159
Bpu1102I	GCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	152
BsaJI	CCNNGG	2 cut(s)	151, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 163, 190
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	2 cut(s)	37, 351
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	151, 157
BseGI	GGATG	2 cut(s)	134, 472
BseLI	CCNNNNNNNGG	3 cut(s)	15, 163, 190
BseMI	GCAATG	2 cut(s)	37, 351
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	158
BseXI	GCAGC	3 cut(s)	54, 57, 437
BshFI	GGCC	2 cut(s)	156, 416
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	3 cut(s)	15, 163, 190
BsnI	GGCC	2 cut(s)	156, 416
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	180
Bsp1720I	GCTNAGC	1 cut(s)	317
BspANI	GGCC	2 cut(s)	156, 416
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	155, 156
BspPI	GGATC	1 cut(s)	175
BspTI	CTTAAG	2 cut(s)	185, 451
BsrDI	GCAATG	2 cut(s)	37, 351
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	102
BssECI	CCNNGG	2 cut(s)	151, 157
BssMI	GATC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	131, 246
BstAFI	CTTAAG	2 cut(s)	185, 451
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	2 cut(s)	317, 334
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	134, 472
BstKTI	GATC	1 cut(s)	183
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	3 cut(s)	422, 434, 439
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	150, 157
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	158
BstV1I	GCAGC	3 cut(s)	54, 57, 437
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	2 cut(s)	156, 416
BtsCI	GGATG	2 cut(s)	134, 472
BtsIMutI	CAGTG	2 cut(s)	95, 251
Cac8I	GCNNGC	1 cut(s)	435
Cfr13I	GGNCC	2 cut(s)	154, 155
Csp6I	GTAC	2 cut(s)	132, 230
CviAII	CATG	2 cut(s)	163, 418
CviQI	GTAC	2 cut(s)	132, 230
DdeI	CTNAG	2 cut(s)	317, 334
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	158
Eco32I	GATATC	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	154, 155
EcoRII	CCWGG	1 cut(s)	157
EcoRV	GATATC	1 cut(s)	278
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	2 cut(s)	166, 421
FaiI	YATR	9 cut(s)	164, 218, 242, 302, 326, 383, 385, 419, 472
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	2 cut(s)	162, 417
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	43, 46, 426
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	3 cut(s)	43, 46, 426
FspBI	CTAG	2 cut(s)	443, 478
GluI	GCNGC	3 cut(s)	43, 46, 426
HaeIII	GGCC	2 cut(s)	156, 416
HapII	CCGG	1 cut(s)	151
Hin1II	CATG	2 cut(s)	166, 421
HindIII	AAGCTT	2 cut(s)	112, 431
HinfI	GANTC	3 cut(s)	287, 311, 446
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	2 cut(s)	232, 331
Hpy188I	TCNGA	2 cut(s)	286, 310
Hpy188III	TCNNGA	4 cut(s)	32, 56, 371, 464
Hpy8I	GTNNAC	2 cut(s)	232, 331
HpyAV	CCTTC	3 cut(s)	164, 184, 352
HpyCH4III	ACNGT	2 cut(s)	131, 246
HpyCH4V	TGCA	5 cut(s)	42, 273, 294, 387, 437
HpyF10VI	GCNNNNNNNGC	3 cut(s)	422, 434, 439
HpyF3I	CTNAG	2 cut(s)	317, 334
Hsp92II	CATG	2 cut(s)	166, 421
Kzo9I	GATC	1 cut(s)	180
LmnI	GCTCC	1 cut(s)	34
Lsp1109I	GCAGC	3 cut(s)	54, 57, 437
MaeI	CTAG	2 cut(s)	443, 478
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	2 cut(s)	263, 458
MlyI	GAGTC	2 cut(s)	305, 440
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	4 cut(s)	8, 148, 221, 406
MseI	TTAA	5 cut(s)	176, 186, 195, 266, 452
MslI	CAYNNNNRTG	1 cut(s)	299
MspA1I	CMGCKG	1 cut(s)	321
MspCI	CTTAAG	2 cut(s)	185, 451
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	152, 159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	422, 434, 439
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	2 cut(s)	166, 421
NlaIV	GGNNCC	2 cut(s)	155, 156
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	44, 47, 427
PleI	GAGTC	2 cut(s)	305, 440
PpsI	GAGTC	2 cut(s)	305, 440
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	155, 156
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	2 cut(s)	154, 155
PsuI	RGATCY	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	321
RsaI	GTAC	2 cut(s)	133, 231
RsaNI	GTAC	2 cut(s)	132, 230
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	5 cut(s)	176, 186, 195, 266, 452
SatI	GCNGC	3 cut(s)	43, 46, 426
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	2 cut(s)	154, 155
SchI	GAGTC	2 cut(s)	305, 440
ScrFI	CCNGG	2 cut(s)	152, 159
SduI	GDGCHC	1 cut(s)	158
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	3 cut(s)	54, 185, 451
SmoI	CTYRAG	3 cut(s)	54, 185, 451
Sse9I	AATT	2 cut(s)	263, 458
SspMI	CTAG	2 cut(s)	443, 478
StyD4I	CCNGG	2 cut(s)	150, 157
TaaI	ACNGT	2 cut(s)	131, 246
TasI	AATT	2 cut(s)	263, 458
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	5 cut(s)	176, 186, 195, 266, 452
Tru9I	TTAA	5 cut(s)	176, 186, 195, 266, 452
TscAI	CASTG	2 cut(s)	102, 251
TseI	GCWGC	3 cut(s)	42, 45, 425
TspRI	CASTG	2 cut(s)	102, 251
Vha464I	CTTAAG	2 cut(s)	185, 451
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	458
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	443, 478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.