Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000027.1

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

1269 .. 6904

Gene Structure 5636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000027.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

atggccaagcacataaagactattgcgacaaaagttggattgccactggtgttcaagtcaagctttgacaaagctaaccgtacatcctcaaaatcattccggggccctggcatggctgaagggttaaagatccttgagaaggttaaaatagcttatgacctccctatagttacagatgtacacgaatctatacagtgcgaagaagttggcaaagttgcagatatcattcagattcctgcatttttatgccgtcagacagatcttctagttgcagcagccaagactggaaagattgtcaatattaagaagggtcaattctgtgctccttctgtcatggtaaattctgctgagaagattagactggcaggaaatccaaatgtgatggtttgtgagaggggaactatgttcggttataatgatttaattgttgatccgcgtaatttggagtggatcagagaagctaattgtcccattgttgctgatgttacacatgcattgcaacagcctgctgggagaaagttggatgatggaggtgttgccagtggtggtcttcgtgaattgataccatgtattgcaaggacagcagttgctgttggggtggatggaattttcatggaggtacatgatgatccttctaatgcgccagttgatggtccaacccaatggccgttgcgccatttggaggaactactggtagagcttattgcaattgctagggtaagcaaggggaagcaacgcttcaacattgatctctcaccctatcgagaagtacatcttgaaagatgcataaaagatttgaaggatagatttgcaagggtaggcttggaagtgtctaagccttttgtgtcttttaaagagaccattttgggagatgaatccacacttgagaacttaaaatcctttcttgccagttcagaatatgttgagaaagtgacacaaaatggaaggtgtgttgttcgggtgaaggtcctgaagctcccaccttctctaaccaaggtgattgatgacagttctgatattctagcagatatccttggaggcaaggctgcccagacgggagagaccaataaaagtttgaacacacaggttgcaagcgctgtagaggatgcgaatccaaattccaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

375

Amino Acids

40.84

Weight (kDa)

7.56

Isoelectric Point (pI)

