Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

18284568 .. 18290107

Gene Structure 5540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG182900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAGCCGTTTTTCTTATTAGCGGGTCCAAATGTGATTGAATCCGAGGAGCACATTTTCCGAATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTCACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTAGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTCGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTGTAAGTTGTTTCTTTTCTTTTCCTTCCTGTACTTTTTGGTGGTGTTATCTGTATTTCTGTCTTAAAGTTTGCCTGTTTATATTCCATGAAAATAGAAATTACTTTATTGTGAATCATACTGGAAACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

235

Amino Acids

26.49

Weight (kDa)

8.49

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	15 - 192	1.5e-49	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccII	CGCG	1 cut(s)	538
AciI	CCGC	2 cut(s)	62, 536
AclWI	GGATC	3 cut(s)	226, 527, 560
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	442
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	184, 282, 607
AfiI	CCNNNNNNNGG	2 cut(s)	214, 241
AgsI	TTSAA	2 cut(s)	80, 157
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	6 cut(s)	14, 31, 165, 176, 254, 563
AluI	AGCT	6 cut(s)	14, 31, 165, 176, 254, 563
Alw21I	GWGCWC	2 cut(s)	93, 427
AlwI	GGATC	3 cut(s)	226, 527, 560
AoxI	GGCC	2 cut(s)	105, 205
ApaI	GGGCCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	374, 377
ApoI	RAATTY	1 cut(s)	442
AspS9I	GGNCC	3 cut(s)	65, 205, 206
AsuC2I	CCSGG	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	65
BaeGI	GKGCMC	1 cut(s)	209
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	93, 427
BbvI	GCAGC	2 cut(s)	386, 389
BccI	CCATC	1 cut(s)	478
BceAI	ACGGC	2 cut(s)	31, 336
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	1 cut(s)	368
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	2 cut(s)	375, 378
BlsI	GCNGC	2 cut(s)	376, 379
Bme1390I	CCNGG	2 cut(s)	203, 210
Bme18I	GGWCC	1 cut(s)	65
BmgT120I	GGNCC	3 cut(s)	65, 205, 206
BmiI	GGNNCC	3 cut(s)	66, 206, 207
BmrFI	CCNGG	2 cut(s)	203, 210
BpuEI	CTTGAG	2 cut(s)	17, 257
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	3 cut(s)	84, 202, 208
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 241
Bse1I	ACTGG	4 cut(s)	153, 391, 468, 700
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	84, 202, 208
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	214, 241
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	4 cut(s)	153, 391, 468, 700
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	386, 389
Bsh1236I	CGCG	1 cut(s)	538
BshFI	GGCC	2 cut(s)	107, 207
BsiHKAI	GWGCWC	2 cut(s)	93, 427
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	214, 241
BsnI	GGCC	2 cut(s)	107, 207
Bsp120I	GGGCCC	1 cut(s)	205
Bsp1286I	GDGCHC	3 cut(s)	93, 209, 427
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	4 cut(s)	231, 361, 532, 552
BspACI	CCGC	2 cut(s)	62, 536
BspANI	GGCC	2 cut(s)	107, 207
BspCNI	CTCAG	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	538
BspLI	GGNNCC	3 cut(s)	66, 206, 207
BspPI	GGATC	3 cut(s)	226, 527, 560
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	4 cut(s)	153, 391, 468, 700
BssECI	CCNNGG	3 cut(s)	84, 202, 208
BssMI	GATC	4 cut(s)	231, 361, 532, 552
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	182, 297
BstAUI	TGTACA	1 cut(s)	280
BstDEI	CTNAG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	538
BstKTI	GATC	4 cut(s)	234, 364, 535, 555
BstMBI	GATC	4 cut(s)	231, 361, 532, 552
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	2 cut(s)	201, 208
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	209
BstUI	CGCG	1 cut(s)	538
BstV1I	GCAGC	2 cut(s)	386, 389
BstX2I	RGATCY	2 cut(s)	231, 361
BstYI	RGATCY	2 cut(s)	231, 361
BsuRI	GGCC	2 cut(s)	107, 207
