Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

29334375 .. 29335180

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00352330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTTCTGCATTTTTATGCCGTCAGACAGATCTTCTAATTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTCGACTGGCAGGAAATCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCAGTTTGCAGCAAATCTTCAGGAGCTACGATGGTGACTGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

171

Amino Acids

18.56

Weight (kDa)

9.05

Isoelectric Point (pI)

15.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	1 - 157	8.6e-41	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AccII	CGCG	2 cut(s)	102, 436
AciI	CCGC	3 cut(s)	100, 102, 434
AclWI	GGATC	3 cut(s)	124, 425, 458
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	2 cut(s)	138, 471
AfaI	GTAC	2 cut(s)	82, 180
AfiI	CCNNNNNNNGG	2 cut(s)	112, 139
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	5 cut(s)	63, 74, 152, 461, 494
AluI	AGCT	5 cut(s)	63, 74, 152, 461, 494
Alw21I	GWGCWC	1 cut(s)	325
AlwI	GGATC	3 cut(s)	124, 425, 458
AoxI	GGCC	2 cut(s)	3, 103
ApeKI	GCWGC	3 cut(s)	272, 275, 477
ApoI	RAATTY	1 cut(s)	340
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	5
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	3 cut(s)	284, 287, 489
BccI	CCATC	3 cut(s)	376, 493, 503
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	1 cut(s)	108
BfmI	CTRYAG	1 cut(s)	165
BglII	AGATCT	1 cut(s)	259
BisI	GCNGC	4 cut(s)	103, 273, 276, 478
BlsI	GCNGC	4 cut(s)	104, 274, 277, 479
Bme1390I	CCNGG	1 cut(s)	108
BmgT120I	GGNCC	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	100, 106
Bsc4I	CCNNNNNNNGG	2 cut(s)	112, 139
Bse1I	ACTGG	4 cut(s)	51, 289, 366, 470
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	2 cut(s)	100, 106
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	2 cut(s)	112, 139
BseMII	CTCAG	1 cut(s)	339
BseNI	ACTGG	4 cut(s)	51, 289, 366, 470
BseXI	GCAGC	3 cut(s)	284, 287, 489
Bsh1236I	CGCG	2 cut(s)	102, 436
BshFI	GGCC	2 cut(s)	5, 105
BsiHKAI	GWGCWC	1 cut(s)	325
BslI	CCNNNNNNNGG	2 cut(s)	112, 139
BsnI	GGCC	2 cut(s)	5, 105
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp1407I	TGTACA	1 cut(s)	178
Bsp143I	GATC	4 cut(s)	129, 259, 430, 450
BspACI	CCGC	3 cut(s)	100, 102, 434
BspANI	GGCC	2 cut(s)	5, 105
BspCNI	CTCAG	1 cut(s)	340
BspFNI	CGCG	2 cut(s)	102, 436
BspPI	GGATC	3 cut(s)	124, 425, 458
BsrGI	TGTACA	1 cut(s)	178
BsrI	ACTGG	4 cut(s)	51, 289, 366, 470
BssECI	CCNNGG	2 cut(s)	100, 106
BssMI	GATC	4 cut(s)	129, 259, 430, 450
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	2 cut(s)	80, 195
BstAUI	TGTACA	1 cut(s)	178
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	100
BstENI	CCTNNNNNAGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	2 cut(s)	102, 436
BstKTI	GATC	4 cut(s)	132, 262, 433, 453
BstMBI	GATC	4 cut(s)	129, 259, 430, 450
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	2 cut(s)	102, 436
BstV1I	GCAGC	3 cut(s)	284, 287, 489
BstX2I	RGATCY	2 cut(s)	129, 259
BstYI	RGATCY	2 cut(s)	129, 259
BsuRI	GGCC	2 cut(s)	5, 105
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	2 cut(s)	44, 200
Cfr13I	GGNCC	1 cut(s)	104
Cfr42I	CCGCGG	1 cut(s)	103
Csp6I	GTAC	2 cut(s)	81, 179
CviAII	CATG	2 cut(s)	112, 334
CviJI	RGCY	9 cut(s)	5, 63, 74, 105, 116, 152, 278, 461, 494
CviKI_1	RGCY	9 cut(s)	5, 63, 74, 105, 116, 152, 278, 461, 494
