Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

18553501 .. 18558719

Gene Structure 5219 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032744

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGCTTGGTAAAACGGTTGTGGTCTCGTCTCCTTCTCTACTCGATCACTCACTCAAGCTATCACTGTGTCAATTCAGCTCAGTGGCAGATATGGAATCATCAGCTTTGTTATACAATCAGCTTAAGACAGCAGAACCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGAATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTAGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTCGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGAACTACTGCTAGAGCTTATTGCAATTGCTAGGGTAAGCAAGGGGAAGCAACACTTCAACATTGATCTCTCACCCTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

306

Amino Acids

33.32

Weight (kDa)

6.19

Isoelectric Point (pI)

28.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	45 - 280	2.6e-60	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	606
AccB7I	CCANNNNNTGG	1 cut(s)	797
AccII	CGCG	1 cut(s)	628
AciI	CCGC	2 cut(s)	152, 626
AclWI	GGATC	4 cut(s)	316, 617, 650, 770
AcoI	YGGCCR	2 cut(s)	195, 812
AcsI	RAATTY	2 cut(s)	532, 753
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	3 cut(s)	274, 372, 768
AfiI	CCNNNNNNNGG	4 cut(s)	304, 331, 797, 829
AflII	CTTAAG	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	170, 247, 889
AjnI	CCWGG	1 cut(s)	298
AluBI	AGCT	9 cut(s)	58, 78, 104, 121, 255, 266, 344, 653, 847
AluI	AGCT	9 cut(s)	58, 78, 104, 121, 255, 266, 344, 653, 847
Alw21I	GWGCWC	2 cut(s)	183, 517
Alw26I	GTCTC	2 cut(s)	28, 33
AlwI	GGATC	4 cut(s)	316, 617, 650, 770
AlwNI	CAGNNNCTG	1 cut(s)	737
AoxI	GGCC	3 cut(s)	195, 295, 812
ApaI	GGGCCC	1 cut(s)	299
ApeKI	GCWGC	2 cut(s)	464, 467
ApoI	RAATTY	2 cut(s)	532, 753
AspLEI	GCGC	2 cut(s)	790, 822
AspS9I	GGNCC	4 cut(s)	155, 295, 296, 800
AsuC2I	CCSGG	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	894
AvaII	GGWCC	2 cut(s)	155, 800
BaeGI	GKGCMC	1 cut(s)	299
BalI	TGGCCA	1 cut(s)	197
BanII	GRGCYC	1 cut(s)	299
BbsI	GAAGAC	1 cut(s)	689
Bbv12I	GWGCWC	2 cut(s)	183, 517
BbvI	GCAGC	2 cut(s)	476, 479
BccI	CCATC	3 cut(s)	568, 743, 791
BceAI	ACGGC	2 cut(s)	426, 799
BciT130I	CCWGG	1 cut(s)	300
BcnI	CCSGG	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	28, 33
BfaI	CTAG	3 cut(s)	458, 842, 861
BfmI	CTRYAG	1 cut(s)	357
BfrI	CTTAAG	1 cut(s)	122
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	2 cut(s)	465, 468
BlsI	GCNGC	2 cut(s)	466, 469
Bme1390I	CCNGG	2 cut(s)	293, 300
Bme18I	GGWCC	2 cut(s)	155, 800
BmgT120I	GGNCC	4 cut(s)	155, 295, 296, 800
BmiI	GGNNCC	3 cut(s)	156, 296, 297
BmrFI	CCNGG	2 cut(s)	293, 300
BpiI	GAAGAC	1 cut(s)	689
BpuEI	CTTGAG	2 cut(s)	38, 347
BpuMI	CCSGG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	174, 292, 298
Bsc4I	CCNNNNNNNGG	4 cut(s)	304, 331, 797, 829
Bse1I	ACTGG	5 cut(s)	243, 481, 558, 687, 791
BseBI	CCWGG	1 cut(s)	300
BseDI	CCNNGG	3 cut(s)	174, 292, 298
BseGI	GGATG	3 cut(s)	275, 676, 754
BseLI	CCNNNNNNNGG	4 cut(s)	304, 331, 797, 829
BseMII	CTCAG	2 cut(s)	93, 531
BseNI	ACTGG	5 cut(s)	243, 481, 558, 687, 791
BseRI	GAGGAG	1 cut(s)	191
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	476, 479
Bsh1236I	CGCG	1 cut(s)	628
BshFI	GGCC	3 cut(s)	197, 297, 814
BsiHKAI	GWGCWC	2 cut(s)	183, 517
BsiSI	CCGG	1 cut(s)	292
