Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

7152716 .. 7159718

Gene Structure 7003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G129800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATGCATCAACAGTGTTATATAACCAGCTCAAGGCAGCAGAACCATTTTTCTTATTAGCGGGTCCCAATGTGATTGAATCCGAAGAGCACATTTTCCGGATGGCCAAGCACATAAAGCATGTTGCAACAAAAGTTGGATTGCCACTGGTTTTCAAGTCAAGCTTTGACAAAGCCAACCGTACATCCTCAAAATCATTCCGGGGTCCTGGCCTCACTGAAGGCTTAAAGATCCTTGAAAAGGTTAAAGTAGCATATGACATCCCTATAATTACAGATGTGCACGAAGCTAGCCAGTGTGAAGAAGTTGGTAAAGTTGCAGACATTATTCAGATTCCTGCATTTTTGTGCCGCCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAAATTATCAACATTAAGAAAGGCCAATTCTGTGCACCTTCTGTCATGGTAAATTCAGCTGAGAAGGTTAGACTGGCTGGAAATCCAAACGTGATGGTCTGTGAAAGGGGAACTATGTTTGGCTATAATGATTTAATTGTTGATCCGCGCAATTTGGAGTGGATCAGAGAAGCTAATTGTCCAGTTGTTGCTGATGTAACACATGCATTGCAACAGCCCGCTGGGAGAAAGTTGGATGATGGAGGTGTAGCCAGTGGTGGTCTTCGTGAATTGATTCCGTGCATTGCAAGGACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGGTACACGATGATCCTTCTAACGCGCCGGTTGATGGTCCAACTCAATGGCCCTTGCGCCATTTGGAGGAACTGCTGGTAGAGCTTGTAGCAATTGCTAGGGTAAGCAAGGGGAAGCAACACTTCAACATTGATCTCACACCCTATTGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

291

Amino Acids

31.63

Weight (kDa)

6.26

Isoelectric Point (pI)

