Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

36780234 .. 36785244

Gene Structure 5011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1236400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATTCGTCAGTGGTGCTATATAACCAGCTCAAGGCAGCAGAACCATTTTTCTTGCTAGCCGGTCCCAATGTGATCGAATCTGAGGAGCACATTTTCCGAATGGCCAAGCACATCAAGAGTGTTGCAACGAAAGTTGGATTGCCACTGGTTTTCAAGTCAAGCTTTGACAAGGCCAACCGTACGTCCTCAAAATCATTCCGGGGTCCTGGCTTGGAGGAAGGCTTAAAGATCCTTGAGAAGGTCAAAACAGCATTTGACCTCCCTATCATTACAGATGTACATGAAGCTAGCCAGTGTGAAGCAGTTGGTAGAGTTGCAGATATTATTCAGATTCCTGCATTTTTATGCCGCCAGACAGATCTTCTAGTAGCAGCAGCCAAGACTGGAAAAATTATCAATATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTCATGGTAAACTCGGCTGAGAAGGTTAGACTGGCTGGAAACCCAAATGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATAATGATTTAATTGTTGATCCCCGCAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTCGTTGCTGACGTCACACATGCATTGCAACAGCCTGCTGGGAGAAAGGTGAGAAACGGTGGTCTTCGTGAATTAATACCATGCATTGCAAGAACAGCAGTTGCTGTTGGAGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACTCAGTGGCCCTTGCGCCAGTTGGAGGAACTGCTGGTAGAGCTCATAGCAATTGCTAGGGTAAGCAAAGGGAGGCAACGTTTCAGCATTGATCTCACACCCTATCGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

286

Amino Acids

31.31

Weight (kDa)

8.5

Isoelectric Point (pI)