BslI	CCNNNNNNNGG	4 cut(s)	304, 331, 797, 829
BsmAI	GTCTC	2 cut(s)	28, 33
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	3 cut(s)	197, 297, 814
Bso31I	GGTCTC	1 cut(s)	28
Bsp120I	GGGCCC	1 cut(s)	295
Bsp1286I	GDGCHC	3 cut(s)	183, 299, 517
Bsp1407I	TGTACA	1 cut(s)	370
Bsp143I	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
BspACI	CCGC	2 cut(s)	152, 626
BspANI	GGCC	3 cut(s)	197, 297, 814
BspCNI	CTCAG	2 cut(s)	92, 532
BspFNI	CGCG	1 cut(s)	628
BspLI	GGNNCC	3 cut(s)	156, 296, 297
BspPI	GGATC	4 cut(s)	316, 617, 650, 770
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	1 cut(s)	28
BsrGI	TGTACA	1 cut(s)	370
BsrI	ACTGG	5 cut(s)	243, 481, 558, 687, 791
BssECI	CCNNGG	3 cut(s)	174, 292, 298
BssMI	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
Bst2UI	CCWGG	1 cut(s)	300
Bst4CI	ACNGT	5 cut(s)	16, 66, 138, 272, 387
BstAFI	CTTAAG	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	79, 540
BstENI	CCTNNNNNAGG	1 cut(s)	329
BstF5I	GGATG	3 cut(s)	275, 676, 754
BstFNI	CGCG	1 cut(s)	628
BstHHI	GCGC	2 cut(s)	790, 822
BstKTI	GATC	7 cut(s)	46, 324, 454, 625, 645, 778, 898
BstMAI	GTCTC	2 cut(s)	28, 33
BstMBI	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
BstMWI	GCNNNNNNNGC	1 cut(s)	728
BstNI	CCWGG	1 cut(s)	300
BstSCI	CCNGG	2 cut(s)	291, 298
BstSFI	CTRYAG	1 cut(s)	357
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	1 cut(s)	628
BstV1I	GCAGC	2 cut(s)	476, 479
BstV2I	GAAGAC	1 cut(s)	689
BstX2I	RGATCY	2 cut(s)	321, 451
BstXI	CCANNNNNNTGG	1 cut(s)	810
BstYI	RGATCY	2 cut(s)	321, 451
BsuRI	GGCC	3 cut(s)	197, 297, 814
BtsCI	GGATG	3 cut(s)	275, 676, 754
BtsIMutI	CAGTG	5 cut(s)	62, 87, 236, 392, 694
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	2 cut(s)	790, 822
Cfr13I	GGNCC	4 cut(s)	155, 295, 296, 800
Csp6I	GTAC	3 cut(s)	273, 371, 767
CviAII	CATG	5 cut(s)	304, 526, 714, 760, 770
CviQI	GTAC	3 cut(s)	273, 371, 767
DdeI	CTNAG	2 cut(s)	79, 540
DpnI	GATC	7 cut(s)	45, 323, 453, 624, 644, 777, 897
DpnII	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
EaeI	YGGCCR	2 cut(s)	195, 812
Eco24I	GRGCYC	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	2 cut(s)	155, 800
Eco57I	CTGAAG	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	329
EcoO109I	RGGNCCY	2 cut(s)	295, 296
EcoRII	CCWGG	1 cut(s)	298
EcoRV	GATATC	1 cut(s)	415
EcoT38I	GRGCYC	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	5 cut(s)	307, 529, 717, 763, 773
FalI	AAGNNNNNCTT	4 cut(s)	239, 271, 869, 901
FatI	CATG	5 cut(s)	303, 525, 713, 759, 769
FauI	CCCGC	1 cut(s)	145
Fnu4HI	GCNGC	2 cut(s)	465, 468
FokI	GGATG	3 cut(s)	262, 683, 761
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	2 cut(s)	465, 468
FspBI	CTAG	3 cut(s)	458, 842, 861
GlaI	GCGC	2 cut(s)	789, 821
GluI	GCNGC	2 cut(s)	465, 468
HaeIII	GGCC	3 cut(s)	197, 297, 814
HapII	CCGG	1 cut(s)	292
HhaI	GCGC	2 cut(s)	790, 822
Hin1II	CATG	5 cut(s)	307, 529, 717, 763, 773
Hin6I	GCGC	2 cut(s)	788, 820
HinP1I	GCGC	2 cut(s)	788, 820
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	4 cut(s)	95, 170, 377, 424
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	1 cut(s)	894
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	6 cut(s)	159, 175, 191, 423, 447, 647
Hpy188III	TCNNGA	2 cut(s)	701, 911
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	6 cut(s)	42, 305, 325, 493, 528, 789
