AT1G79500

2-dehydro-3-deoxyphosphooctonate aldolase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001283
Physical Location & Seq
Forward (+)
29903353 .. 29906653
3301 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G79500.1

Sequence Viewer

Length: 873 bp
ATGGCGGCAACATCACTATTGTACAATCAGCTCAAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAATGTGATTGAATCCGAGGAACATATTCTTCGAATGGCAAAGCACATTAAAGACATTTCCACAAAAGTTGGGCTGCCCCTGGTTTTCAAGTCAAGTTTTGATAAAGCTAACAGAACTTCTTCAAAGTCATTTCGTGGTCCTGGCATGGCCGAGGGTCTGAAGATTCTTGAGAAGGTGAAGGTAGCATATGATCTACCAATAGTAACTGATGTTCATGAATCAAGCCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAGATTCCAGCATTCTTATGTCGCCAGACAGATCTTCTGGTTGCAGCAGCACAAACCGGAAAAATTATCAATATTAAGAAAGGACAATTCTGTGCTCCTTCTGTCATGGAGAATTCAGCTGAGAAGATCAGACTGGCTGGGAATCCAAATGTTATGGTTTGTGAAAGAGGAACCATGTTCGGATACAATGATTTGATAGTAGATCCACGAAACTTCGAGTGGATGAGAGAAGCTAATTGTCCTGTTGTCGCTGATATAACCCATTCACTACAACAACCTGCAGGCAAGAAGTTGGATGGTGGTGGTGTTGCAAGTGGAGGCCTTCGCGAGTTAATACCATGCATTGCAAGAACAGCTGTAGCAGTTGGCGTCGATGGAATTTTCATGGAGGTTCATGATGATCCTCTAAGTGCTCCAGTTGATGGTCCAACTCAATGGCCTTTGCGCCATCTAGAAGAACTCCTGGAAGAGCTCATTGCGATTGCGAGGGTTACAAAAGGGAAGCAGCGGCTTCAAATCGACCTTACACCCTACCGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00540 ko01100 map00540 map01100
Pfam Domains
Protein Families
DAHP_synth_1

Protein Analysis

290

Amino Acids

31.66

Weight (kDa)