28.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	15 - 260	3.1e-67	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	737
AciI	CCGC	2 cut(s)	352, 538
AclI	AACGTT	1 cut(s)	823
AclWI	GGATC	4 cut(s)	226, 527, 560, 710
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	1 cut(s)	693
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	3 cut(s)	184, 282, 708
AfiI	CCNNNNNNNGG	5 cut(s)	34, 241, 544, 737, 769
AgsI	TTSAA	1 cut(s)	157
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	5 cut(s)	31, 165, 290, 563, 787
AluI	AGCT	5 cut(s)	31, 165, 290, 563, 787
Alw21I	GWGCWC	3 cut(s)	93, 427, 789
AlwI	GGATC	4 cut(s)	226, 527, 560, 710
AlwNI	CAGNNNCTG	1 cut(s)	677
AoxI	GGCC	4 cut(s)	105, 174, 412, 752
ApeKI	GCWGC	3 cut(s)	38, 374, 377
ApoI	RAATTY	1 cut(s)	693
AseI	ATTAAT	1 cut(s)	647
AspLEI	GCGC	2 cut(s)	730, 762
AspS9I	GGNCC	5 cut(s)	65, 206, 412, 740, 753
AsuC2I	CCSGG	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	634
AsuNHI	GCTAGC	2 cut(s)	58, 290
AvaII	GGWCC	3 cut(s)	65, 206, 740
BalI	TGGCCA	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	3 cut(s)	93, 427, 789
BbvI	GCAGC	3 cut(s)	50, 386, 389
BccI	CCATC	3 cut(s)	478, 683, 731
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	4 cut(s)	59, 291, 368, 801
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	4 cut(s)	39, 352, 375, 378
BlsI	GCNGC	4 cut(s)	40, 353, 376, 379
Bme1390I	CCNGG	2 cut(s)	203, 210
Bme18I	GGWCC	3 cut(s)	65, 206, 740
BmgT120I	GGNCC	5 cut(s)	65, 206, 412, 740, 753
BmiI	GGNNCC	2 cut(s)	67, 207
BmrFI	CCNGG	2 cut(s)	203, 210
BmtI	GCTAGC	2 cut(s)	62, 294
BpiI	GAAGAC	1 cut(s)	629
BpuEI	CTTGAG	2 cut(s)	17, 257
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	1 cut(s)	202
BsaXI	ACNNNNNCTCC	2 cut(s)	808, 838
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 241, 544, 737, 769
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	7 cut(s)	153, 295, 391, 415, 468, 731, 763
Bse3DI	GCAATG	2 cut(s)	596, 657
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	202
BseGI	GGATG	1 cut(s)	694
BseLI	CCNNNNNNNGG	5 cut(s)	34, 241, 544, 737, 769
BseMI	GCAATG	2 cut(s)	596, 657
BseMII	CTCAG	3 cut(s)	75, 441, 761
BseNI	ACTGG	7 cut(s)	153, 295, 391, 415, 468, 731, 763
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	3 cut(s)	50, 386, 389
BseYI	CCCAGC	1 cut(s)	611
BshFI	GGCC	4 cut(s)	107, 176, 414, 754
BsiHKAI	GWGCWC	3 cut(s)	93, 427, 789
BsiSI	CCGG	2 cut(s)	63, 202
BsiWI	CGTACG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	5 cut(s)	34, 241, 544, 737, 769
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	4 cut(s)	107, 176, 414, 754
Bsp1286I	GDGCHC	3 cut(s)	93, 427, 789
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
BspACI	CCGC	2 cut(s)	352, 538
BspANI	GGCC	4 cut(s)	107, 176, 414, 754
BspCNI	CTCAG	3 cut(s)	76, 442, 760
BspLI	GGNNCC	2 cut(s)	67, 207
BspOI	GCTAGC	2 cut(s)	62, 294
BspPI	GGATC	4 cut(s)	226, 527, 560, 710
BsrDI	GCAATG	2 cut(s)	596, 657
BsrFI	RCCGGY	1 cut(s)	62
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	7 cut(s)	153, 295, 391, 415, 468, 731, 763
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	202
BssMI	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
BssNI	GRCGYC	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	182, 632
BstACI	GRCGYC	1 cut(s)	585
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	3 cut(s)	60, 292, 609
BstDEI	CTNAG	3 cut(s)	84, 450, 747
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	1 cut(s)	694
BstHHI	GCGC	2 cut(s)	730, 762
BstKTI	GATC	7 cut(s)	78, 234, 364, 535, 555, 718, 838
BstMBI	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	668, 784
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	201, 208
BstV1I	GCAGC	3 cut(s)	50, 386, 389
BstV2I	GAAGAC	1 cut(s)	629
BstX2I	RGATCY	2 cut(s)	231, 361
BstXI	CCANNNNNNTGG	1 cut(s)	750
BstYI	RGATCY	2 cut(s)	231, 361
BsuRI	GGCC	4 cut(s)	107, 176, 414, 754
BtsCI	GGATG	1 cut(s)	694
BtsIMutI	CAGTG	4 cut(s)	18, 146, 302, 755
Cac8I	GCNNGC	3 cut(s)	60, 292, 609
CaiI	CAGNNNCTG	1 cut(s)	677
CfoI	GCGC	2 cut(s)	730, 762
Cfr10I	RCCGGY	1 cut(s)	62
Cfr13I	GGNCC	5 cut(s)	65, 206, 412, 740, 753
Csp6I	GTAC	3 cut(s)	183, 281, 707
CviAII	CATG	6 cut(s)	284, 436, 593, 654, 700, 710
CviQI	GTAC	3 cut(s)	183, 281, 707
DdeI	CTNAG	3 cut(s)	84, 450, 747
DpnI	GATC	7 cut(s)	77, 233, 363, 534, 554, 717, 837
DpnII	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
EaeI	YGGCCR	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	787
Eco24I	GRGCYC	1 cut(s)	789
Eco47I	GGWCC	3 cut(s)	65, 206, 740
Eco53kI	GAGCTC	1 cut(s)	787
EcoICRI	GAGCTC	1 cut(s)	787
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	208
EcoT22I	ATGCAT	2 cut(s)	598, 659
EcoT38I	GRGCYC	1 cut(s)	789
FaeI	CATG	6 cut(s)	287, 439, 596, 657, 703, 713
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	6 cut(s)	283, 435, 592, 653, 699, 709
FauI	CCCGC	1 cut(s)	545
