Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

18158904 .. 18165198

Gene Structure 6295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGCTATCACTGTGTCAATTCAGCTCAGTGGCAGATATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAGCCGTTTTTCTTATTAGCGGGTCCAAATGTGATTGAATCCGAGGAGCACATTTTCCGAATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTCACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTAGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTCGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTGTTGCTGATGTTACACATGCATTGCAACAGCCTGCTGGGAGAAAGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGGTAGAGCTTATTGCAATTGCTAGGGTAAGCAAGGGGAAGCAACACTTCAACATTGATCTCTCACCCTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

302

Amino Acids

33.02

Weight (kDa)

6.19

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	27 - 277	1.3e-65	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	552
AccB7I	CCANNNNNTGG	1 cut(s)	788
AccII	CGCG	1 cut(s)	574
AciI	CCGC	2 cut(s)	98, 572
AclWI	GGATC	4 cut(s)	262, 563, 596, 761
AcoI	YGGCCR	2 cut(s)	141, 803
AcsI	RAATTY	2 cut(s)	478, 744
AcuI	CTGAAG	1 cut(s)	276
AfaI	GTAC	3 cut(s)	220, 318, 759
AfiI	CCNNNNNNNGG	4 cut(s)	250, 277, 788, 820
AgsI	TTSAA	3 cut(s)	116, 193, 880
AjnI	CCWGG	1 cut(s)	244
AluBI	AGCT	8 cut(s)	24, 50, 67, 201, 212, 290, 599, 838
AluI	AGCT	8 cut(s)	24, 50, 67, 201, 212, 290, 599, 838
Alw21I	GWGCWC	2 cut(s)	129, 463
AlwI	GGATC	4 cut(s)	262, 563, 596, 761
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	3 cut(s)	141, 241, 803
ApaI	GGGCCC	1 cut(s)	245
ApeKI	GCWGC	2 cut(s)	410, 413
ApoI	RAATTY	2 cut(s)	478, 744
AspLEI	GCGC	2 cut(s)	781, 813
AspS9I	GGNCC	4 cut(s)	101, 241, 242, 791
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	885
AvaII	GGWCC	2 cut(s)	101, 791
BaeGI	GKGCMC	1 cut(s)	245
BalI	TGGCCA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	680
Bbv12I	GWGCWC	2 cut(s)	129, 463
BbvI	GCAGC	2 cut(s)	422, 425
BccI	CCATC	3 cut(s)	514, 734, 782
BceAI	ACGGC	3 cut(s)	67, 372, 790
BciT130I	CCWGG	1 cut(s)	246
BcnI	CCSGG	1 cut(s)	239
BfaI	CTAG	2 cut(s)	404, 852
BfmI	CTRYAG	1 cut(s)	303
BglII	AGATCT	1 cut(s)	397
BisI	GCNGC	2 cut(s)	411, 414
BlsI	GCNGC	2 cut(s)	412, 415
Bme1390I	CCNGG	2 cut(s)	239, 246
Bme18I	GGWCC	2 cut(s)	101, 791
BmgT120I	GGNCC	4 cut(s)	101, 241, 242, 791
BmiI	GGNNCC	3 cut(s)	102, 242, 243
BmrFI	CCNGG	2 cut(s)	239, 246
BpiI	GAAGAC	1 cut(s)	680
BpuEI	CTTGAG	2 cut(s)	53, 293
BpuMI	CCSGG	1 cut(s)	239
BsaJI	CCNNGG	3 cut(s)	120, 238, 244
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 277, 788, 820
Bse1I	ACTGG	6 cut(s)	189, 427, 504, 678, 782, 834
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	1 cut(s)	246
BseDI	CCNNGG	3 cut(s)	120, 238, 244
BseGI	GGATG	3 cut(s)	221, 667, 745
BseLI	CCNNNNNNNGG	4 cut(s)	250, 277, 788, 820
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	2 cut(s)	39, 477
BseNI	ACTGG	6 cut(s)	189, 427, 504, 678, 782, 834
BseRI	GAGGAG	1 cut(s)	137
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	2 cut(s)	422, 425
BseYI	CCCAGC	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	574
BshFI	GGCC	3 cut(s)	143, 243, 805
BsiHKAI	GWGCWC	2 cut(s)	129, 463
BsiSI	CCGG	1 cut(s)	238
BslI	CCNNNNNNNGG	4 cut(s)	250, 277, 788, 820
