Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

37208887 .. 37217289

Gene Structure 8403 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG292100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGACGTTGCTAACTCTAACATACTCTCAGTCCCATAGGCTTACCATCAACAAGTATTCTGCTTTTGAAACCGCTGGGAAGCTTCCATGGTGGCTGATATTTTCCTGTGGAGGGATAAGAAGCTATCAGGAGGTTGATAATTGCACAAGGTTTAGTTTTGTTAGTTTAGCAAGATTGATACCTGCATATACTGAAAGTATCAGCAATTCAGCATTGCAAAAGAGAAACAAATCCCCTCCAAAGTCAACGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAACGCCCCACCTCATGGGGCAGTTTATGACGGTCGTGCTTACGTGAACAGCGCCCAATCATTGTCTGAAAAAATTGGTGCAGAATTTCTTCAAATATTTCCCCGAAACAGCTTTAACAGAAGACTATCAAACCAAAATACCCATGGATATCTACAAGGAAACAGTGCAGGAGTTCGATCTTGGTCTCTAGAGTTGCCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

173

Amino Acids

19.43

Weight (kDa)

9.61

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	190
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccIII	TCCGGA	1 cut(s)	285
AciI	CCGC	1 cut(s)	72
AcoI	YGGCCR	1 cut(s)	291
AcsI	RAATTY	1 cut(s)	401
AfiI	CCNNNNNNNGG	2 cut(s)	111, 332
AgsI	TTSAA	3 cut(s)	68, 266, 410
AluBI	AGCT	3 cut(s)	82, 123, 429
AluI	AGCT	3 cut(s)	82, 123, 429
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	1 cut(s)	507
Ama87I	CYCGRG	1 cut(s)	515
Aor13HI	TCCGGA	1 cut(s)	285
AoxI	GGCC	1 cut(s)	291
ApoI	RAATTY	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	405
AspLEI	GCGC	1 cut(s)	371
AspS9I	GGNCC	1 cut(s)	251
AvaI	CYCGRG	1 cut(s)	515
AvaII	GGWCC	1 cut(s)	251
BalI	TGGCCA	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	279
BccI	CCATC	2 cut(s)	53, 283
BcoDI	GTCTC	1 cut(s)	507
BfaI	CTAG	1 cut(s)	506
BfoI	RGCGCY	1 cut(s)	372
BfuAI	ACCTGC	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	515
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	252
BpiI	GAAGAC	1 cut(s)	445
BsaAI	YACGTR	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	3 cut(s)	86, 270, 460
BsaWI	WCCGGW	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	2 cut(s)	111, 332
Bse3DI	GCAATG	1 cut(s)	212
BseAI	TCCGGA	1 cut(s)	285
BseDI	CCNNGG	3 cut(s)	86, 270, 460
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	2 cut(s)	111, 332
BseMI	GCAATG	1 cut(s)	212
BseMII	CTCAG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	287
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	2 cut(s)	417, 504
Bsh1285I	CGRYCG	1 cut(s)	352
BshFI	GGCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	352
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	111, 332
BsmAI	GTCTC	1 cut(s)	507
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	293
Bso31I	GGTCTC	1 cut(s)	507
BsoBI	CYCGRG	1 cut(s)	515
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp13I	TCCGGA	1 cut(s)	285
Bsp143I	GATC	1 cut(s)	494
Bsp19I	CCATGG	2 cut(s)	86, 460
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	1 cut(s)	40
BspEI	TCCGGA	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	252
BspMI	ACCTGC	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	507
BsrDI	GCAATG	1 cut(s)	212
BssECI	CCNNGG	3 cut(s)	86, 270, 460
BssMI	GATC	1 cut(s)	494
BssT1I	CCWWGG	2 cut(s)	86, 460
Bst4CI	ACNGT	2 cut(s)	350, 482
BstBAI	YACGTR	1 cut(s)	361
BstDEI	CTNAG	1 cut(s)	27
BstDSI	CCRYGG	2 cut(s)	86, 460
BstF5I	GGATG	1 cut(s)	294
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	1 cut(s)	371
BstKTI	GATC	1 cut(s)	497
BstMAI	GTCTC	1 cut(s)	507
BstMBI	GATC	1 cut(s)	494
BstMCI	CGRYCG	1 cut(s)	352
