Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

31546052 .. 31559765

Gene Structure 13714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG282400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCAAAGATTCAAAGACAAAAGGTAGCAGCAAATACACACAGTGGAGAAGAAAAACAACAGGTAGCAACCCGTGCAAAAGTAAATTCACCAGCACTCAAAGCAGTGGTGTCTCCCTTCAAAAGGAAGAAAGGTTGTTGTCTCGTCTTTGCTCTACTCGATCACTCACTCAAGCTATCACTGTGTCAATTCAGCTCAGTGGCAGATATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAACCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAAACTATTGCAACAAAAGTTGGATTGCCACTAGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCAGCCCTGTCATGGCTGAAGGGTTAAAGGGGGAAACAAGCTTGCCGGGAGAGAACATTTCTTTGTCTGCATCAGGGAAAAACTGGTGCATACAGCATGCTATAAATGCCAAGAGCAGTTGTTATTCTCCATCACTTCCATATAGTCTAAAGCAACATGTGTTATCTTCCCCCCCCCAGAGCTTACGTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

200

Amino Acids

21.83

Weight (kDa)

9.78

Isoelectric Point (pI)

55.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	84 - 147	1.6e-11	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	306
AciI	CCGC	2 cut(s)	269, 409
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	447
AdeI	CACNNNGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	391
AfiI	CCNNNNNNNGG	2 cut(s)	123, 421
AflIII	ACRYGT	2 cut(s)	565, 595
AgsI	TTSAA	4 cut(s)	14, 121, 287, 364
AhlI	ACTAGT	1 cut(s)	355
AluBI	AGCT	8 cut(s)	175, 195, 221, 238, 372, 383, 450, 591
AluI	AGCT	8 cut(s)	175, 195, 221, 238, 372, 383, 450, 591
Alw21I	GWGCWC	1 cut(s)	300
Alw26I	GTCTC	2 cut(s)	117, 146
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	1 cut(s)	312
ApeKI	GCWGC	2 cut(s)	29, 411
ApoI	RAATTY	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	81
AvaII	GGWCC	1 cut(s)	272
BalI	TGGCCA	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	41, 423
BccI	CCATC	2 cut(s)	304, 547
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	2 cut(s)	117, 146
BcuI	ACTAGT	1 cut(s)	355
BfaI	CTAG	1 cut(s)	356
BisI	GCNGC	2 cut(s)	30, 412
BlsI	GCNGC	2 cut(s)	31, 413
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	488
BpuEI	CTTGAG	2 cut(s)	155, 224
BpuMI	CCSGG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	596
BsaJI	CCNNGG	1 cut(s)	291
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 421
Bse1I	ACTGG	1 cut(s)	497
BseAI	TCCGGA	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	291
BseGI	GGATG	2 cut(s)	315, 392
BseLI	CCNNNNNNNGG	2 cut(s)	123, 421
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	41, 423
BshFI	GGCC	1 cut(s)	314
BsiHKAI	GWGCWC	1 cut(s)	300
BsiSI	CCGG	2 cut(s)	307, 455
BslI	CCNNNNNNNGG	2 cut(s)	123, 421
BsmAI	GTCTC	2 cut(s)	117, 146
BsnI	GGCC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	300
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	2 cut(s)	269, 409
BspANI	GGCC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	209
BspEI	TCCGGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	291
BssMI	GATC	1 cut(s)	160
Bst4CI	ACNGT	4 cut(s)	44, 183, 255, 389
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstBAI	YACGTR	1 cut(s)	596
BstC8I	GCNNGC	2 cut(s)	452, 507
BstDEI	CTNAG	1 cut(s)	196
BstENI	CCTNNNNNAGG	1 cut(s)	121
BstF5I	GGATG	2 cut(s)	315, 392
BstKTI	GATC	1 cut(s)	163
BstMAI	GTCTC	2 cut(s)	117, 146
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 101, 515
BstNSI	RCATGY	2 cut(s)	509, 569
BstSCI	CCNGG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	41, 423
BsuRI	GGCC	1 cut(s)	314