HpyCH4III	ACNGT	5 cut(s)	16, 66, 138, 272, 387
HpyCH4V	TGCA	5 cut(s)	410, 431, 464, 722, 854
HpyF10VI	GCNNNNNNNGC	1 cut(s)	728
HpyF3I	CTNAG	2 cut(s)	79, 540
Hsp92II	CATG	5 cut(s)	307, 529, 717, 763, 773
HspAI	GCGC	2 cut(s)	788, 820
Kzo9I	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
LmnI	GCTCC	2 cut(s)	178, 520
Lsp1109I	GCAGC	2 cut(s)	476, 479
MaeI	CTAG	3 cut(s)	458, 842, 861
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	7 cut(s)	45, 323, 453, 624, 644, 777, 897
MboI	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
MboII	GAAGA	4 cut(s)	404, 446, 556, 689
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	2 cut(s)	321, 451
MhlI	GDGCHC	3 cut(s)	183, 299, 517
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	9 cut(s)	71, 506, 532, 615, 631, 655, 704, 753, 855
MluNI	TGGCCA	1 cut(s)	197
MmeI	TCCRAC	2 cut(s)	208, 827
MnlI	CCTC	7 cut(s)	169, 289, 362, 579, 671, 757, 823
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	5 cut(s)	123, 317, 336, 495, 614
MslI	CAYNNNNRTG	1 cut(s)	436
Msp20I	TGGCCA	1 cut(s)	197
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	1 cut(s)	292
MspR9I	CCNGG	2 cut(s)	293, 300
MunI	CAATTG	1 cut(s)	855
MvaI	CCWGG	1 cut(s)	300
MvnI	CGCG	1 cut(s)	628
MwoI	GCNNNNNNNGC	1 cut(s)	728
NciI	CCSGG	1 cut(s)	293
NdeII	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
NlaIII	CATG	5 cut(s)	307, 529, 717, 763, 773
NlaIV	GGNNCC	3 cut(s)	156, 296, 297
PfeI	GAWTC	4 cut(s)	95, 170, 377, 424
PflMI	CCANNNNNTGG	1 cut(s)	797
PkrI	GCNGC	2 cut(s)	466, 469
PsiI	TTATAA	1 cut(s)	606
Psp6I	CCWGG	1 cut(s)	298
PspGI	CCWGG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	156, 296, 297
PspOMI	GGGCCC	1 cut(s)	295
PspPI	GGNCC	4 cut(s)	155, 295, 296, 800
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	2 cut(s)	321, 451
RsaI	GTAC	3 cut(s)	274, 372, 768
RsaNI	GTAC	3 cut(s)	273, 371, 767
RseI	CAYNNNNRTG	1 cut(s)	436
SaqAI	TTAA	5 cut(s)	123, 317, 336, 495, 614
SatI	GCNGC	2 cut(s)	465, 468
Sau3AI	GATC	7 cut(s)	43, 321, 451, 622, 642, 775, 895
Sau96I	GGNCC	4 cut(s)	155, 295, 296, 800
ScrFI	CCNGG	2 cut(s)	293, 300
SduI	GDGCHC	3 cut(s)	183, 299, 517
SfcI	CTRYAG	1 cut(s)	357
SinI	GGWCC	2 cut(s)	155, 800
SmiMI	CAYNNNNRTG	1 cut(s)	436
SmlI	CTYRAG	3 cut(s)	53, 122, 326
SmoI	CTYRAG	3 cut(s)	53, 122, 326
Sse9I	AATT	9 cut(s)	71, 506, 532, 615, 631, 655, 704, 753, 855
SsiI	CCGC	2 cut(s)	152, 626
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	3 cut(s)	458, 842, 861
StyD4I	CCNGG	2 cut(s)	291, 298
TaaI	ACNGT	5 cut(s)	16, 66, 138, 272, 387
TaqI	TCGA	1 cut(s)	42
TasI	AATT	9 cut(s)	71, 506, 532, 615, 631, 655, 704, 753, 855
TatI	WGTACW	1 cut(s)	370
TfiI	GAWTC	4 cut(s)	95, 170, 377, 424
Tru1I	TTAA	5 cut(s)	123, 317, 336, 495, 614
Tru9I	TTAA	5 cut(s)	123, 317, 336, 495, 614
TscAI	CASTG	5 cut(s)	69, 87, 243, 392, 694
TseI	GCWGC	2 cut(s)	464, 467
TspDTI	ATGAA	1 cut(s)	748
TspGWI	ACGGA	1 cut(s)	690
TspRI	CASTG	5 cut(s)	69, 87, 243, 392, 694
Van91I	CCANNNNNTGG	1 cut(s)	797
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	2 cut(s)	155, 800
XagI	CCTNNNNNAGG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	532, 753
XspI	CTAG	3 cut(s)	458, 842, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.