Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

64537080 .. 64540229

Gene Structure 3150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG377700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGAAGCTGGTGTTTCTATATTCATGAGCAAACTGATTCTTCGTCCTCGACAGATAATTGAAGGGTGTGTTAATGGTTACCTGAAATTCGTTGAATATGAGAGGACCCCATCGAAAATTCTCACACACCAAGCTTCAGATGATCCATTGTACAAGGGCTATAGATCAGTGATGGAGTCTAAAAGCCAAGAAGAAACTCTGTTGGGGTTTGCAATCTGGGAACCACCTCATGGCCAATATAGAATGTTGAATTATCCTTGGAAAAACTATGTCAAAGTGAGCAGTGCATTGAGGCATTGTGCATTCATGGTCATGGCACTACATGGATGTCTTCTTTCTGAAATACAGGTGGAAGAATCAAATTGGAAGAGCAGAAAGGATGGAAATGCAGCAATACTGTGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005216 GO:0005253 GO:0005310 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006835 GO:0008150 GO:0008509 GO:0008514 GO:0009705 GO:0015075 GO:0015103 GO:0015140 GO:0015267 GO:0015318 GO:0015556 GO:0015698 GO:0015711 GO:0015740 GO:0015743 GO:0015849 GO:0016020 GO:0022803 GO:0022838 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071423 GO:0071702 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALMT

Protein Analysis

135

Amino Acids

15.51

Weight (kDa)

8.34

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	18 - 120	2.3e-42	Aluminium activated malate transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	230
AclWI	GGATC	1 cut(s)	137
AcoI	YGGCCR	1 cut(s)	232
AcsI	RAATTY	2 cut(s)	86, 117
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	3 cut(s)	62, 95, 250
AluBI	AGCT	2 cut(s)	8, 134
AluI	AGCT	2 cut(s)	8, 134
Alw21I	GWGCWC	1 cut(s)	404
Alw44I	GTGCAC	1 cut(s)	400
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	232
ApaLI	GTGCAC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	389
ApoI	RAATTY	2 cut(s)	86, 117
AspS9I	GGNCC	1 cut(s)	105
AvaII	GGWCC	1 cut(s)	105
BaeGI	GKGCMC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	234
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	404
BbvI	GCAGC	1 cut(s)	401
BccI	CCATC	3 cut(s)	118, 166, 374
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	107, 222
BpiI	GAAGAC	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	332, 385
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	404
BseXI	GCAGC	1 cut(s)	401
BshFI	GGCC	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	230
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	234
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp1407I	TGTACA	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	142, 164
BspANI	GGCC	1 cut(s)	234
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	107, 222
BspPI	GGATC	1 cut(s)	137
BspQI	GCTCTTC	1 cut(s)	362
BsrGI	TGTACA	1 cut(s)	150
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	2 cut(s)	142, 164
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	399
Bst6I	CTCTTC	1 cut(s)	362
BstAUI	TGTACA	1 cut(s)	150
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	2 cut(s)	332, 385
BstKTI	GATC	2 cut(s)	145, 167
BstMBI	GATC	2 cut(s)	142, 164
BstPI	GGTNACC	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	160
BstSLI	GKGCMC	1 cut(s)	404
BstV1I	GCAGC	1 cut(s)	401
BstV2I	GAAGAC	1 cut(s)	323
BsuRI	GGCC	1 cut(s)	234
BtsCI	GGATG	2 cut(s)	332, 385
BtsI	GCAGTG	1 cut(s)	289
BtsIMutI	CAGTG	2 cut(s)	174, 289
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	6 cut(s)	25, 230, 307, 313, 323, 405
CviJI	RGCY	5 cut(s)	8, 134, 159, 186, 234
CviKI_1	RGCY	5 cut(s)	8, 134, 159, 186, 234
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	2 cut(s)	144, 166
DpnII	GATC	2 cut(s)	142, 164
EaeI	YGGCCR	1 cut(s)	232
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	120
Eco91I	GGTNACC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	105
EcoO65I	GGTNACC	1 cut(s)	77
EcoT14I	CCWWGG	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	6 cut(s)	28, 233, 310, 316, 326, 408
FatI	CATG	6 cut(s)	24, 229, 306, 312, 322, 404
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	2 cut(s)	339, 392
Fsp4HI	GCNGC	1 cut(s)	390
GluI	GCNGC	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	234
Hin1II	CATG	6 cut(s)	28, 233, 310, 316, 326, 408
HindIII	AAGCTT	1 cut(s)	132
HinfI	GANTC	3 cut(s)	37, 176, 356
Hpy166II	GTNNAC	1 cut(s)	402
Hpy188I	TCNGA	2 cut(s)	139, 340
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	402
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	1 cut(s)	399
HpyCH4V	TGCA	5 cut(s)	212, 287, 302, 389, 402
Hsp92II	CATG	6 cut(s)	28, 233, 310, 316, 326, 408
Kzo9I	GATC	2 cut(s)	142, 164
LguI	GCTCTTC	1 cut(s)	362
LpnPI	CCDG	3 cut(s)	95, 202, 332
Lsp1109I	GCAGC	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	2 cut(s)	144, 166
MboI	GATC	2 cut(s)	142, 164
MboII	GAAGA	5 cut(s)	32, 203, 323, 365, 379
MhlI	GDGCHC	1 cut(s)	404
MlsI	TGGCCA	1 cut(s)	234
MluCI	AATT	5 cut(s)	57, 86, 117, 250, 361
MluNI	TGGCCA	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	185
MnlI	CCTC	4 cut(s)	57, 96, 237, 285
Mox20I	TGGCCA	1 cut(s)	234
MscI	TGGCCA	1 cut(s)	234
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	311
Msp20I	TGGCCA	1 cut(s)	234
Mva1269I	GAATGC	1 cut(s)	302
NdeII	GATC	2 cut(s)	142, 164
NlaIII	CATG	6 cut(s)	28, 233, 310, 316, 326, 408
NlaIV	GGNNCC	2 cut(s)	107, 222
PagI	TCATGA	1 cut(s)	24
PciSI	GCTCTTC	1 cut(s)	362
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	2 cut(s)	37, 356
PflMI	CCANNNNNTGG	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	391
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	105
Psp5II	RGGWCCY	1 cut(s)	105
PspEI	GGTNACC	1 cut(s)	77
PspN4I	GGNNCC	2 cut(s)	107, 222
PspPI	GGNCC	1 cut(s)	105
PspPPI	RGGWCCY	1 cut(s)	105
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	311
SapI	GCTCTTC	1 cut(s)	362
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	1 cut(s)	390
Sau3AI	GATC	2 cut(s)	142, 164
Sau96I	GGNCC	1 cut(s)	105
SchI	GAGTC	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	5 cut(s)	10, 84, 136, 229, 351
SfcI	CTRYAG	1 cut(s)	160
SinI	GGWCC	1 cut(s)	105
SmiMI	CAYNNNNRTG	1 cut(s)	311
Sse9I	AATT	5 cut(s)	57, 86, 117, 250, 361
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	49, 113
TasI	AATT	5 cut(s)	57, 86, 117, 250, 361
TatI	WGTACW	1 cut(s)	150
TfiI	GAWTC	2 cut(s)	37, 356
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	2 cut(s)	174, 289
TseI	GCWGC	1 cut(s)	389
TspDTI	ATGAA	2 cut(s)	13, 295
TspRI	CASTG	2 cut(s)	174, 289
Van91I	CCANNNNNTGG	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	2 cut(s)	86, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.