20.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AccB7I	CCANNNNNTGG	1 cut(s)	650
AccII	CGCG	1 cut(s)	436
AciI	CCGC	1 cut(s)	434
AclWI	GGATC	4 cut(s)	124, 425, 458, 623
AcoI	YGGCCR	2 cut(s)	3, 665
AcsI	RAATTY	3 cut(s)	340, 606, 1117
AcuI	CTGAAG	2 cut(s)	138, 992
AfaI	GTAC	4 cut(s)	82, 180, 621, 771
AfeI	AGCGCT	1 cut(s)	1096
AfiI	CCNNNNNNNGG	4 cut(s)	112, 139, 650, 682
AgsI	TTSAA	5 cut(s)	55, 742, 779, 799, 1078
AjnI	CCWGG	1 cut(s)	106
AloI	GAACNNNNNNTCC	2 cut(s)	881, 913
AluBI	AGCT	6 cut(s)	63, 74, 152, 461, 700, 976
AluI	AGCT	6 cut(s)	63, 74, 152, 461, 700, 976
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	2 cut(s)	851, 1055
AlwI	GGATC	4 cut(s)	124, 425, 458, 623
AlwNI	CAGNNNCTG	1 cut(s)	590
Aor51HI	AGCGCT	1 cut(s)	1096
AoxI	GGCC	3 cut(s)	3, 103, 665
ApaI	GGGCCC	1 cut(s)	107
ApeKI	GCWGC	3 cut(s)	272, 275, 1046
ApoI	RAATTY	3 cut(s)	340, 606, 1117
AspLEI	GCGC	3 cut(s)	643, 675, 1097
AspS9I	GGNCC	4 cut(s)	103, 104, 653, 967
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	747, 973, 1009
AvaII	GGWCC	2 cut(s)	653, 967
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	284, 287, 1033
BccI	CCATC	4 cut(s)	376, 521, 596, 644
BceAI	ACGGC	2 cut(s)	234, 652
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	101
BcoDI	GTCTC	2 cut(s)	851, 1055
BfaI	CTAG	3 cut(s)	266, 714, 1022
BfmI	CTRYAG	2 cut(s)	165, 1098
BfoI	RGCGCY	1 cut(s)	1098
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	3 cut(s)	273, 276, 1047
BlsI	GCNGC	3 cut(s)	274, 277, 1048
Bme1390I	CCNGG	2 cut(s)	101, 108
Bme18I	GGWCC	2 cut(s)	653, 967
BmgT120I	GGNCC	4 cut(s)	103, 104, 653, 967
BmiI	GGNNCC	2 cut(s)	104, 105
BmrFI	CCNGG	2 cut(s)	101, 108
BmsI	GCATC	2 cut(s)	773, 1096
BpiI	GAAGAC	1 cut(s)	542
BpuEI	CTTGAG	2 cut(s)	155, 905
BpuMI	CCSGG	1 cut(s)	101
BsaBI	GATNNNNATC	1 cut(s)	1110
BsaI	GGTCTC	2 cut(s)	851, 1055
BsaJI	CCNNGG	4 cut(s)	100, 106, 993, 1033
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 139, 650, 682
Bse1I	ACTGG	7 cut(s)	51, 289, 366, 540, 644, 696, 909
Bse3DI	GCAATG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	1110
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	4 cut(s)	100, 106, 993, 1033
BseGI	GGATG	4 cut(s)	83, 529, 607, 1111
BseJI	GATNNNNATC	1 cut(s)	1110
BseLI	CCNNNNNNNGG	4 cut(s)	112, 139, 650, 682
BseMI	GCAATG	1 cut(s)	494
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	7 cut(s)	51, 289, 366, 540, 644, 696, 909
BseSI	GKGCMC	1 cut(s)	107
BseXI	GCAGC	3 cut(s)	284, 287, 1033
BseYI	CCCAGC	1 cut(s)	509
Bsh1236I	CGCG	1 cut(s)	436
BshFI	GGCC	3 cut(s)	5, 105, 667
BsiHKAI	GWGCWC	1 cut(s)	325
BsiSI	CCGG	1 cut(s)	100
BslFI	GGGAC	1 cut(s)	453
BslI	CCNNNNNNNGG	4 cut(s)	112, 139, 650, 682
BsmAI	GTCTC	2 cut(s)	851, 1055
BsmFI	GGGAC	1 cut(s)	453
BsnI	GGCC	3 cut(s)	5, 105, 667
Bso31I	GGTCTC	2 cut(s)	851, 1055
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	107, 325
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
BspACI	CCGC	1 cut(s)	434
BspANI	GGCC	3 cut(s)	5, 105, 667
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	104, 105
BspPI	GGATC	4 cut(s)	124, 425, 458, 623
BspTNI	GGTCTC	2 cut(s)	851, 1055
BsrDI	GCAATG	1 cut(s)	494
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	7 cut(s)	51, 289, 366, 540, 644, 696, 909
