Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

34962590 .. 34966616

Gene Structure 4027 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG195400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGTAGAACCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGCAAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTCGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGTTATAAAGCTAATTGTCCTGTCGTTGCTGATGTCACACATGCATTGCAACAGCCTGCTGGGAGAAAGACATTTGCCAATGCCCTTTTCTCTGTATTACTATGCGTAGTGACAACAGTTGCTGTTGGGGTGGATGCAATGGATGCAATTTTCATGGAGGTACATGATGATCCTTCTAATGAGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTTCTAGGGTAAGCAAGGGGAAGCAACGCTTTAACATTGATCTCTCACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

270

Amino Acids

29.53

Weight (kDa)

8.47

Isoelectric Point (pI)

32.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	16 - 248	1.2e-54	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccB7I	CCANNNNNTGG	1 cut(s)	701
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	3 cut(s)	62, 202, 204
AclWI	GGATC	2 cut(s)	226, 674
AcoI	YGGCCR	2 cut(s)	105, 716
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	184, 282, 672
AfiI	CCNNNNNNNGG	4 cut(s)	214, 241, 701, 733
AgsI	TTSAA	2 cut(s)	80, 157
AjnI	CCWGG	1 cut(s)	208
AjuI	GAANNNNNNNTTGG	2 cut(s)	581, 613
AluBI	AGCT	7 cut(s)	14, 31, 165, 176, 254, 521, 751
AluI	AGCT	7 cut(s)	14, 31, 165, 176, 254, 521, 751
Alw21I	GWGCWC	2 cut(s)	93, 427
AlwI	GGATC	2 cut(s)	226, 674
AlwNI	CAGNNNCTG	1 cut(s)	632
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	3 cut(s)	105, 205, 716
ApeKI	GCWGC	2 cut(s)	374, 377
ApoI	RAATTY	1 cut(s)	442
AspLEI	GCGC	1 cut(s)	726
AspS9I	GGNCC	3 cut(s)	65, 206, 704
AsuHPI	GGTGA	1 cut(s)	798
AvaII	GGWCC	2 cut(s)	65, 704
BalI	TGGCCA	1 cut(s)	107
Bbv12I	GWGCWC	2 cut(s)	93, 427
BbvI	GCAGC	2 cut(s)	386, 389
BccI	CCATC	3 cut(s)	97, 478, 695
BceAI	ACGGC	2 cut(s)	336, 703
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	2 cut(s)	368, 765
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	205, 375, 378
BlsI	GCNGC	3 cut(s)	206, 376, 379
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	65, 704
BmgT120I	GGNCC	3 cut(s)	65, 206, 704
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	210
BmsI	GCATC	2 cut(s)	634, 643
BpuEI	CTTGAG	2 cut(s)	17, 257
BsaJI	CCNNGG	3 cut(s)	84, 202, 208
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 241, 701, 733
Bse1I	ACTGG	5 cut(s)	153, 391, 468, 695, 747
Bse3DI	GCAATG	2 cut(s)	554, 654
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	84, 202, 208
BseGI	GGATG	4 cut(s)	108, 185, 649, 658
BseLI	CCNNNNNNNGG	4 cut(s)	214, 241, 701, 733
BseMI	GCAATG	2 cut(s)	554, 654
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	5 cut(s)	153, 391, 468, 695, 747
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	386, 389
BseYI	CCCAGC	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	3 cut(s)	107, 207, 718
BsiHKAI	GWGCWC	2 cut(s)	93, 427
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	214, 241, 701, 733
BsnI	GGCC	3 cut(s)	107, 207, 718
Bsp1286I	GDGCHC	2 cut(s)	93, 427
Bsp13I	TCCGGA	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	231, 361, 679, 799
BspACI	CCGC	3 cut(s)	62, 202, 204
BspANI	GGCC	3 cut(s)	107, 207, 718
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	2 cut(s)	226, 674
BsrDI	GCAATG	2 cut(s)	554, 654
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	5 cut(s)	153, 391, 468, 695, 747
BssECI	CCNNGG	3 cut(s)	84, 202, 208
BssMI	GATC	4 cut(s)	231, 361, 679, 799
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	5 cut(s)	40, 48, 182, 297, 628
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	4 cut(s)	108, 185, 649, 658
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	726
BstKTI	GATC	4 cut(s)	234, 364, 682, 802
BstMBI	GATC	4 cut(s)	231, 361, 679, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 653
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	386, 389
BstX2I	RGATCY	2 cut(s)	231, 361
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	2 cut(s)	231, 361
BsuRI	GGCC	3 cut(s)	107, 207, 718
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	108, 185, 649, 658
BtsIMutI	CAGTG	2 cut(s)	146, 302
Cac8I	GCNNGC	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	632
CfoI	GCGC	1 cut(s)	726
Cfr13I	GGNCC	3 cut(s)	65, 206, 704
Cfr42I	CCGCGG	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	183, 281, 671