BsnI	GGCC	3 cut(s)	143, 243, 805
Bsp120I	GGGCCC	1 cut(s)	241
Bsp1286I	GDGCHC	3 cut(s)	129, 245, 463
Bsp1407I	TGTACA	1 cut(s)	316
Bsp143I	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
BspACI	CCGC	2 cut(s)	98, 572
BspANI	GGCC	3 cut(s)	143, 243, 805
BspCNI	CTCAG	2 cut(s)	38, 478
BspFNI	CGCG	1 cut(s)	574
BspLI	GGNNCC	3 cut(s)	102, 242, 243
BspPI	GGATC	4 cut(s)	262, 563, 596, 761
BsrDI	GCAATG	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	316
BsrI	ACTGG	6 cut(s)	189, 427, 504, 678, 782, 834
BssECI	CCNNGG	3 cut(s)	120, 238, 244
BssMI	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
Bst2UI	CCWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	12, 218, 333
BstAUI	TGTACA	1 cut(s)	316
BstC8I	GCNNGC	1 cut(s)	645
BstDEI	CTNAG	2 cut(s)	25, 486
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	3 cut(s)	221, 667, 745
BstFNI	CGCG	1 cut(s)	574
BstHHI	GCGC	2 cut(s)	781, 813
BstKTI	GATC	6 cut(s)	270, 400, 571, 591, 769, 889
BstMBI	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	1 cut(s)	246
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	237, 244
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	245
BstUI	CGCG	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	422, 425
BstV2I	GAAGAC	1 cut(s)	680
BstX2I	RGATCY	2 cut(s)	267, 397
BstXI	CCANNNNNNTGG	1 cut(s)	801
BstYI	RGATCY	2 cut(s)	267, 397
BsuRI	GGCC	3 cut(s)	143, 243, 805
BtsCI	GGATG	3 cut(s)	221, 667, 745
BtsIMutI	CAGTG	5 cut(s)	8, 33, 182, 338, 685
Cac8I	GCNNGC	1 cut(s)	645
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	2 cut(s)	781, 813
Cfr13I	GGNCC	4 cut(s)	101, 241, 242, 791
Csp6I	GTAC	3 cut(s)	219, 317, 758
CviAII	CATG	6 cut(s)	250, 472, 629, 705, 751, 761
CviQI	GTAC	3 cut(s)	219, 317, 758
DdeI	CTNAG	2 cut(s)	25, 486
DpnI	GATC	6 cut(s)	269, 399, 570, 590, 768, 888
DpnII	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
EaeI	YGGCCR	2 cut(s)	141, 803
Eco24I	GRGCYC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	101, 791
Eco57I	CTGAAG	1 cut(s)	276
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	2 cut(s)	241, 242
EcoRII	CCWGG	1 cut(s)	244
EcoRV	GATATC	1 cut(s)	361
EcoT22I	ATGCAT	1 cut(s)	634
EcoT38I	GRGCYC	1 cut(s)	245
FaeI	CATG	6 cut(s)	253, 475, 632, 708, 754, 764
FalI	AAGNNNNNCTT	4 cut(s)	185, 217, 860, 892
FatI	CATG	6 cut(s)	249, 471, 628, 704, 750, 760
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	2 cut(s)	411, 414
FokI	GGATG	3 cut(s)	208, 674, 752
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	411, 414
FspBI	CTAG	2 cut(s)	404, 852
GlaI	GCGC	2 cut(s)	780, 812
GluI	GCNGC	2 cut(s)	411, 414
GsaI	CCCAGC	1 cut(s)	651
HaeIII	GGCC	3 cut(s)	143, 243, 805
HapII	CCGG	1 cut(s)	238
HhaI	GCGC	2 cut(s)	781, 813
Hin1II	CATG	6 cut(s)	253, 475, 632, 708, 754, 764
Hin6I	GCGC	2 cut(s)	779, 811
HinP1I	GCGC	2 cut(s)	779, 811
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	4 cut(s)	41, 116, 323, 370
HpaII	CCGG	1 cut(s)	238
HphI	GGTGA	1 cut(s)	885
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	5 cut(s)	121, 137, 369, 393, 593
Hpy188III	TCNNGA	3 cut(s)	70, 692, 902
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	5 cut(s)	251, 271, 439, 474, 780
HpyCH4III	ACNGT	3 cut(s)	12, 218, 333
HpyCH4V	TGCA	7 cut(s)	356, 377, 410, 632, 637, 713, 845
