Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00322

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

29078 .. 34300

Gene Structure 5223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G008480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGTAGGATTTCTTAGGTATCTCTCAATGCTCAAGAGACTTGCCACTGTATTCAAGAATAAGGTGTGGAGAAAGAAGCTAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGCCGACTGCCGACGCCGCTTCGTTCGGTCCAAAGTTTGACGACAATCACACTTTCTACTGGGTAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

104

Amino Acids

11.85

Weight (kDa)

10.33

Isoelectric Point (pI)

15.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	23 - 85	1.4e-13	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	1 cut(s)	175
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	258
AfaI	GTAC	2 cut(s)	133, 231
AfiI	CCNNNNNNNGG	2 cut(s)	163, 190
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	55, 106
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	5 cut(s)	79, 114, 125, 203, 312
AluI	AGCT	5 cut(s)	79, 114, 125, 203, 312
Alw26I	GTCTC	1 cut(s)	31
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	154
ApaI	GGGCCC	1 cut(s)	158
AspS9I	GGNCC	3 cut(s)	154, 155, 272
AsuC2I	CCSGG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	158
BanII	GRGCYC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	233
BciT130I	CCWGG	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	185
BisI	GCNGC	1 cut(s)	261
BlsI	GCNGC	1 cut(s)	262
Bme1390I	CCNGG	2 cut(s)	152, 159
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	3 cut(s)	154, 155, 272
BmiI	GGNNCC	2 cut(s)	155, 156
BmrFI	CCNGG	2 cut(s)	152, 159
BmrI	ACTGGG	1 cut(s)	313
BmuI	ACTGGG	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	258
BsaJI	CCNNGG	2 cut(s)	151, 157
Bsc4I	CCNNNNNNNGG	2 cut(s)	163, 190
Bse1I	ACTGG	2 cut(s)	102, 308
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	151, 157
BseGI	GGATG	1 cut(s)	134
BseLI	CCNNNNNNNGG	2 cut(s)	163, 190
BseNI	ACTGG	2 cut(s)	102, 308
BseSI	GKGCMC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	163, 190
BsmAI	GTCTC	1 cut(s)	31
BsnI	GGCC	1 cut(s)	156
Bsp120I	GGGCCC	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp1407I	TGTACA	1 cut(s)	229
Bsp143I	GATC	1 cut(s)	180
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	155, 156
BspPI	GGATC	1 cut(s)	175
BspTI	CTTAAG	1 cut(s)	185
BsrGI	TGTACA	1 cut(s)	229
BsrI	ACTGG	2 cut(s)	102, 308
BssECI	CCNNGG	2 cut(s)	151, 157
BssMI	GATC	1 cut(s)	180
BssNI	GRCGYC	1 cut(s)	258
BssSI	CACGAG	1 cut(s)	233
Bst2BI	CACGAG	1 cut(s)	233
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	2 cut(s)	49, 131
BstACI	GRCGYC	1 cut(s)	258
BstAFI	CTTAAG	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	14
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	134
BstKTI	GATC	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	31
BstMBI	GATC	1 cut(s)	180
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	150, 157
BstSFI	CTRYAG	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	158
BstX2I	RGATCY	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	180
BsuRI	GGCC	1 cut(s)	156
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	2 cut(s)	45, 95
Cfr13I	GGNCC	3 cut(s)	154, 155, 272
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	132, 230
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	8 cut(s)	79, 114, 125, 156, 167, 203, 247, 312
CviKI_1	RGCY	8 cut(s)	79, 114, 125, 156, 167, 203, 247, 312
CviQI	GTAC	2 cut(s)	132, 230
DdeI	CTNAG	1 cut(s)	14
DpnI	GATC	1 cut(s)	182
DpnII	GATC	1 cut(s)	180
Eco24I	GRGCYC	1 cut(s)	158
Eco47I	GGWCC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	2 cut(s)	154, 155
EcoRII	CCWGG	1 cut(s)	157
EcoT38I	GRGCYC	1 cut(s)	158
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	164, 218, 242
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	261
FokI	GGATG	1 cut(s)	121
FriOI	GRGCYC	1 cut(s)	158
Fsp4HI	GCNGC	1 cut(s)	261
GluI	GCNGC	1 cut(s)	261
HaeIII	GGCC	1 cut(s)	156
HapII	CCGG	1 cut(s)	151
HgaI	GACGC	1 cut(s)	266
Hin1I	GRCGYC	1 cut(s)	258
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	112
HpaII	CCGG	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	34, 55
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	260
HpyAV	CCTTC	2 cut(s)	164, 184
HpyCH4III	ACNGT	2 cut(s)	49, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	258
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	83, 144, 164, 171, 289
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	1 cut(s)	182
MboI	GATC	1 cut(s)	180
MflI	RGATCY	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	67
MnlI	CCTC	2 cut(s)	148, 221
MseI	TTAA	3 cut(s)	176, 186, 195
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	1 cut(s)	151
MspR9I	CCNGG	2 cut(s)	152, 159
MvaI	CCWGG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	260
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	1 cut(s)	180
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	155, 156
PkrI	GCNGC	1 cut(s)	262
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	155, 156
PspOMI	GGGCCC	1 cut(s)	154
PspPI	GGNCC	3 cut(s)	154, 155, 272
PsuI	RGATCY	1 cut(s)	180
RsaI	GTAC	2 cut(s)	133, 231
RsaNI	GTAC	2 cut(s)	132, 230
SaqAI	TTAA	3 cut(s)	176, 186, 195
SatI	GCNGC	1 cut(s)	261
Sau3AI	GATC	1 cut(s)	180
Sau96I	GGNCC	3 cut(s)	154, 155, 272
ScrFI	CCNGG	2 cut(s)	152, 159
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	9 cut(s)	20, 66, 81, 116, 127, 195, 205, 213, 314
SfcI	CTRYAG	1 cut(s)	216
SinI	GGWCC	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	32, 185
SmoI	CTYRAG	2 cut(s)	32, 185
SsiI	CCGC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	150, 157
TaaI	ACNGT	2 cut(s)	49, 131
TaqII	GACCGA	1 cut(s)	260
TatI	WGTACW	1 cut(s)	229
TauI	GCSGC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	176, 186, 195
Tru9I	TTAA	3 cut(s)	176, 186, 195
TscAI	CASTG	2 cut(s)	52, 102
TspRI	CASTG	2 cut(s)	52, 102
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	272
XagI	CCTNNNNNAGG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.