Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

76973118 .. 76977627

Gene Structure 4510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG553200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCGAGATTACGGGCATTCAGTTCGAGTACTTGGGAAGATAAGGGTTCGTGCCTCTGGTCATTGACATGGGTCATTCAGCATAGCTCGCTCGATTCAGTTGCCTCAAACCCTAGTCTCCTTGCAGCAACTTCTGGAATAGTGAAACCTTGGAACTCGCCTTCTGCTAAAATGGGATTTCTTAGGTATCTCTCATGCTCAAGAGACTTGCCACTGGATACAAGAATAAGCTCATCTCAAGAGAAACAAATCCGCTCCAAAGTCAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGAGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGCTACAAATGTACACGAGTTTATACAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGAGTTGGACAATCCTTGGTTGCTAAAACTGGAGCTCTCTCTGCCAAAAGTTACTCTCTGAAGACTCGCTCAGCTGTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

181

Amino Acids

20.03

Weight (kDa)

10.42

Isoelectric Point (pI)

41.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	82 - 146	7.3e-13	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	255
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	1 cut(s)	358
AcuI	CTGAAG	2 cut(s)	372, 542
AfaI	GTAC	3 cut(s)	31, 316, 414
AfiI	CCNNNNNNNGG	2 cut(s)	346, 373
AflII	CTTAAG	1 cut(s)	368
AgsI	TTSAA	1 cut(s)	289
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	8 cut(s)	87, 231, 297, 308, 386, 404, 497, 536
AluI	AGCT	8 cut(s)	87, 231, 297, 308, 386, 404, 497, 536
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	2 cut(s)	122, 198
AlwI	GGATC	1 cut(s)	358
AoxI	GGCC	1 cut(s)	337
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	338
BanII	GRGCYC	1 cut(s)	499
BauI	CACGAG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	443
BcgI	CGANNNNNNTGC	4 cut(s)	6, 40, 83, 117
BciT130I	CCWGG	1 cut(s)	342
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	122, 198
BfaI	CTAG	1 cut(s)	114
BfmI	CTRYAG	1 cut(s)	399
BfrI	CTTAAG	1 cut(s)	368
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	1 cut(s)	126
BlpI	GCTNAGC	1 cut(s)	532
BlsI	GCNGC	1 cut(s)	127
BmcAI	AGTACT	1 cut(s)	31
Bme1390I	CCNGG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	342
BoxI	GACNNNNGTC	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	513
Bpu1102I	GCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	2 cut(s)	184, 222
BsaJI	CCNNGG	4 cut(s)	149, 334, 340, 477
Bsc4I	CCNNNNNNNGG	2 cut(s)	346, 373
Bse1I	ACTGG	3 cut(s)	219, 285, 496
BseBI	CCWGG	1 cut(s)	342
BseDI	CCNNGG	4 cut(s)	149, 334, 340, 477
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	346, 373
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	219, 285, 496
BseXI	GCAGC	1 cut(s)	137
BshFI	GGCC	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	499
BslI	CCNNNNNNNGG	2 cut(s)	346, 373
BsmAI	GTCTC	2 cut(s)	122, 198
BsmI	GAATGC	1 cut(s)	17
BsnI	GGCC	1 cut(s)	339
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	412
Bsp143I	GATC	1 cut(s)	363
Bsp1720I	GCTNAGC	1 cut(s)	532
BspACI	CCGC	1 cut(s)	253
BspANI	GGCC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	545
BspPI	GGATC	1 cut(s)	358
BspTI	CTTAAG	1 cut(s)	368
BsrBI	CCGCTC	1 cut(s)	255
BsrGI	TGTACA	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	219, 285, 496
BssECI	CCNNGG	4 cut(s)	149, 334, 340, 477
BssMI	GATC	1 cut(s)	363
BssSI	CACGAG	1 cut(s)	416
BssT1I	CCWWGG	2 cut(s)	149, 477
Bst2BI	CACGAG	1 cut(s)	416
Bst2UI	CCWGG	1 cut(s)	342
Bst4CI	ACNGT	1 cut(s)	314
BstAFI	CTTAAG	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	412
BstC8I	GCNNGC	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	182, 532
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	1 cut(s)	317
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	2 cut(s)	122, 198
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 503
BstNI	CCWGG	1 cut(s)	342
BstPAI	GACNNNNGTC	1 cut(s)	71
BstSCI	CCNGG	1 cut(s)	340