BtsCI	GGATG	2 cut(s)	315, 392
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	4 cut(s)	49, 111, 179, 204
Cac8I	GCNNGC	2 cut(s)	452, 507
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	390
CviAII	CATG	3 cut(s)	421, 506, 566
CviQI	GTAC	1 cut(s)	390
DdeI	CTNAG	1 cut(s)	196
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
DraIII	CACNNNGTG	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	447
EcoNI	CCTNNNNNAGG	1 cut(s)	121
FaeI	CATG	3 cut(s)	424, 509, 569
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FatI	CATG	3 cut(s)	420, 505, 565
FauI	CCCGC	1 cut(s)	262
Fnu4HI	GCNGC	2 cut(s)	30, 412
FokI	GGATG	2 cut(s)	322, 379
Fsp4HI	GCNGC	2 cut(s)	30, 412
FspBI	CTAG	1 cut(s)	356
GluI	GCNGC	2 cut(s)	30, 412
HaeIII	GGCC	1 cut(s)	314
HapII	CCGG	2 cut(s)	307, 455
Hin1II	CATG	3 cut(s)	424, 509, 569
HindIII	AAGCTT	2 cut(s)	370, 448
HinfI	GANTC	3 cut(s)	10, 212, 287
HpaII	CCGG	2 cut(s)	307, 455
HphI	GGTGA	1 cut(s)	81
Hpy188I	TCNGA	2 cut(s)	276, 292
Hpy188III	TCNNGA	2 cut(s)	241, 307
HpyAV	CCTTC	2 cut(s)	127, 422
HpyCH4III	ACNGT	4 cut(s)	44, 183, 255, 389
HpyCH4IV	ACGT	1 cut(s)	595
HpyCH4V	TGCA	4 cut(s)	77, 335, 479, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 101, 515
HpyF3I	CTNAG	1 cut(s)	196
HpySE526I	ACGT	1 cut(s)	595
Hsp92II	CATG	3 cut(s)	424, 509, 569
Kpn2I	TCCGGA	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	8 cut(s)	47, 105, 320, 429, 468, 468, 478, 599
Lsp1109I	GCAGC	2 cut(s)	41, 423
LweI	GCATC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	356
MaeII	ACGT	1 cut(s)	595
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	3 cut(s)	62, 139, 567
MhlI	GDGCHC	1 cut(s)	300
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	85, 188
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	2 cut(s)	286, 406
Mox20I	TGGCCA	1 cut(s)	314
MroI	TCCGGA	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	1 cut(s)	434
Msp20I	TGGCCA	1 cut(s)	314
MspI	CCGG	2 cut(s)	307, 455
MspR9I	CCNGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	74, 101, 515
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	160
NlaIII	CATG	3 cut(s)	424, 509, 569
NlaIV	GGNNCC	1 cut(s)	273
NspI	RCATGY	2 cut(s)	509, 569
PaeI	GCATGC	1 cut(s)	509
PciI	ACATGT	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	10, 212, 287
PkrI	GCNGC	2 cut(s)	31, 413
Ppu21I	YACGTR	1 cut(s)	596
PscI	ACATGT	1 cut(s)	565
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	1 cut(s)	391
RsaNI	GTAC	1 cut(s)	390
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	2 cut(s)	30, 412
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	272
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	1 cut(s)	300
SfaNI	GCATC	1 cut(s)	488
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	170, 239
SmoI	CTYRAG	2 cut(s)	170, 239
SpeI	ACTAGT	1 cut(s)	355
SphI	GCATGC	1 cut(s)	509
Sse9I	AATT	2 cut(s)	85, 188
SsiI	CCGC	2 cut(s)	269, 409
SspMI	CTAG	1 cut(s)	356
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	4 cut(s)	44, 183, 255, 389
TaiI	ACGT	1 cut(s)	598
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	85, 188
TfiI	GAWTC	3 cut(s)	10, 212, 287
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	4 cut(s)	49, 111, 186, 204
TseI	GCWGC	2 cut(s)	29, 411
TspRI	CASTG	4 cut(s)	49, 111, 186, 204
VpaK11BI	GGWCC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	121
XapI	RAATTY	1 cut(s)	85
XceI	RCATGY	2 cut(s)	509, 569
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.