6.33

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAHP_synth_1 PF00793 15 - 267 8.3e-65 DAHP synthetase I family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 616
AccB7I CCANNNNNTGG 1 cut(s) 752
AccII CGCG 1 cut(s) 657
AciI CCGC 2 cut(s) 5, 838
AclWI GGATC 2 cut(s) 527, 725
AcoI YGGCCR 1 cut(s) 216
AcsI RAATTY 2 cut(s) 442, 708
AcuI CTGAAG 1 cut(s) 248
AcyI GRCGYC 1 cut(s) 699
AfaI GTAC 1 cut(s) 23
AfiI CCNNNNNNNGG 1 cut(s) 752
AgsI TTSAA 4 cut(s) 80, 157, 192, 845
AjnI CCWGG 3 cut(s) 147, 208, 792
AluBI AGCT 6 cut(s) 31, 176, 449, 563, 686, 802
AluI AGCT 6 cut(s) 31, 176, 449, 563, 686, 802
Alw21I GWGCWC 3 cut(s) 427, 745, 804
AlwI GGATC 2 cut(s) 527, 725
AoxI GGCC 3 cut(s) 216, 649, 767
ApeKI GCWGC 5 cut(s) 38, 142, 374, 377, 835
ApoI RAATTY 2 cut(s) 442, 708
Asp700I GAANNNNTTC 2 cut(s) 93, 187
AspLEI GCGC 1 cut(s) 777
AspS9I GGNCC 3 cut(s) 65, 206, 755
AsuHPI GGTGA 1 cut(s) 256
AsuII TTCGAA 1 cut(s) 100
AvaII GGWCC 3 cut(s) 65, 206, 755
BanII GRGCYC 1 cut(s) 804
Bbv12I GWGCWC 3 cut(s) 427, 745, 804
BbvI GCAGC 5 cut(s) 25, 129, 386, 389, 847
BccI CCATC 4 cut(s) 620, 698, 746, 786
BciT130I CCWGG 3 cut(s) 149, 210, 794
BciVI GTATCC 1 cut(s) 506
BfaI CTAG 1 cut(s) 782
BfmI CTRYAG 2 cut(s) 609, 687
BfuAI ACCTGC 1 cut(s) 616
BfuI GTATCC 1 cut(s) 506
BglII AGATCT 1 cut(s) 361
BisI GCNGC 7 cut(s) 6, 39, 143, 375, 378, 836, 839
BlsI GCNGC 7 cut(s) 7, 40, 144, 376, 379, 837, 840
Bme1390I CCNGG 3 cut(s) 149, 210, 794
Bme18I GGWCC 3 cut(s) 65, 206, 755
BmgT120I GGNCC 3 cut(s) 65, 206, 755
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 3 cut(s) 149, 210, 794
BpmI CTGGAG 1 cut(s) 729
Bpu14I TTCGAA 1 cut(s) 100
BpuEI CTTGAG 2 cut(s) 17, 257
BsaHI GRCGYC 1 cut(s) 699
BsaJI CCNNGG 3 cut(s) 84, 147, 219
BsaWI WCCGGW 1 cut(s) 386
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse1I ACTGG 3 cut(s) 295, 468, 746
Bse3DI GCAATG 2 cut(s) 672, 804
BseBI CCWGG 3 cut(s) 149, 210, 794
BseDI CCNNGG 3 cut(s) 84, 147, 219
BseGI GGATG 2 cut(s) 558, 631
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMI GCAATG 2 cut(s) 672, 804
BseMII CTCAG 1 cut(s) 441
BseNI ACTGG 3 cut(s) 295, 468, 746
BseXI GCAGC 5 cut(s) 25, 129, 386, 389, 847
BseYI CCCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 3 cut(s) 218, 651, 769
BsiHKAI GWGCWC 3 cut(s) 427, 745, 804
BsiSI CCGG 1 cut(s) 387
BslI CCNNNNNNNGG 1 cut(s) 752
BsmI GAATGC 1 cut(s) 341
BsnI GGCC 3 cut(s) 218, 651, 769
Bsp119I TTCGAA 1 cut(s) 100
Bsp1286I GDGCHC 3 cut(s) 427, 745, 804
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 5 cut(s) 259, 361, 456, 532, 730
Bsp68I TCGCGA 1 cut(s) 657
BspACI CCGC 2 cut(s) 5, 838
BspANI GGCC 3 cut(s) 218, 651, 769
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 657
BspHI TCATGA 2 cut(s) 283, 724
BspLI GGNNCC 1 cut(s) 502
BspMAI CTGCAG 1 cut(s) 613
BspMI ACCTGC 1 cut(s) 616
BspPI GGATC 2 cut(s) 527, 725
BspQI GCTCTTC 1 cut(s) 792
BspT104I TTCGAA 1 cut(s) 100
BsrDI GCAATG 2 cut(s) 672, 804
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 3 cut(s) 295, 468, 746
BssECI CCNNGG 3 cut(s) 84, 147, 219
BssMI GATC 5 cut(s) 259, 361, 456, 532, 730
BssNI GRCGYC 1 cut(s) 699