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	2 cut(s)	146, 302
Cfr13I	GGNCC	3 cut(s)	65, 205, 206
Csp6I	GTAC	3 cut(s)	183, 281, 606
CviAII	CATG	4 cut(s)	214, 436, 662, 705
CviQI	GTAC	3 cut(s)	183, 281, 606
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	4 cut(s)	233, 363, 534, 554
DpnII	GATC	4 cut(s)	231, 361, 532, 552
EaeI	YGGCCR	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	209
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	1 cut(s)	65
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	2 cut(s)	205, 206
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	209
FaeI	CATG	4 cut(s)	217, 439, 665, 708
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	4 cut(s)	213, 435, 661, 704
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	2 cut(s)	375, 378
FokI	GGATG	1 cut(s)	172
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	375, 378
FspBI	CTAG	1 cut(s)	368
GluI	GCNGC	2 cut(s)	375, 378
HaeIII	GGCC	2 cut(s)	107, 207
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	4 cut(s)	217, 439, 665, 708
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	5 cut(s)	5, 80, 287, 334, 688
HpaII	CCGG	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	5 cut(s)	85, 101, 333, 357, 557
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	5 cut(s)	215, 235, 403, 438, 609
HpyCH4III	ACNGT	2 cut(s)	182, 297
HpyCH4V	TGCA	3 cut(s)	320, 341, 374
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	4 cut(s)	217, 439, 665, 708
Kzo9I	GATC	4 cut(s)	231, 361, 532, 552
LmnI	GCTCC	2 cut(s)	88, 430
Lsp1109I	GCAGC	2 cut(s)	386, 389
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	4 cut(s)	233, 363, 534, 554
MboI	GATC	4 cut(s)	231, 361, 532, 552
MboII	GAAGA	3 cut(s)	314, 356, 466
MflI	RGATCY	2 cut(s)	231, 361
MhlI	GDGCHC	3 cut(s)	93, 209, 427
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	6 cut(s)	416, 442, 525, 541, 565, 673
MluNI	TGGCCA	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	79, 199, 272, 489
Mox20I	TGGCCA	1 cut(s)	107
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	5 cut(s)	227, 246, 405, 524, 639
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	2 cut(s)	203, 210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	538
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	4 cut(s)	231, 361, 532, 552
NlaIII	CATG	4 cut(s)	217, 439, 665, 708
NlaIV	GGNNCC	3 cut(s)	66, 206, 207
NmuCI	GTSAC	1 cut(s)	271
PfeI	GAWTC	5 cut(s)	5, 80, 287, 334, 688
PkrI	GCNGC	2 cut(s)	376, 379
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	66, 206, 207
PspOMI	GGGCCC	1 cut(s)	205
PspPI	GGNCC	3 cut(s)	65, 205, 206
PsuI	RGATCY	2 cut(s)	231, 361
RsaI	GTAC	3 cut(s)	184, 282, 607
RsaNI	GTAC	3 cut(s)	183, 281, 606
RseI	CAYNNNNRTG	1 cut(s)	346
SaqAI	TTAA	5 cut(s)	227, 246, 405, 524, 639
SatI	GCNGC	2 cut(s)	375, 378
Sau3AI	GATC	4 cut(s)	231, 361, 532, 552
Sau96I	GGNCC	3 cut(s)	65, 205, 206
ScrFI	CCNGG	2 cut(s)	203, 210
SduI	GDGCHC	3 cut(s)	93, 209, 427
SetI	ASST	8 cut(s)	16, 33, 167, 178, 246, 256, 264, 565
SfcI	CTRYAG	1 cut(s)	267
SinI	GGWCC	1 cut(s)	65
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	32, 236
SmoI	CTYRAG	2 cut(s)	32, 236
Sse9I	AATT	6 cut(s)	416, 442, 525, 541, 565, 673
SsiI	CCGC	2 cut(s)	62, 536
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	201, 208
TaaI	ACNGT	2 cut(s)	182, 297
TasI	AATT	6 cut(s)	416, 442, 525, 541, 565, 673
TatI	WGTACW	2 cut(s)	280, 605
TfiI	GAWTC	5 cut(s)	5, 80, 287, 334, 688
Tru1I	TTAA	5 cut(s)	227, 246, 405, 524, 639
Tru9I	TTAA	5 cut(s)	227, 246, 405, 524, 639
TscAI	CASTG	2 cut(s)	153, 302
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	2 cut(s)	374, 377
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	153, 302
VpaK11BI	GGWCC	1 cut(s)	65
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	442
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.