Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

35279268 .. 35290829

Gene Structure 11562 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGAGAAAGGACTATTTGTGCCATGCTGCAGCACCACCACCATGCACAAACGTAGCAACCCGTGCAAAAGTAAATTCACCAGCACTCAAAGCAGTGGTGTCTCCCTTCAAAAGGAAGAAAGGTTGTTGTCTCGTCTTTGCTCTACTCGATCACTCACTCAAGCTATCACTGTGTCAATTCAGCTCAGTGGCAGATATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAACCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAAACTATTGCAACAAAAGTTGGATTGCCACTAGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCAGCCCTGTCATGGCTGAAGGGTTAAAGGTGATAAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

146

Amino Acids

16.02

Weight (kDa)

9.63

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	80 - 142	1.2e-11	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	294
AciI	CCGC	2 cut(s)	257, 397
AcoI	YGGCCR	1 cut(s)	300
AcsI	RAATTY	1 cut(s)	73
AcuI	CTGAAG	1 cut(s)	435
AfaI	GTAC	1 cut(s)	379
AfiI	CCNNNNNNNGG	2 cut(s)	111, 409
AgsI	TTSAA	3 cut(s)	109, 275, 352
AhlI	ACTAGT	1 cut(s)	343
AluBI	AGCT	6 cut(s)	163, 183, 209, 226, 360, 371
AluI	AGCT	6 cut(s)	163, 183, 209, 226, 360, 371
Alw21I	GWGCWC	1 cut(s)	288
Alw26I	GTCTC	2 cut(s)	105, 134
Aor13HI	TCCGGA	1 cut(s)	294
AoxI	GGCC	1 cut(s)	300
ApeKI	GCWGC	3 cut(s)	26, 29, 399
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	260
AsuHPI	GGTGA	2 cut(s)	69, 439
AvaII	GGWCC	1 cut(s)	260
BalI	TGGCCA	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	13, 41, 411
BccI	CCATC	1 cut(s)	292
BcoDI	GTCTC	2 cut(s)	105, 134
BcuI	ACTAGT	1 cut(s)	343
BfaI	CTAG	2 cut(s)	344, 439
BfmI	CTRYAG	1 cut(s)	27
BisI	GCNGC	3 cut(s)	27, 30, 400
BlsI	GCNGC	3 cut(s)	28, 31, 401
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	143, 212
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	294
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 409
BseAI	TCCGGA	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	2 cut(s)	303, 380
BseLI	CCNNNNNNNGG	2 cut(s)	111, 409
BseMII	CTCAG	1 cut(s)	198
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	13, 41, 411
BshFI	GGCC	1 cut(s)	302
BsiHKAI	GWGCWC	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	295
BslI	CCNNNNNNNGG	2 cut(s)	111, 409
BsmAI	GTCTC	2 cut(s)	105, 134
BsnI	GGCC	1 cut(s)	302
Bsp1286I	GDGCHC	1 cut(s)	288
Bsp13I	TCCGGA	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	148
BspACI	CCGC	2 cut(s)	257, 397
BspANI	GGCC	1 cut(s)	302
BspCNI	CTCAG	1 cut(s)	197
BspEI	TCCGGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	31
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	1 cut(s)	148
Bst4CI	ACNGT	3 cut(s)	171, 243, 377
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstDEI	CTNAG	1 cut(s)	184
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	303, 380
BstKTI	GATC	1 cut(s)	151
BstMAI	GTCTC	2 cut(s)	105, 134
BstMBI	GATC	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 89
BstSFI	CTRYAG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	13, 41, 411
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	303, 380
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	3 cut(s)	99, 167, 192
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	1 cut(s)	378