Fnu4HI	GCNGC	4 cut(s)	39, 352, 375, 378
FokI	GGATG	1 cut(s)	701
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	4 cut(s)	39, 352, 375, 378
FspBI	CTAG	4 cut(s)	59, 291, 368, 801
GlaI	GCGC	2 cut(s)	729, 761
GluI	GCNGC	4 cut(s)	39, 352, 375, 378
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	4 cut(s)	107, 176, 414, 754
HapII	CCGG	2 cut(s)	63, 202
HhaI	GCGC	2 cut(s)	730, 762
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	6 cut(s)	287, 439, 596, 657, 703, 713
Hin6I	GCGC	2 cut(s)	728, 760
HinP1I	GCGC	2 cut(s)	728, 760
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	3 cut(s)	5, 80, 334
HpaII	CCGG	2 cut(s)	63, 202
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	1 cut(s)	442
Hpy188I	TCNGA	4 cut(s)	85, 101, 333, 557
Hpy188III	TCNNGA	2 cut(s)	118, 641
Hpy8I	GTNNAC	1 cut(s)	442
HpyAV	CCTTC	6 cut(s)	215, 235, 403, 438, 448, 729
HpyCH4III	ACNGT	2 cut(s)	182, 632
HpyCH4IV	ACGT	3 cut(s)	185, 585, 823
HpyCH4V	TGCA	7 cut(s)	128, 320, 341, 596, 601, 657, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	668, 784
HpyF3I	CTNAG	3 cut(s)	84, 450, 747
HpySE526I	ACGT	3 cut(s)	185, 585, 823
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	6 cut(s)	287, 439, 596, 657, 703, 713
HspAI	GCGC	2 cut(s)	728, 760
Kzo9I	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
LmnI	GCTCC	2 cut(s)	88, 430
Lsp1109I	GCAGC	3 cut(s)	50, 386, 389
MaeI	CTAG	4 cut(s)	59, 291, 368, 801
MaeII	ACGT	3 cut(s)	185, 585, 823
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	7 cut(s)	77, 233, 363, 534, 554, 717, 837
MboI	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
MboII	GAAGA	2 cut(s)	356, 629
MfeI	CAATTG	1 cut(s)	795
MflI	RGATCY	2 cut(s)	231, 361
MhlI	GDGCHC	3 cut(s)	93, 427, 789
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	8 cut(s)	393, 525, 541, 565, 644, 693, 795, 853
MluNI	TGGCCA	1 cut(s)	107
MmeI	TCCRAC	4 cut(s)	118, 661, 747, 767
MnlI	CCTC	8 cut(s)	79, 199, 211, 272, 489, 697, 763, 810
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	2 cut(s)	598, 659
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	4 cut(s)	227, 405, 524, 647
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	107
MspI	CCGG	2 cut(s)	63, 202
MspR9I	CCNGG	2 cut(s)	203, 210
MunI	CAATTG	1 cut(s)	795
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	668, 784
NciI	CCSGG	1 cut(s)	203
NdeII	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
NheI	GCTAGC	2 cut(s)	58, 290
NlaIII	CATG	6 cut(s)	287, 439, 596, 657, 703, 713
NlaIV	GGNNCC	2 cut(s)	67, 207
NmeAIII	GCCGAG	1 cut(s)	425
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	2 cut(s)	598, 659
NspI	RCATGY	1 cut(s)	596
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PfeI	GAWTC	3 cut(s)	5, 80, 334
Pfl23II	CGTACG	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	737
PkrI	GCNGC	4 cut(s)	40, 353, 376, 379
PpuMI	RGGWCCY	1 cut(s)	206
PshBI	ATTAAT	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	789
Psp1406I	AACGTT	1 cut(s)	823
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	208
PspLI	CGTACG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	67, 207
PspPI	GGNCC	5 cut(s)	65, 206, 412, 740, 753
PspPPI	RGGWCCY	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	677
PsuI	RGATCY	2 cut(s)	231, 361
RsaI	GTAC	3 cut(s)	184, 282, 708
RsaNI	GTAC	3 cut(s)	183, 281, 707
RseI	CAYNNNNRTG	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	789
SaqAI	TTAA	4 cut(s)	227, 405, 524, 647
SatI	GCNGC	4 cut(s)	39, 352, 375, 378
Sau3AI	GATC	7 cut(s)	75, 231, 361, 532, 552, 715, 835
Sau96I	GGNCC	5 cut(s)	65, 206, 412, 740, 753
ScrFI	CCNGG	2 cut(s)	203, 210
SduI	GDGCHC	3 cut(s)	93, 427, 789
SinI	GGWCC	3 cut(s)	65, 206, 740
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	32, 236
SmoI	CTYRAG	2 cut(s)	32, 236
Sse9I	AATT	8 cut(s)	393, 525, 541, 565, 644, 693, 795, 853
SsiI	CCGC	2 cut(s)	352, 538
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	4 cut(s)	59, 291, 368, 801
SstI	GAGCTC	1 cut(s)	789
StyD4I	CCNGG	2 cut(s)	201, 208
TaaI	ACNGT	2 cut(s)	182, 632
TaiI	ACGT	3 cut(s)	188, 588, 826
TaqI	TCGA	1 cut(s)	78
TasI	AATT	8 cut(s)	393, 525, 541, 565, 644, 693, 795, 853
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	5, 80, 334
Tru1I	TTAA	4 cut(s)	227, 405, 524, 647
Tru9I	TTAA	4 cut(s)	227, 405, 524, 647
TscAI	CASTG	4 cut(s)	18, 153, 302, 755
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	3 cut(s)	38, 374, 377
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	2 cut(s)	300, 688
TspRI	CASTG	4 cut(s)	18, 153, 302, 755
Van91I	CCANNNNNTGG	1 cut(s)	737
VpaK11BI	GGWCC	3 cut(s)	65, 206, 740
VspI	ATTAAT	1 cut(s)	647
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	1 cut(s)	693
XceI	RCATGY	1 cut(s)	596
XspI	CTAG	4 cut(s)	59, 291, 368, 801
ZraI	GACGTC	1 cut(s)	586
Zsp2I	ATGCAT	2 cut(s)	598, 659

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.