BssECI	CCNNGG	4 cut(s)	100, 106, 993, 1033
BssMI	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
BssT1I	CCWWGG	2 cut(s)	993, 1033
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	3 cut(s)	80, 195, 1010
BstAUI	TGTACA	1 cut(s)	178
BstC8I	GCNNGC	2 cut(s)	507, 1093
BstDEI	CTNAG	2 cut(s)	348, 834
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	4 cut(s)	83, 529, 607, 1111
BstFNI	CGCG	1 cut(s)	436
BstH2I	RGCGCY	1 cut(s)	1098
BstHHI	GCGC	3 cut(s)	643, 675, 1097
BstKTI	GATC	6 cut(s)	132, 262, 433, 453, 631, 751
BstMAI	GTCTC	2 cut(s)	851, 1055
BstMBI	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	2 cut(s)	99, 106
BstSFI	CTRYAG	2 cut(s)	165, 1098
BstSLI	GKGCMC	1 cut(s)	107
BstUI	CGCG	1 cut(s)	436
BstV1I	GCAGC	3 cut(s)	284, 287, 1033
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	2 cut(s)	129, 259
BstXI	CCANNNNNNTGG	1 cut(s)	663
BstYI	RGATCY	2 cut(s)	129, 259
BsuRI	GGCC	3 cut(s)	5, 105, 667
BtsCI	GGATG	4 cut(s)	83, 529, 607, 1111
BtsIMutI	CAGTG	3 cut(s)	44, 200, 547
Cac8I	GCNNGC	2 cut(s)	507, 1093
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	3 cut(s)	643, 675, 1097
Cfr13I	GGNCC	4 cut(s)	103, 104, 653, 967
Csp6I	GTAC	4 cut(s)	81, 179, 620, 770
CviAII	CATG	6 cut(s)	112, 334, 491, 567, 613, 623
CviQI	GTAC	4 cut(s)	81, 179, 620, 770
DdeI	CTNAG	2 cut(s)	348, 834
DpnI	GATC	6 cut(s)	131, 261, 432, 452, 630, 750
DpnII	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
DraI	TTTAAA	1 cut(s)	853
EaeI	YGGCCR	2 cut(s)	3, 665
Eco130I	CCWWGG	2 cut(s)	993, 1033
Eco24I	GRGCYC	1 cut(s)	107
Eco31I	GGTCTC	2 cut(s)	851, 1055
Eco32I	GATATC	2 cut(s)	223, 1030
Eco47I	GGWCC	2 cut(s)	653, 967
Eco47III	AGCGCT	1 cut(s)	1096
Eco57I	CTGAAG	2 cut(s)	138, 992
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoO109I	RGGNCCY	3 cut(s)	103, 104, 967
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	2 cut(s)	223, 1030
EcoT14I	CCWWGG	2 cut(s)	993, 1033
EcoT22I	ATGCAT	2 cut(s)	496, 788
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	2 cut(s)	993, 1033
FaeI	CATG	6 cut(s)	115, 337, 494, 570, 616, 626
FalI	AAGNNNNNCTT	6 cut(s)	47, 79, 722, 754, 759, 791
FaqI	GGGAC	1 cut(s)	453
FatI	CATG	6 cut(s)	111, 333, 490, 566, 612, 622
Fnu4HI	GCNGC	3 cut(s)	273, 276, 1047
FokI	GGATG	4 cut(s)	70, 536, 614, 1118
FriOI	GRGCYC	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	273, 276, 1047
FspBI	CTAG	3 cut(s)	266, 714, 1022
GlaI	GCGC	3 cut(s)	642, 674, 1096
GluI	GCNGC	3 cut(s)	273, 276, 1047
GsaI	CCCAGC	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	1098
HaeIII	GGCC	3 cut(s)	5, 105, 667
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	3 cut(s)	643, 675, 1097
Hin1II	CATG	6 cut(s)	115, 337, 494, 570, 616, 626
Hin6I	GCGC	3 cut(s)	641, 673, 1095
HinP1I	GCGC	3 cut(s)	641, 673, 1095
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	4 cut(s)	185, 232, 875, 1111
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	3 cut(s)	747, 973, 1009
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	5 cut(s)	231, 255, 455, 916, 1015
Hpy188III	TCNNGA	4 cut(s)	554, 764, 776, 970
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	9 cut(s)	113, 133, 301, 336, 642, 793, 939, 958, 993
HpyCH4III	ACNGT	3 cut(s)	80, 195, 1010