Bst2UI CCWGG 3 cut(s) 149, 210, 794
Bst4CI ACNGT 1 cut(s) 866
Bst6I CTCTTC 1 cut(s) 792
BstACI GRCGYC 1 cut(s) 699
BstAUI TGTACA 1 cut(s) 21
BstBI TTCGAA 1 cut(s) 100
BstC8I GCNNGC 1 cut(s) 613
BstDEI CTNAG 2 cut(s) 450, 737
BstF5I GGATG 2 cut(s) 558, 631
BstFNI CGCG 1 cut(s) 657
BstHHI GCGC 1 cut(s) 777
BstKTI GATC 5 cut(s) 262, 364, 459, 535, 733
BstMBI GATC 5 cut(s) 259, 361, 456, 532, 730
BstMWI GCNNNNNNNGC 1 cut(s) 683
BstNI CCWGG 3 cut(s) 149, 210, 794
BstSCI CCNGG 3 cut(s) 147, 208, 792
BstSFI CTRYAG 2 cut(s) 609, 687
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 5 cut(s) 25, 129, 386, 389, 847
BstX2I RGATCY 2 cut(s) 361, 532
BstXI CCANNNNNNTGG 1 cut(s) 765
BstYI RGATCY 2 cut(s) 361, 532
BsuI GTATCC 1 cut(s) 506
BsuRI GGCC 3 cut(s) 218, 651, 769
BtsCI GGATG 2 cut(s) 558, 631
BtsIMutI CAGTG 1 cut(s) 302
BtuMI TCGCGA 1 cut(s) 657
BveI ACCTGC 1 cut(s) 616
Cac8I GCNNGC 1 cut(s) 613
CciI TCATGA 2 cut(s) 283, 724
CfoI GCGC 1 cut(s) 777
Cfr13I GGNCC 3 cut(s) 65, 206, 755
CseI GACGC 1 cut(s) 688
Csp6I GTAC 1 cut(s) 22
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 7 cut(s) 214, 284, 436, 505, 669, 715, 725
CviQI GTAC 1 cut(s) 22
DdeI CTNAG 2 cut(s) 450, 737
DpnI GATC 5 cut(s) 261, 363, 458, 534, 732
DpnII GATC 5 cut(s) 259, 361, 456, 532, 730
EaeI YGGCCR 1 cut(s) 216
Eam1104I CTCTTC 1 cut(s) 792
EarI CTCTTC 1 cut(s) 792
Ecl136II GAGCTC 1 cut(s) 802
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 804
Eco47I GGWCC 3 cut(s) 65, 206, 755
Eco53kI GAGCTC 1 cut(s) 802
Eco57I CTGAAG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 802
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 3 cut(s) 147, 208, 792
EcoT22I ATGCAT 1 cut(s) 674
EcoT38I GRGCYC 1 cut(s) 804
FaeI CATG 7 cut(s) 217, 287, 439, 508, 672, 718, 728
FatI CATG 7 cut(s) 213, 283, 435, 504, 668, 714, 724
FauNDI CATATG 1 cut(s) 256
Fnu4HI GCNGC 7 cut(s) 6, 39, 143, 375, 378, 836, 839
FokI GGATG 2 cut(s) 565, 638
FriOI GRGCYC 1 cut(s) 804
Fsp4HI GCNGC 7 cut(s) 6, 39, 143, 375, 378, 836, 839
FspBI CTAG 1 cut(s) 782
GlaI GCGC 1 cut(s) 776
GluI GCNGC 7 cut(s) 6, 39, 143, 375, 378, 836, 839
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 3 cut(s) 218, 651, 769
HapII CCGG 1 cut(s) 387
HgaI GACGC 1 cut(s) 688
HhaI GCGC 1 cut(s) 777
Hin1I GRCGYC 1 cut(s) 699
Hin1II CATG 7 cut(s) 217, 287, 439, 508, 672, 718, 728
Hin6I GCGC 1 cut(s) 775
HinP1I GCGC 1 cut(s) 775
HinfI GANTC 5 cut(s) 80, 232, 287, 334, 472
HpaII CCGG 1 cut(s) 387
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 5 cut(s) 85, 228, 333, 461, 512
Hpy188III TCNNGA 5 cut(s) 236, 284, 656, 725, 782
Hpy99I CGWCG 1 cut(s) 704
HpyAV CCTTC 4 cut(s) 235, 241, 438, 662
HpyCH4III ACNGT 1 cut(s) 866
HpyCH4V TGCA 6 cut(s) 320, 374, 611, 641, 672, 677
HpyF10VI GCNNNNNNNGC 1 cut(s) 683
HpyF3I CTNAG 2 cut(s) 450, 737
Hsp92I GRCGYC 1 cut(s) 699
Hsp92II CATG 7 cut(s) 217, 287, 439, 508, 672, 718, 728
HspAI GCGC 1 cut(s) 775
Kzo9I GATC 5 cut(s) 259, 361, 456, 532, 730
LguI GCTCTTC 1 cut(s) 792
LmnI GCTCC 2 cut(s) 430, 748
Lsp1109I GCAGC 5 cut(s) 25, 129, 386, 389, 847
MaeI CTAG 1 cut(s) 782
MaeIII GTNAC 2 cut(s) 271, 820
MalI GATC 5 cut(s) 261, 363, 458, 534, 732