CviAII	CATG	3 cut(s)	23, 42, 409
CviJI	RGCY	9 cut(s)	163, 183, 209, 226, 302, 360, 371, 402, 413
CviKI_1	RGCY	9 cut(s)	163, 183, 209, 226, 302, 360, 371, 402, 413
CviQI	GTAC	1 cut(s)	378
DdeI	CTNAG	1 cut(s)	184
DpnI	GATC	1 cut(s)	150
DpnII	GATC	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	300
Eco47I	GGWCC	1 cut(s)	260
Eco57I	CTGAAG	1 cut(s)	435
EcoNI	CCTNNNNNAGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	26, 45, 412
FaiI	YATR	6 cut(s)	24, 43, 197, 217, 311, 410
FalI	AAGNNNNNCTT	2 cut(s)	344, 376
FatI	CATG	3 cut(s)	22, 41, 408
FauI	CCCGC	1 cut(s)	250
Fnu4HI	GCNGC	3 cut(s)	27, 30, 400
FokI	GGATG	2 cut(s)	310, 367
Fsp4HI	GCNGC	3 cut(s)	27, 30, 400
FspBI	CTAG	2 cut(s)	344, 439
GluI	GCNGC	3 cut(s)	27, 30, 400
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	295
Hin1II	CATG	3 cut(s)	26, 45, 412
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	200, 275
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	2 cut(s)	69, 439
Hpy188I	TCNGA	2 cut(s)	264, 280
Hpy188III	TCNNGA	2 cut(s)	229, 295
HpyAV	CCTTC	2 cut(s)	115, 410
HpyCH4III	ACNGT	3 cut(s)	171, 243, 377
HpyCH4IV	ACGT	1 cut(s)	51
HpyCH4V	TGCA	4 cut(s)	29, 45, 65, 323
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 89
HpyF3I	CTNAG	1 cut(s)	184
HpySE526I	ACGT	1 cut(s)	51
Hsp92II	CATG	3 cut(s)	26, 45, 412
Kpn2I	TCCGGA	1 cut(s)	294
Kzo9I	GATC	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	3 cut(s)	93, 308, 417
Lsp1109I	GCAGC	3 cut(s)	13, 41, 411
MaeI	CTAG	2 cut(s)	344, 439
MaeII	ACGT	1 cut(s)	51
MalI	GATC	1 cut(s)	150
MboI	GATC	1 cut(s)	148
MboII	GAAGA	1 cut(s)	127
MhlI	GDGCHC	1 cut(s)	288
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	2 cut(s)	73, 176
MluNI	TGGCCA	1 cut(s)	302
MmeI	TCCRAC	1 cut(s)	313
MnlI	CCTC	2 cut(s)	274, 394
Mox20I	TGGCCA	1 cut(s)	302
MroI	TCCGGA	1 cut(s)	294
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	1 cut(s)	422
MslI	CAYNNNNRTG	1 cut(s)	40
Msp20I	TGGCCA	1 cut(s)	302
MspI	CCGG	1 cut(s)	295
MwoI	GCNNNNNNNGC	2 cut(s)	62, 89
NdeII	GATC	1 cut(s)	148
NlaIII	CATG	3 cut(s)	26, 45, 412
NlaIV	GGNNCC	1 cut(s)	261
PfeI	GAWTC	2 cut(s)	200, 275
PkrI	GCNGC	3 cut(s)	28, 31, 401
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	31
RsaI	GTAC	1 cut(s)	379
RsaNI	GTAC	1 cut(s)	378
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	422
SatI	GCNGC	3 cut(s)	27, 30, 400
Sau3AI	GATC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	260
SduI	GDGCHC	1 cut(s)	288
SetI	ASST	9 cut(s)	54, 124, 165, 185, 211, 228, 362, 373, 429
SfcI	CTRYAG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	158, 227
SmoI	CTYRAG	2 cut(s)	158, 227
SpeI	ACTAGT	1 cut(s)	343
Sse9I	AATT	2 cut(s)	73, 176
SsiI	CCGC	2 cut(s)	257, 397
SspMI	CTAG	2 cut(s)	344, 439
TaaI	ACNGT	3 cut(s)	171, 243, 377
TaiI	ACGT	1 cut(s)	54
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	73, 176
TfiI	GAWTC	2 cut(s)	200, 275
Tru1I	TTAA	1 cut(s)	422
Tru9I	TTAA	1 cut(s)	422
TscAI	CASTG	3 cut(s)	99, 174, 192
TseI	GCWGC	3 cut(s)	26, 29, 399
TspRI	CASTG	3 cut(s)	99, 174, 192
VpaK11BI	GGWCC	1 cut(s)	260
XagI	CCTNNNNNAGG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	73
XspI	CTAG	2 cut(s)	344, 439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.