28.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	538, 743
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	4 cut(s)	62, 352, 536, 609
AclWI	GGATC	4 cut(s)	226, 527, 560, 725
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	442, 708
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	184, 723
AfiI	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
AgsI	TTSAA	4 cut(s)	80, 157, 239, 844
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	6 cut(s)	31, 165, 290, 449, 563, 802
AluI	AGCT	6 cut(s)	31, 165, 290, 449, 563, 802
Alw21I	GWGCWC	3 cut(s)	93, 285, 427
Alw44I	GTGCAC	2 cut(s)	281, 423
AlwI	GGATC	4 cut(s)	226, 527, 560, 725
AlwNI	CAGNNNCTG	1 cut(s)	692
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	4 cut(s)	105, 211, 412, 767
ApaLI	GTGCAC	2 cut(s)	281, 423
ApeKI	GCWGC	3 cut(s)	38, 374, 377
ApoI	RAATTY	2 cut(s)	442, 708
Asp700I	GAANNNNTTC	1 cut(s)	663
AspLEI	GCGC	3 cut(s)	540, 745, 777
AspS9I	GGNCC	4 cut(s)	65, 206, 755, 768
AsuC2I	CCSGG	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	65, 206, 755
BaeGI	GKGCMC	2 cut(s)	285, 427
BalI	TGGCCA	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	3 cut(s)	93, 285, 427
BbvI	GCAGC	3 cut(s)	50, 386, 389
BccI	CCATC	5 cut(s)	97, 478, 623, 698, 746
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	3 cut(s)	291, 368, 816
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	4 cut(s)	39, 352, 375, 378
BlsI	GCNGC	4 cut(s)	40, 353, 376, 379
Bme1390I	CCNGG	2 cut(s)	203, 210
Bme18I	GGWCC	3 cut(s)	65, 206, 755
BmgT120I	GGNCC	4 cut(s)	65, 206, 755, 768
BmiI	GGNNCC	3 cut(s)	66, 67, 207
BmrFI	CCNGG	2 cut(s)	203, 210
BmsI	GCATC	1 cut(s)	17
BmtI	GCTAGC	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	644
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	202
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
Bse118I	RCCGGY	1 cut(s)	745
Bse1I	ACTGG	6 cut(s)	153, 295, 391, 468, 572, 642
Bse3DI	GCAATG	2 cut(s)	596, 672
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	6 cut(s)	10, 108, 185, 261, 631, 709
BseLI	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
BseMI	GCAATG	2 cut(s)	596, 672
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	6 cut(s)	153, 295, 391, 468, 572, 642
BseSI	GKGCMC	2 cut(s)	285, 427
BseXI	GCAGC	3 cut(s)	50, 386, 389
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	2 cut(s)	538, 743
BshFI	GGCC	4 cut(s)	107, 213, 414, 769
BsiHKAI	GWGCWC	3 cut(s)	93, 285, 427
BsiSI	CCGG	3 cut(s)	100, 202, 746
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	4 cut(s)	107, 213, 414, 769
Bsp1286I	GDGCHC	3 cut(s)	93, 285, 427
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
BspACI	CCGC	4 cut(s)	62, 352, 536, 609
BspANI	GGCC	4 cut(s)	107, 213, 414, 769
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	538, 743
BspLI	GGNNCC	3 cut(s)	66, 67, 207
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	4 cut(s)	226, 527, 560, 725
BspQI	GCTCTTC	1 cut(s)	81
BsrDI	GCAATG	2 cut(s)	596, 672
BsrFI	RCCGGY	1 cut(s)	745
BsrI	ACTGG	6 cut(s)	153, 295, 391, 468, 572, 642
BssAI	RCCGGY	1 cut(s)	745
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	16, 182
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	292, 609
BstDEI	CTNAG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	6 cut(s)	10, 108, 185, 261, 631, 709
BstFNI	CGCG	2 cut(s)	538, 743
BstHHI	GCGC	3 cut(s)	540, 745, 777
BstKTI	GATC	6 cut(s)	234, 364, 535, 555, 733, 853
BstMBI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 683, 799
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	2 cut(s)	125, 596
BstSCI	CCNGG	2 cut(s)	201, 208
BstSLI	GKGCMC	2 cut(s)	285, 427
BstUI	CGCG	2 cut(s)	538, 743
BstV1I	GCAGC	3 cut(s)	50, 386, 389
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	2 cut(s)	231, 361
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	2 cut(s)	231, 361
BsuRI	GGCC	4 cut(s)	107, 213, 414, 769
BtsCI	GGATG	6 cut(s)	10, 108, 185, 261, 631, 709
BtsIMutI	CAGTG	5 cut(s)	21, 146, 216, 302, 649
Cac8I	GCNNGC	2 cut(s)	292, 609
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	3 cut(s)	540, 745, 777
Cfr10I	RCCGGY	1 cut(s)	745
Cfr13I	GGNCC	4 cut(s)	65, 206, 755, 768
Csp6I	GTAC	2 cut(s)	183, 722
CviAII	CATG	4 cut(s)	122, 436, 593, 715
CviQI	GTAC	2 cut(s)	183, 722
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	6 cut(s)	233, 363, 534, 554, 732, 852
DpnII	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
EaeI	YGGCCR	1 cut(s)	105
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco47I	GGWCC	3 cut(s)	65, 206, 755