MboI GATC 5 cut(s) 259, 361, 456, 532, 730
MboII GAAGA 8 cut(s) 43, 89, 180, 241, 356, 466, 797, 809
MflI RGATCY 2 cut(s) 361, 532
MhlI GDGCHC 3 cut(s) 427, 745, 804
MluCI AATT 6 cut(s) 327, 393, 416, 442, 565, 708
MmeI TCCRAC 2 cut(s) 603, 782
MnlI CCTC 7 cut(s) 79, 214, 491, 641, 712, 744, 810
Mph1103I ATGCAT 1 cut(s) 674
MroXI GAANNNNTTC 2 cut(s) 93, 187
MseI TTAA 4 cut(s) 117, 405, 662, 871
MslI CAYNNNNRTG 1 cut(s) 346
MspA1I CMGCKG 3 cut(s) 449, 686, 838
MspI CCGG 1 cut(s) 387
MspR9I CCNGG 3 cut(s) 149, 210, 794
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 3 cut(s) 149, 210, 794
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 1 cut(s) 683
NdeI CATATG 1 cut(s) 256
NdeII GATC 5 cut(s) 259, 361, 456, 532, 730
NlaIII CATG 7 cut(s) 217, 287, 439, 508, 672, 718, 728
NlaIV GGNNCC 1 cut(s) 502
NmeAIII GCCGAG 1 cut(s) 244
NruI TCGCGA 1 cut(s) 657
NsiI ATGCAT 1 cut(s) 674
NspV TTCGAA 1 cut(s) 100
PagI TCATGA 2 cut(s) 283, 724
PceI AGGCCT 1 cut(s) 651
PciSI GCTCTTC 1 cut(s) 792
PctI GAATGC 1 cut(s) 341
PdmI GAANNNNTTC 2 cut(s) 93, 187
PfeI GAWTC 5 cut(s) 80, 232, 287, 334, 472
PflMI CCANNNNNTGG 1 cut(s) 752
PfoI TCCNGGA 1 cut(s) 792
PkrI GCNGC 7 cut(s) 7, 40, 144, 376, 379, 837, 840
Psp124BI GAGCTC 1 cut(s) 804
Psp6I CCWGG 3 cut(s) 147, 208, 792
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 3 cut(s) 147, 208, 792
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 3 cut(s) 65, 206, 755
PsrI GAACNNNNNNTAC 2 cut(s) 264, 296
PstI CTGCAG 1 cut(s) 613
PsuI RGATCY 2 cut(s) 361, 532
PvuII CAGCTG 2 cut(s) 449, 686
RruI TCGCGA 1 cut(s) 657
RsaI GTAC 1 cut(s) 23
RsaNI GTAC 1 cut(s) 22
RseI CAYNNNNRTG 1 cut(s) 346
SacI GAGCTC 1 cut(s) 804
SapI GCTCTTC 1 cut(s) 792
SaqAI TTAA 4 cut(s) 117, 405, 662, 871
SatI GCNGC 7 cut(s) 6, 39, 143, 375, 378, 836, 839
Sau3AI GATC 5 cut(s) 259, 361, 456, 532, 730
Sau96I GGNCC 3 cut(s) 65, 206, 755
SbfI CCTGCAGG 1 cut(s) 613
ScrFI CCNGG 3 cut(s) 149, 210, 794
SdaI CCTGCAGG 1 cut(s) 613
SduI GDGCHC 3 cut(s) 427, 745, 804
SfcI CTRYAG 2 cut(s) 609, 687
SfuI TTCGAA 1 cut(s) 100
SinI GGWCC 3 cut(s) 65, 206, 755
SmiMI CAYNNNNRTG 1 cut(s) 346
SmlI CTYRAG 2 cut(s) 32, 236
SmoI CTYRAG 2 cut(s) 32, 236
Sse8387I CCTGCAGG 1 cut(s) 613
Sse9I AATT 6 cut(s) 327, 393, 416, 442, 565, 708
SseBI AGGCCT 1 cut(s) 651
SsiI CCGC 2 cut(s) 5, 838
SspI AATATT 1 cut(s) 403
SspMI CTAG 1 cut(s) 782
SstI GAGCTC 1 cut(s) 804
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 3 cut(s) 147, 208, 792
TaaI ACNGT 1 cut(s) 866
TaqI TCGA 4 cut(s) 100, 546, 702, 849
TasI AATT 6 cut(s) 327, 393, 416, 442, 565, 708
TatI WGTACW 1 cut(s) 21
TauI GCSGC 2 cut(s) 8, 841
TfiI GAWTC 5 cut(s) 80, 232, 287, 334, 472
Tru1I TTAA 4 cut(s) 117, 405, 662, 871
Tru9I TTAA 4 cut(s) 117, 405, 662, 871
TscAI CASTG 1 cut(s) 302
TseI GCWGC 5 cut(s) 38, 142, 374, 377, 835
TspDTI ATGAA 4 cut(s) 272, 300, 703, 713
TspRI CASTG 1 cut(s) 302
Van91I CCANNNNNTGG 1 cut(s) 752
VpaK11BI GGWCC 3 cut(s) 65, 206, 755
XapI RAATTY 2 cut(s) 442, 708
XbaI TCTAGA 1 cut(s) 781
XmnI GAANNNNTTC 2 cut(s) 93, 187
XspI CTAG 1 cut(s) 782
Zsp2I ATGCAT 1 cut(s) 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.