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	137
BstV2I	GAAGAC	1 cut(s)	530
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	339
BtsCI	GGATG	1 cut(s)	317
BtsIMutI	CAGTG	2 cut(s)	212, 278
Cac8I	GCNNGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	338
Csp6I	GTAC	3 cut(s)	30, 315, 413
CviAII	CATG	3 cut(s)	69, 195, 346
CviQI	GTAC	3 cut(s)	30, 315, 413
DdeI	CTNAG	2 cut(s)	182, 532
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	149, 477
Eco24I	GRGCYC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	497
Eco57I	CTGAAG	2 cut(s)	372, 542
EcoICRI	GAGCTC	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoO109I	RGGNCCY	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	340
EcoRV	GATATC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	149, 477
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	149, 477
FaeI	CATG	3 cut(s)	72, 198, 349
FaiI	YATR	8 cut(s)	70, 84, 196, 347, 401, 425, 456, 541
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FatI	CATG	3 cut(s)	68, 194, 345
Fnu4HI	GCNGC	1 cut(s)	126
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	513
HaeIII	GGCC	1 cut(s)	339
Hin1II	CATG	3 cut(s)	72, 198, 349
HindIII	AAGCTT	1 cut(s)	295
HinfI	GANTC	3 cut(s)	95, 441, 526
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188I	TCNGA	4 cut(s)	335, 440, 464, 522
Hpy188III	TCNNGA	3 cut(s)	135, 201, 239
Hpy8I	GTNNAC	1 cut(s)	415
HpyAV	CCTTC	3 cut(s)	171, 347, 367
HpyCH4III	ACNGT	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	125, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 503
HpyF3I	CTNAG	2 cut(s)	182, 532
Hsp92II	CATG	3 cut(s)	72, 198, 349
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	2 cut(s)	260, 494
LpnPI	CCDG	8 cut(s)	43, 120, 200, 266, 327, 354, 458, 477
Lsp1109I	GCAGC	1 cut(s)	137
MaeI	CTAG	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	512
MalI	GATC	1 cut(s)	365
MbiI	CCGCTC	1 cut(s)	255
MboI	GATC	1 cut(s)	363
MboII	GAAGA	2 cut(s)	50, 535
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	1 cut(s)	499
MlyI	GAGTC	1 cut(s)	520
MmeI	TCCRAC	2 cut(s)	250, 448
MnlI	CCTC	5 cut(s)	65, 115, 329, 331, 404
MseI	TTAA	3 cut(s)	359, 369, 378
MslI	CAYNNNNRTG	2 cut(s)	67, 453
MspA1I	CMGCKG	1 cut(s)	536
MspCI	CTTAAG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	342
Mva1269I	GAATGC	1 cut(s)	17
MvaI	CCWGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	2 cut(s)	88, 503
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	3 cut(s)	72, 198, 349
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	95, 441
PkrI	GCNGC	1 cut(s)	127
PleI	GAGTC	1 cut(s)	520
PpsI	GAGTC	1 cut(s)	520
PshAI	GACNNNNGTC	1 cut(s)	71
Psp124BI	GAGCTC	1 cut(s)	499
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	363
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	3 cut(s)	31, 316, 414
RsaNI	GTAC	3 cut(s)	30, 315, 413
RseI	CAYNNNNRTG	2 cut(s)	67, 453
SacI	GAGCTC	1 cut(s)	499
SaqAI	TTAA	3 cut(s)	359, 369, 378
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	1 cut(s)	338
ScaI	AGTACT	1 cut(s)	31
SchI	GAGTC	1 cut(s)	520
ScrFI	CCNGG	1 cut(s)	342
SduI	GDGCHC	1 cut(s)	499
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	2 cut(s)	67, 453
SmlI	CTYRAG	3 cut(s)	199, 237, 368
SmoI	CTYRAG	3 cut(s)	199, 237, 368
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	114
SstI	GAGCTC	1 cut(s)	499
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	149, 477
TaaI	ACNGT	1 cut(s)	314
TaqI	TCGA	2 cut(s)	26, 93
TatI	WGTACW	2 cut(s)	29, 412
TfiI	GAWTC	2 cut(s)	95, 441
Tru1I	TTAA	3 cut(s)	359, 369, 378
Tru9I	TTAA	3 cut(s)	359, 369, 378
TscAI	CASTG	2 cut(s)	219, 285
TseI	GCWGC	1 cut(s)	125
TspRI	CASTG	2 cut(s)	219, 285
Vha464I	CTTAAG	1 cut(s)	368
XagI	CCTNNNNNAGG	1 cut(s)	371
XspI	CTAG	1 cut(s)	114
ZrmI	AGTACT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.