CviQI	GTAC	2 cut(s)	81, 179
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	4 cut(s)	131, 261, 432, 452
DpnII	GATC	4 cut(s)	129, 259, 430, 450
EaeI	YGGCCR	1 cut(s)	3
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	2 cut(s)	138, 471
EcoNI	CCTNNNNNAGG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	2 cut(s)	115, 337
FaiI	YATR	9 cut(s)	14, 113, 156, 167, 191, 247, 335, 404, 414
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	2 cut(s)	111, 333
Fnu4HI	GCNGC	4 cut(s)	103, 273, 276, 478
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	4 cut(s)	103, 273, 276, 478
GluI	GCNGC	4 cut(s)	103, 273, 276, 478
HaeIII	GGCC	2 cut(s)	5, 105
Hin1II	CATG	2 cut(s)	115, 337
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	2 cut(s)	185, 355
HphI	GGTGA	1 cut(s)	514
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	3 cut(s)	231, 255, 455
Hpy188III	TCNNGA	1 cut(s)	489
Hpy8I	GTNNAC	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	113, 133, 301, 336
HpyCH4III	ACNGT	2 cut(s)	80, 195
HpyCH4V	TGCA	4 cut(s)	218, 239, 272, 477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	1 cut(s)	348
Hsp92II	CATG	2 cut(s)	115, 337
KspI	CCGCGG	1 cut(s)	103
Kzo9I	GATC	4 cut(s)	129, 259, 430, 450
LmnI	GCTCC	2 cut(s)	328, 491
LpnPI	CCDG	8 cut(s)	32, 93, 120, 270, 347, 351, 474, 483
Lsp1109I	GCAGC	3 cut(s)	284, 287, 489
MaeIII	GTNAC	2 cut(s)	169, 502
MalI	GATC	4 cut(s)	131, 261, 432, 452
MboI	GATC	4 cut(s)	129, 259, 430, 450
MboII	GAAGA	4 cut(s)	212, 254, 364, 477
MflI	RGATCY	2 cut(s)	129, 259
MhlI	GDGCHC	1 cut(s)	325
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	267, 314, 340, 423, 439, 463
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	3 cut(s)	97, 170, 387
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	125, 144, 303, 422
MslI	CAYNNNNRTG	1 cut(s)	244
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	2 cut(s)	102, 436
MwoI	GCNNNNNNNGC	1 cut(s)	108
NdeII	GATC	4 cut(s)	129, 259, 430, 450
NlaIII	CATG	2 cut(s)	115, 337
NmuCI	GTSAC	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	185, 355
PkrI	GCNGC	4 cut(s)	104, 274, 277, 479
PsiI	TTATAA	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	104
PsuI	RGATCY	2 cut(s)	129, 259
RsaI	GTAC	2 cut(s)	82, 180
RsaNI	GTAC	2 cut(s)	81, 179
RseI	CAYNNNNRTG	1 cut(s)	244
SacII	CCGCGG	1 cut(s)	103
SaqAI	TTAA	4 cut(s)	125, 144, 303, 422
SatI	GCNGC	4 cut(s)	103, 273, 276, 478
Sau3AI	GATC	4 cut(s)	129, 259, 430, 450
Sau96I	GGNCC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	325
SetI	ASST	7 cut(s)	65, 76, 144, 154, 162, 463, 496
SfcI	CTRYAG	1 cut(s)	165
Sfr303I	CCGCGG	1 cut(s)	103
SgrBI	CCGCGG	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	244
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	6 cut(s)	267, 314, 340, 423, 439, 463
SsiI	CCGC	3 cut(s)	100, 102, 434
SspI	AATATT	1 cut(s)	301
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	80, 195
TaqI	TCGA	1 cut(s)	358
TasI	AATT	6 cut(s)	267, 314, 340, 423, 439, 463
TatI	WGTACW	1 cut(s)	178
TauI	GCSGC	1 cut(s)	105
TfiI	GAWTC	2 cut(s)	185, 355
Tru1I	TTAA	4 cut(s)	125, 144, 303, 422
Tru9I	TTAA	4 cut(s)	125, 144, 303, 422
TscAI	CASTG	2 cut(s)	51, 200
TseFI	GTSAC	1 cut(s)	502
TseI	GCWGC	3 cut(s)	272, 275, 477
Tsp45I	GTSAC	1 cut(s)	502
TspRI	CASTG	2 cut(s)	51, 200
XagI	CCTNNNNNAGG	1 cut(s)	137
XapI	RAATTY	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.