Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

6924257 .. 6928655

Gene Structure 4399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0080000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGATAGGCAGGAAAATCCCACGCGCCGCAGAGAGCAAATCTGCTGAGGCTGAGGAGAGCGAGGATTTCTGGAAGGTCACGAGGAGTGAAAGGAGAGCCAGGAGAGCAAGGAGAGCCAGGAGAGCACGATCCGGCCGGGGATATGGTAGCAGCGTCAAGGTCAGGAAACCAAAGCGTCCACCTGCTGGAATTGTACCTTGCAGGACACTAGAACCAGATATCGTCACTTTTCCTGGCGTTGATGGTGCTGAGCCTACTACATGGTACTTTTACGATAGTCCAATCCCACCTCCTCCAAAGATGAGCAAAGCTGTGAGACGTTGTTGCTACCCACCCCCTGGAGTTCCGTCGTTTAATTTCGAAGATTATGATCTGAATGAAGTTGTGTTTACTGTTGAAGATGTACCCGGTGCAATCCCTGTTGATTTATTTGGAGATATTAAAATATTACCACGAACATGTAGCAAGGTCAAGGGCAGGAAAGGAAAGGAAAGCATTCACCTGCCTTTACATGATTTTGGCAGTTCTCCAGGAGTAGTTTCTGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

183

Amino Acids

20.34

Weight (kDa)

9.75

Isoelectric Point (pI)