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	2 cut(s)	348, 834
Hsp92II	CATG	6 cut(s)	115, 337, 494, 570, 616, 626
HspAI	GCGC	3 cut(s)	641, 673, 1095
Kzo9I	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
LmnI	GCTCC	2 cut(s)	328, 981
Lsp1109I	GCAGC	3 cut(s)	284, 287, 1033
LweI	GCATC	2 cut(s)	773, 1096
MaeI	CTAG	3 cut(s)	266, 714, 1022
MaeIII	GTNAC	3 cut(s)	169, 484, 931
MalI	GATC	6 cut(s)	131, 261, 432, 452, 630, 750
MboI	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
MboII	GAAGA	4 cut(s)	212, 254, 364, 542
MfeI	CAATTG	2 cut(s)	708, 1123
MflI	RGATCY	2 cut(s)	129, 259
MhlI	GDGCHC	2 cut(s)	107, 325
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	3 cut(s)	16, 501, 680
MnlI	CCTC	8 cut(s)	97, 170, 387, 524, 610, 676, 1031, 1096
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	2 cut(s)	496, 788
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	6 cut(s)	125, 144, 303, 422, 852, 893
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	2 cut(s)	101, 108
MunI	CAATTG	2 cut(s)	708, 1123
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	436
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	1 cut(s)	101
NdeII	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
NlaIII	CATG	6 cut(s)	115, 337, 494, 570, 616, 626
NlaIV	GGNNCC	2 cut(s)	104, 105
NmuCI	GTSAC	1 cut(s)	931
NsiI	ATGCAT	2 cut(s)	496, 788
NspI	RCATGY	1 cut(s)	494
PfeI	GAWTC	4 cut(s)	185, 232, 875, 1111
PflMI	CCANNNNNTGG	1 cut(s)	650
PkrI	GCNGC	3 cut(s)	274, 277, 1048
PpuMI	RGGWCCY	1 cut(s)	967
PsiI	TTATAA	1 cut(s)	414
Psp5II	RGGWCCY	1 cut(s)	967
Psp6I	CCWGG	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	104, 105
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	4 cut(s)	103, 104, 653, 967
PspPPI	RGGWCCY	1 cut(s)	967
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	2 cut(s)	129, 259
RsaI	GTAC	4 cut(s)	82, 180, 621, 771
RsaNI	GTAC	4 cut(s)	81, 179, 620, 770
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	6 cut(s)	125, 144, 303, 422, 852, 893
SatI	GCNGC	3 cut(s)	273, 276, 1047
Sau3AI	GATC	6 cut(s)	129, 259, 430, 450, 628, 748
Sau96I	GGNCC	4 cut(s)	103, 104, 653, 967
ScrFI	CCNGG	2 cut(s)	101, 108
SduI	GDGCHC	2 cut(s)	107, 325
SfaNI	GCATC	2 cut(s)	773, 1096
SfcI	CTRYAG	2 cut(s)	165, 1098
SinI	GGWCC	2 cut(s)	653, 967
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	2 cut(s)	134, 884
SmoI	CTYRAG	2 cut(s)	134, 884
SsiI	CCGC	1 cut(s)	434
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	3 cut(s)	266, 714, 1022
StyD4I	CCNGG	2 cut(s)	99, 106
StyI	CCWWGG	2 cut(s)	993, 1033
TaaI	ACNGT	3 cut(s)	80, 195, 1010
TaqI	TCGA	1 cut(s)	763
TatI	WGTACW	2 cut(s)	178, 769
TfiI	GAWTC	4 cut(s)	185, 232, 875, 1111
Tru1I	TTAA	6 cut(s)	125, 144, 303, 422, 852, 893
Tru9I	TTAA	6 cut(s)	125, 144, 303, 422, 852, 893
TscAI	CASTG	3 cut(s)	51, 200, 547
TseFI	GTSAC	1 cut(s)	931
TseI	GCWGC	3 cut(s)	272, 275, 1046
Tsp45I	GTSAC	1 cut(s)	931
TspDTI	ATGAA	2 cut(s)	601, 888
TspRI	CASTG	3 cut(s)	51, 200, 547
Van91I	CCANNNNNTGG	1 cut(s)	650
VpaK11BI	GGWCC	2 cut(s)	653, 967
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	3 cut(s)	340, 606, 1117
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	3 cut(s)	266, 714, 1022
Zsp2I	ATGCAT	2 cut(s)	496, 788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.