CviAII	CATG	5 cut(s)	214, 436, 551, 664, 674
CviQI	GTAC	3 cut(s)	183, 281, 671
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	4 cut(s)	233, 363, 681, 801
DpnII	GATC	4 cut(s)	231, 361, 679, 799
EaeI	YGGCCR	2 cut(s)	105, 716
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	65, 704
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	556
FaeI	CATG	5 cut(s)	217, 439, 554, 667, 677
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 773, 805
FatI	CATG	5 cut(s)	213, 435, 550, 663, 673
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	205, 375, 378
FokI	GGATG	4 cut(s)	115, 172, 656, 665
Fsp4HI	GCNGC	3 cut(s)	205, 375, 378
FspBI	CTAG	2 cut(s)	368, 765
GlaI	GCGC	1 cut(s)	725
GluI	GCNGC	3 cut(s)	205, 375, 378
GsaI	CCCAGC	1 cut(s)	573
HaeIII	GGCC	3 cut(s)	107, 207, 718
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	1 cut(s)	726
Hin1II	CATG	5 cut(s)	217, 439, 554, 667, 677
Hin6I	GCGC	1 cut(s)	724
HinP1I	GCGC	1 cut(s)	724
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	5 cut(s)	5, 80, 287, 334, 457
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	798
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	4 cut(s)	69, 85, 333, 357
Hpy188III	TCNNGA	2 cut(s)	34, 100
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	5 cut(s)	215, 235, 403, 438, 693
HpyCH4III	ACNGT	5 cut(s)	40, 48, 182, 297, 628
HpyCH4V	TGCA	9 cut(s)	300, 320, 341, 374, 554, 559, 647, 656, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 653
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	5 cut(s)	217, 439, 554, 667, 677
HspAI	GCGC	1 cut(s)	724
Kpn2I	TCCGGA	1 cut(s)	99
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	4 cut(s)	231, 361, 679, 799
LmnI	GCTCC	2 cut(s)	88, 430
Lsp1109I	GCAGC	2 cut(s)	386, 389
LweI	GCATC	2 cut(s)	634, 643
MaeI	CTAG	2 cut(s)	368, 765
MaeIII	GTNAC	3 cut(s)	271, 544, 619
MalI	GATC	4 cut(s)	233, 363, 681, 801
MboI	GATC	4 cut(s)	231, 361, 679, 799
MboII	GAAGA	2 cut(s)	356, 466
MflI	RGATCY	2 cut(s)	231, 361
MhlI	GDGCHC	2 cut(s)	93, 427
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	5 cut(s)	416, 442, 523, 657, 759
MluNI	TGGCCA	1 cut(s)	107
MmeI	TCCRAC	2 cut(s)	118, 731
MnlI	CCTC	6 cut(s)	79, 199, 272, 489, 661, 727
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	556
MroI	TCCGGA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	4 cut(s)	227, 246, 405, 792
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	210, 653
NdeII	GATC	4 cut(s)	231, 361, 679, 799
NlaIII	CATG	5 cut(s)	217, 439, 554, 667, 677
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	2 cut(s)	544, 619
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	1 cut(s)	554
PfeI	GAWTC	5 cut(s)	5, 80, 287, 334, 457
PflMI	CCANNNNNTGG	1 cut(s)	701
PkrI	GCNGC	3 cut(s)	206, 376, 379
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	569
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	3 cut(s)	65, 206, 704
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	2 cut(s)	231, 361
RsaI	GTAC	3 cut(s)	184, 282, 672
RsaNI	GTAC	3 cut(s)	183, 281, 671
RseI	CAYNNNNRTG	1 cut(s)	346
SacII	CCGCGG	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	227, 246, 405, 792
SatI	GCNGC	3 cut(s)	205, 375, 378
Sau3AI	GATC	4 cut(s)	231, 361, 679, 799
Sau96I	GGNCC	3 cut(s)	65, 206, 704
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	93, 427
SfaNI	GCATC	2 cut(s)	634, 643
SfcI	CTRYAG	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	65, 704
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	32, 236
SmoI	CTYRAG	2 cut(s)	32, 236
Sse9I	AATT	5 cut(s)	416, 442, 523, 657, 759
SsiI	CCGC	3 cut(s)	62, 202, 204
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	368, 765
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	5 cut(s)	40, 48, 182, 297, 628
TaqI	TCGA	1 cut(s)	460
TasI	AATT	5 cut(s)	416, 442, 523, 657, 759
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	5 cut(s)	5, 80, 287, 334, 457
Tru1I	TTAA	4 cut(s)	227, 246, 405, 792
Tru9I	TTAA	4 cut(s)	227, 246, 405, 792
TscAI	CASTG	2 cut(s)	153, 302
TseFI	GTSAC	2 cut(s)	544, 619
TseI	GCWGC	2 cut(s)	374, 377
Tsp45I	GTSAC	2 cut(s)	544, 619
TspDTI	ATGAA	1 cut(s)	652
TspRI	CASTG	2 cut(s)	153, 302
Van91I	CCANNNNNTGG	1 cut(s)	701
VpaK11BI	GGWCC	2 cut(s)	65, 704
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	442
XceI	RCATGY	1 cut(s)	554
XspI	CTAG	2 cut(s)	368, 765
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.