65.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	190, 510
Acc36I	ACCTGC	2 cut(s)	190, 510
AccB7I	CCANNNNNTGG	2 cut(s)	185, 338
AccII	CGCG	1 cut(s)	24
AciI	CCGC	1 cut(s)	27
AclWI	GGATC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	133
AfaI	GTAC	3 cut(s)	195, 266, 405
AfiI	CCNNNNNNNGG	2 cut(s)	185, 338
AflIII	ACRYGT	1 cut(s)	458
AgsI	TTSAA	1 cut(s)	398
AjnI	CCWGG	5 cut(s)	98, 116, 232, 337, 529
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	123
AoxI	GGCC	1 cut(s)	133
ApeKI	GCWGC	1 cut(s)	150
Asp700I	GAANNNNTTC	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	26
AsuC2I	CCSGG	2 cut(s)	137, 408
AsuHPI	GGTGA	1 cut(s)	491
AsuII	TTCGAA	1 cut(s)	360
BauI	CACGAG	1 cut(s)	79
Bbv12I	GWGCWC	1 cut(s)	127
BbvCI	CCTCAGC	2 cut(s)	45, 51
BbvI	GCAGC	1 cut(s)	162
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	5 cut(s)	100, 118, 234, 339, 531
BcnI	CCSGG	2 cut(s)	137, 408
BcoDI	GTCTC	1 cut(s)	310
BfaI	CTAG	1 cut(s)	209
BfuAI	ACCTGC	2 cut(s)	190, 510
BisI	GCNGC	2 cut(s)	27, 151
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	2 cut(s)	28, 152
Bme1390I	CCNGG	7 cut(s)	100, 118, 137, 234, 339, 408, 531
BmrFI	CCNGG	7 cut(s)	100, 118, 137, 234, 339, 408, 531
BpmI	CTGGAG	2 cut(s)	360, 513
Bpu10I	CCTNAGC	2 cut(s)	45, 51
Bpu1102I	GCTNAGC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	360
BpuMI	CCSGG	2 cut(s)	137, 408
BsaBI	GATNNNNATC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	136, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 338
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	5 cut(s)	100, 118, 234, 339, 531
BseDI	CCNNGG	2 cut(s)	136, 337
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	185, 338
BseMII	CTCAG	3 cut(s)	36, 42, 240
BseRI	GAGGAG	3 cut(s)	68, 97, 282
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	162
Bsh1236I	CGCG	1 cut(s)	24
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	1 cut(s)	135
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	127
BsiSI	CCGG	3 cut(s)	132, 136, 408
BslI	CCNNNNNNNGG	2 cut(s)	185, 338
BsmAI	GTCTC	1 cut(s)	310
BsmBI	CGTCTC	1 cut(s)	310
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	128, 370
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	135
BspCNI	CTCAG	3 cut(s)	37, 43, 241
BspFNI	CGCG	1 cut(s)	24
BspMI	ACCTGC	2 cut(s)	190, 510
BspPI	GGATC	1 cut(s)	123
BspT104I	TTCGAA	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	136, 337
BssMI	GATC	2 cut(s)	128, 370
BssSI	CACGAG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	5 cut(s)	100, 118, 234, 339, 531
Bst4CI	ACNGT	1 cut(s)	394
BstBI	TTCGAA	1 cut(s)	360
BstDEI	CTNAG	3 cut(s)	45, 51, 249
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	131, 373
BstMAI	GTCTC	1 cut(s)	310
BstMBI	GATC	2 cut(s)	128, 370
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 113, 122
BstNI	CCWGG	5 cut(s)	100, 118, 234, 339, 531
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	7 cut(s)	98, 116, 135, 232, 337, 406, 529
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	162
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	135
BveI	ACCTGC	2 cut(s)	190, 510
CfoI	GCGC	1 cut(s)	26
CseI	GACGC	2 cut(s)	142, 164
Csp6I	GTAC	3 cut(s)	194, 265, 404
CviAII	CATG	3 cut(s)	261, 459, 512
CviJI	RGCY	6 cut(s)	50, 98, 116, 135, 253, 311
CviKI_1	RGCY	6 cut(s)	50, 98, 116, 135, 253, 311
CviQI	GTAC	3 cut(s)	194, 265, 404
DdeI	CTNAG	3 cut(s)	45, 51, 249
DpnI	GATC	2 cut(s)	130, 372
DpnII	GATC	2 cut(s)	128, 370
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	133
Eco32I	GATATC	1 cut(s)	220
Eco52I	CGGCCG	1 cut(s)	133
EcoRII	CCWGG	5 cut(s)	98, 116, 232, 337, 529
EcoRV	GATATC	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	310
FaeI	CATG	3 cut(s)	264, 462, 515
FaiI	YATR	5 cut(s)	144, 262, 369, 460, 513
FatI	CATG	3 cut(s)	260, 458, 511
Fnu4HI	GCNGC	2 cut(s)	27, 151
Fsp4HI	GCNGC	2 cut(s)	27, 151
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	25
GluI	GCNGC	2 cut(s)	27, 151
GsuI	CTGGAG	2 cut(s)	360, 513
HaeIII	GGCC	1 cut(s)	135
HapII	CCGG	3 cut(s)	132, 136, 408
HgaI	GACGC	2 cut(s)	142, 164
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	3 cut(s)	264, 462, 515
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HpaII	CCGG	3 cut(s)	132, 136, 408
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	2 cut(s)	179, 390
Hpy188I	TCNGA	2 cut(s)	375, 551
Hpy188III	TCNNGA	3 cut(s)	70, 79, 163
Hpy8I	GTNNAC	2 cut(s)	179, 390
Hpy99I	CGWCG	1 cut(s)	352
HpyAV	CCTTC	1 cut(s)	67
HpyCH4III	ACNGT	1 cut(s)	394
HpyCH4IV	ACGT	1 cut(s)	319
HpyCH4V	TGCA	2 cut(s)	201, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 113, 122
HpyF3I	CTNAG	3 cut(s)	45, 51, 249
HpySE526I	ACGT	1 cut(s)	319
Hsp92II	CATG	3 cut(s)	264, 462, 515
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	128, 370
Lsp1109I	GCAGC	1 cut(s)	162
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	319
MaeIII	GTNAC	2 cut(s)	76, 223
MalI	GATC	2 cut(s)	130, 372
MboI	GATC	2 cut(s)	128, 370
MboII	GAAGA	2 cut(s)	374, 410
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	2 cut(s)	189, 355
MnlI	CCTC	6 cut(s)	40, 46, 55, 75, 300, 303
MroXI	GAANNNNTTC	1 cut(s)	495
MseI	TTAA	2 cut(s)	354, 441
MslI	CAYNNNNRTG	1 cut(s)	457
MspI	CCGG	3 cut(s)	132, 136, 408
MspR9I	CCNGG	7 cut(s)	100, 118, 137, 234, 339, 408, 531
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	5 cut(s)	100, 118, 234, 339, 531
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	104, 113, 122
NciI	CCSGG	2 cut(s)	137, 408
NdeII	GATC	2 cut(s)	128, 370
NlaIII	CATG	3 cut(s)	264, 462, 515
NmuCI	GTSAC	2 cut(s)	76, 223
NspI	RCATGY	1 cut(s)	462
NspV	TTCGAA	1 cut(s)	360
PaqCI	CACCTGC	2 cut(s)	190, 510
PciI	ACATGT	1 cut(s)	458
PctI	GAATGC	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	495
PflMI	CCANNNNNTGG	2 cut(s)	185, 338
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	2 cut(s)	28, 152
PscI	ACATGT	1 cut(s)	458
Psp6I	CCWGG	5 cut(s)	98, 116, 232, 337, 529
PspGI	CCWGG	5 cut(s)	98, 116, 232, 337, 529
RsaI	GTAC	3 cut(s)	195, 266, 405
RsaNI	GTAC	3 cut(s)	194, 265, 404
RseI	CAYNNNNRTG	1 cut(s)	457
SaqAI	TTAA	2 cut(s)	354, 441
SatI	GCNGC	2 cut(s)	27, 151
Sau3AI	GATC	2 cut(s)	128, 370
ScrFI	CCNGG	7 cut(s)	100, 118, 137, 234, 339, 408, 531
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	9 cut(s)	78, 162, 184, 199, 292, 313, 322, 471, 504
SfuI	TTCGAA	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	457
Sse9I	AATT	2 cut(s)	189, 355
SsiI	CCGC	1 cut(s)	27
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	7 cut(s)	98, 116, 135, 232, 337, 406, 529
TaaI	ACNGT	1 cut(s)	394
TaiI	ACGT	1 cut(s)	322
TaqI	TCGA	1 cut(s)	360
TasI	AATT	2 cut(s)	189, 355
TauI	GCSGC	1 cut(s)	29
Tru1I	TTAA	2 cut(s)	354, 441
Tru9I	TTAA	2 cut(s)	354, 441
TseFI	GTSAC	2 cut(s)	76, 223
TseI	GCWGC	1 cut(s)	150
Tsp45I	GTSAC	2 cut(s)	76, 223
TspDTI	ATGAA	1 cut(s)	393
TspGWI	ACGGA	1 cut(s)	336
Van91I	CCANNNNNTGG	2 cut(s)	185, 338
XceI	RCATGY	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	495
XspI	CTAG	1 cut(s)	209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.