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	2 cut(s)	25, 486
Hsp92II	CATG	6 cut(s)	253, 475, 632, 708, 754, 764
HspAI	GCGC	2 cut(s)	779, 811
Kzo9I	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
LmnI	GCTCC	2 cut(s)	124, 466
Lsp1109I	GCAGC	2 cut(s)	422, 425
MaeI	CTAG	2 cut(s)	404, 852
MaeIII	GTNAC	2 cut(s)	307, 622
MalI	GATC	6 cut(s)	269, 399, 570, 590, 768, 888
MboI	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
MboII	GAAGA	4 cut(s)	350, 392, 502, 680
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	2 cut(s)	267, 397
MhlI	GDGCHC	3 cut(s)	129, 245, 463
MlsI	TGGCCA	1 cut(s)	143
MluCI	AATT	9 cut(s)	17, 452, 478, 561, 577, 601, 695, 744, 846
MluNI	TGGCCA	1 cut(s)	143
MmeI	TCCRAC	3 cut(s)	154, 639, 818
MnlI	CCTC	7 cut(s)	115, 235, 308, 525, 662, 748, 814
Mox20I	TGGCCA	1 cut(s)	143
Mph1103I	ATGCAT	1 cut(s)	634
MscI	TGGCCA	1 cut(s)	143
MseI	TTAA	4 cut(s)	263, 282, 441, 560
MslI	CAYNNNNRTG	1 cut(s)	382
Msp20I	TGGCCA	1 cut(s)	143
MspI	CCGG	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	239, 246
MunI	CAATTG	1 cut(s)	846
MvaI	CCWGG	1 cut(s)	246
MvnI	CGCG	1 cut(s)	574
MwoI	GCNNNNNNNGC	1 cut(s)	719
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
NlaIII	CATG	6 cut(s)	253, 475, 632, 708, 754, 764
NlaIV	GGNNCC	3 cut(s)	102, 242, 243
NmuCI	GTSAC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	1 cut(s)	632
PfeI	GAWTC	4 cut(s)	41, 116, 323, 370
PflMI	CCANNNNNTGG	1 cut(s)	788
PkrI	GCNGC	2 cut(s)	412, 415
PsiI	TTATAA	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	244
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	244
PspN4I	GGNNCC	3 cut(s)	102, 242, 243
PspOMI	GGGCCC	1 cut(s)	241
PspPI	GGNCC	4 cut(s)	101, 241, 242, 791
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	2 cut(s)	267, 397
RsaI	GTAC	3 cut(s)	220, 318, 759
RsaNI	GTAC	3 cut(s)	219, 317, 758
RseI	CAYNNNNRTG	1 cut(s)	382
SaqAI	TTAA	4 cut(s)	263, 282, 441, 560
SatI	GCNGC	2 cut(s)	411, 414
Sau3AI	GATC	6 cut(s)	267, 397, 568, 588, 766, 886
Sau96I	GGNCC	4 cut(s)	101, 241, 242, 791
ScrFI	CCNGG	2 cut(s)	239, 246
SduI	GDGCHC	3 cut(s)	129, 245, 463
SfcI	CTRYAG	1 cut(s)	303
SinI	GGWCC	2 cut(s)	101, 791
SmiMI	CAYNNNNRTG	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	68, 272
SmoI	CTYRAG	2 cut(s)	68, 272
Sse9I	AATT	9 cut(s)	17, 452, 478, 561, 577, 601, 695, 744, 846
SsiI	CCGC	2 cut(s)	98, 572
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	2 cut(s)	404, 852
StyD4I	CCNGG	2 cut(s)	237, 244
TaaI	ACNGT	3 cut(s)	12, 218, 333
TasI	AATT	9 cut(s)	17, 452, 478, 561, 577, 601, 695, 744, 846
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	4 cut(s)	41, 116, 323, 370
Tru1I	TTAA	4 cut(s)	263, 282, 441, 560
Tru9I	TTAA	4 cut(s)	263, 282, 441, 560
TscAI	CASTG	5 cut(s)	15, 33, 189, 338, 685
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	410, 413
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	739
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	5 cut(s)	15, 33, 189, 338, 685
Van91I	CCANNNNNTGG	1 cut(s)	788
VpaK11BI	GGWCC	2 cut(s)	101, 791
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	2 cut(s)	478, 744
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	2 cut(s)	404, 852
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.