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstV2I	GAAGAC	1 cut(s)	445
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	2 cut(s)	86, 460
BtsCI	GGATG	1 cut(s)	294
BtsIMutI	CAGTG	1 cut(s)	487
BveI	ACCTGC	1 cut(s)	190
CfoI	GCGC	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	251
CviAII	CATG	3 cut(s)	87, 332, 461
CviJI	RGCY	6 cut(s)	40, 82, 94, 123, 293, 429
CviKI_1	RGCY	6 cut(s)	40, 82, 94, 123, 293, 429
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	1 cut(s)	496
DpnII	GATC	1 cut(s)	494
EaeI	YGGCCR	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	86, 460
Eco31I	GGTCTC	1 cut(s)	507
Eco32I	GATATC	1 cut(s)	467
Eco47I	GGWCC	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	515
EcoRV	GATATC	1 cut(s)	467
EcoT14I	CCWWGG	2 cut(s)	86, 460
ErhI	CCWWGG	2 cut(s)	86, 460
FaeI	CATG	3 cut(s)	90, 335, 464
FaiI	YATR	9 cut(s)	22, 36, 88, 187, 189, 302, 333, 345, 462
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	3 cut(s)	86, 331, 460
FokI	GGATG	1 cut(s)	301
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	370
GsaI	CCCAGC	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	286
HhaI	GCGC	1 cut(s)	371
Hin1II	CATG	3 cut(s)	90, 335, 464
Hin6I	GCGC	1 cut(s)	369
HinP1I	GCGC	1 cut(s)	369
HincII	GTYRAC	1 cut(s)	246
HindII	GTYRAC	1 cut(s)	246
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	1 cut(s)	266
HpaII	CCGG	1 cut(s)	286
Hpy166II	GTNNAC	2 cut(s)	246, 364
Hpy188I	TCNGA	3 cut(s)	255, 271, 385
Hpy188III	TCNNGA	3 cut(s)	128, 286, 506
Hpy8I	GTNNAC	2 cut(s)	246, 364
HpyCH4III	ACNGT	2 cut(s)	350, 482
HpyCH4IV	ACGT	2 cut(s)	5, 360
HpyCH4V	TGCA	5 cut(s)	144, 185, 217, 398, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	2 cut(s)	5, 360
Hsp92II	CATG	3 cut(s)	90, 335, 464
HspAI	GCGC	1 cut(s)	369
Kpn2I	TCCGGA	1 cut(s)	285
Kzo9I	GATC	1 cut(s)	494
LmnI	GCTCC	1 cut(s)	274
LpnPI	CCDG	6 cut(s)	60, 113, 118, 195, 299, 471
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	2 cut(s)	5, 360
MalI	GATC	1 cut(s)	496
MboI	GATC	1 cut(s)	494
MboII	GAAGA	2 cut(s)	398, 450
MhlI	GDGCHC	1 cut(s)	279
MlsI	TGGCCA	1 cut(s)	293
MluCI	AATT	4 cut(s)	139, 205, 390, 401
MluNI	TGGCCA	1 cut(s)	293
MnlI	CCTC	5 cut(s)	104, 124, 246, 265, 339
Mox20I	TGGCCA	1 cut(s)	293
MroI	TCCGGA	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	405
MscI	TGGCCA	1 cut(s)	293
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	320
NcoI	CCATGG	2 cut(s)	86, 460
NdeII	GATC	1 cut(s)	494
NlaIII	CATG	3 cut(s)	90, 335, 464
NlaIV	GGNNCC	1 cut(s)	252
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	266
PflMI	CCANNNNNTGG	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	361
PspFI	CCCAGC	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	432
Sau3AI	GATC	1 cut(s)	494
Sau96I	GGNCC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	279
SetI	ASST	9 cut(s)	8, 84, 125, 135, 152, 184, 331, 363, 431
SinI	GGWCC	1 cut(s)	251
Sse9I	AATT	4 cut(s)	139, 205, 390, 401
SsiI	CCGC	1 cut(s)	72
SspI	AATATT	1 cut(s)	414
SspMI	CTAG	1 cut(s)	506
StyI	CCWWGG	2 cut(s)	86, 460
TaaI	ACNGT	2 cut(s)	350, 482
TaiI	ACGT	2 cut(s)	8, 363
TaqI	TCGA	1 cut(s)	493
TasI	AATT	4 cut(s)	139, 205, 390, 401
TfiI	GAWTC	1 cut(s)	266
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	1 cut(s)	487
TspRI	CASTG	1 cut(s)	487
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	1 cut(s)	401
XbaI	TCTAGA	1 cut(s)	505
XcmI	CCANNNNNNNNNTGG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.