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	2 cut(s)	65, 206
EcoRII	CCWGG	1 cut(s)	208
EcoT22I	ATGCAT	2 cut(s)	10, 598
FaeI	CATG	4 cut(s)	125, 439, 596, 718
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 824, 856
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	4 cut(s)	121, 435, 592, 714
FauI	CCCGC	2 cut(s)	55, 616
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	4 cut(s)	39, 352, 375, 378
FokI	GGATG	6 cut(s)	17, 115, 172, 248, 638, 716
Fsp4HI	GCNGC	4 cut(s)	39, 352, 375, 378
FspBI	CTAG	3 cut(s)	291, 368, 816
GlaI	GCGC	3 cut(s)	539, 744, 776
GluI	GCNGC	4 cut(s)	39, 352, 375, 378
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	107, 213, 414, 769
HapII	CCGG	3 cut(s)	100, 202, 746
HhaI	GCGC	3 cut(s)	540, 745, 777
Hin1II	CATG	4 cut(s)	125, 439, 596, 718
Hin6I	GCGC	3 cut(s)	538, 743, 775
HinP1I	GCGC	3 cut(s)	538, 743, 775
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	3 cut(s)	80, 334, 664
HpaII	CCGG	3 cut(s)	100, 202, 746
Hpy166II	GTNNAC	3 cut(s)	283, 425, 724
Hpy188I	TCNGA	3 cut(s)	85, 333, 557
Hpy188III	TCNNGA	2 cut(s)	100, 656
Hpy8I	GTNNAC	3 cut(s)	283, 425, 724
HpyAV	CCTTC	4 cut(s)	215, 438, 448, 744
HpyCH4III	ACNGT	2 cut(s)	16, 182
HpyCH4IV	ACGT	1 cut(s)	480
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 683, 799
HpyF3I	CTNAG	1 cut(s)	450
HpySE526I	ACGT	1 cut(s)	480
Hsp92II	CATG	4 cut(s)	125, 439, 596, 718
HspAI	GCGC	3 cut(s)	538, 743, 775
KflI	GGGWCCC	1 cut(s)	65
Kpn2I	TCCGGA	1 cut(s)	99
Kzo9I	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
LguI	GCTCTTC	1 cut(s)	81
Lsp1109I	GCAGC	3 cut(s)	50, 386, 389
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	3 cut(s)	291, 368, 816
MaeII	ACGT	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	6 cut(s)	233, 363, 534, 554, 732, 852
MboI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
MboII	GAAGA	4 cut(s)	98, 314, 356, 644
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	2 cut(s)	231, 361
MhlI	GDGCHC	3 cut(s)	93, 285, 427
MlsI	TGGCCA	1 cut(s)	107
MluNI	TGGCCA	1 cut(s)	107
MmeI	TCCRAC	4 cut(s)	118, 603, 676, 782
MnlI	CCTC	5 cut(s)	199, 224, 626, 712, 778
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	2 cut(s)	10, 598
MroI	TCCGGA	1 cut(s)	99
MroXI	GAANNNNTTC	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	4 cut(s)	227, 246, 405, 524
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	2 cut(s)	449, 611
MspI	CCGG	3 cut(s)	100, 202, 746
MspR9I	CCNGG	2 cut(s)	203, 210
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	538, 743
MwoI	GCNNNNNNNGC	3 cut(s)	118, 683, 799
NciI	CCSGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	4 cut(s)	125, 439, 596, 718
NlaIV	GGNNCC	3 cut(s)	66, 67, 207
NsiI	ATGCAT	2 cut(s)	10, 598
NspI	RCATGY	2 cut(s)	125, 596
PciSI	GCTCTTC	1 cut(s)	81
PdmI	GAANNNNTTC	1 cut(s)	663
PfeI	GAWTC	3 cut(s)	80, 334, 664
PkrI	GCNGC	4 cut(s)	40, 353, 376, 379
PpuMI	RGGWCCY	2 cut(s)	65, 206
Psp5II	RGGWCCY	2 cut(s)	65, 206
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	66, 67, 207
PspPI	GGNCC	4 cut(s)	65, 206, 755, 768
PspPPI	RGGWCCY	2 cut(s)	65, 206
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	231, 361
PvuII	CAGCTG	1 cut(s)	449
RsaI	GTAC	2 cut(s)	184, 723
RsaNI	GTAC	2 cut(s)	183, 722
RseI	CAYNNNNRTG	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	227, 246, 405, 524
SatI	GCNGC	4 cut(s)	39, 352, 375, 378
Sau3AI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
Sau96I	GGNCC	4 cut(s)	65, 206, 755, 768
ScrFI	CCNGG	2 cut(s)	203, 210
SduI	GDGCHC	3 cut(s)	93, 285, 427
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	3 cut(s)	65, 206, 755
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SsiI	CCGC	4 cut(s)	62, 352, 536, 609
SspMI	CTAG	3 cut(s)	291, 368, 816
StyD4I	CCNGG	2 cut(s)	201, 208
TaaI	ACNGT	2 cut(s)	16, 182
TaiI	ACGT	1 cut(s)	483
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	80, 334, 664
Tru1I	TTAA	4 cut(s)	227, 246, 405, 524
Tru9I	TTAA	4 cut(s)	227, 246, 405, 524
TscAI	CASTG	5 cut(s)	21, 153, 223, 302, 649
TseI	GCWGC	3 cut(s)	38, 374, 377
TspDTI	ATGAA	1 cut(s)	703
TspGWI	ACGGA	1 cut(s)	657
TspRI	CASTG	5 cut(s)	21, 153, 223, 302, 649
VneI	GTGCAC	2 cut(s)	281, 423
VpaK11BI	GGWCC	3 cut(s)	65, 206, 755
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	442, 708
XceI	RCATGY	2 cut(s)	125, 596
XmnI	GAANNNNTTC	1 cut(s)	663
XspI	CTAG	3 cut(s)	291, 368, 816
Zsp2I	ATGCAT	2 cut(s)	10, 598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.