Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

41317809 .. 41364464

Gene Structure 46656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG214900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGACATGGCTGAAGGGTTAAAGCCAAGGGATTCCACTTTTATACACTATAGTAAATTGAAAAGATATACTCAGCATAGTACCATTAAGTTGAGAATGAGAATGAAGGCAAGTGAAAATTATTTTACCGGAATACTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

82

Amino Acids

9.41

Weight (kDa)

10.38

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	82, 187
AfiI	CCNNNNNNNGG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	55, 166
AluBI	AGCT	2 cut(s)	63, 74
AluI	AGCT	2 cut(s)	63, 74
AoxI	GGCC	2 cut(s)	3, 103
ApaI	GGGCCC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	103, 104
AsuC2I	CCSGG	1 cut(s)	101
BaeGI	GKGCMC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	107
BcnI	CCSGG	1 cut(s)	101
BfmI	CTRYAG	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	103, 104
BmiI	GGNNCC	2 cut(s)	104, 105
BmrFI	CCNGG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	2 cut(s)	100, 131
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	112
Bse1I	ACTGG	2 cut(s)	51, 246
BseDI	CCNNGG	2 cut(s)	100, 131
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	112
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	2 cut(s)	51, 246
BseSI	GKGCMC	1 cut(s)	107
BshFI	GGCC	2 cut(s)	5, 105
BsiSI	CCGG	2 cut(s)	100, 234
BslI	CCNNNNNNNGG	1 cut(s)	112
BsnI	GGCC	2 cut(s)	5, 105
Bsp120I	GGGCCC	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	5, 105
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	2 cut(s)	104, 105
BsrI	ACTGG	2 cut(s)	51, 246
BssECI	CCNNGG	2 cut(s)	100, 131
BssT1I	CCWWGG	1 cut(s)	131
Bst4CI	ACNGT	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	99
BstSFI	CTRYAG	1 cut(s)	154
BstSLI	GKGCMC	1 cut(s)	107
BsuRI	GGCC	2 cut(s)	5, 105
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	103, 104
Csp6I	GTAC	2 cut(s)	81, 186
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	6 cut(s)	5, 63, 74, 105, 116, 130
CviKI_1	RGCY	6 cut(s)	5, 63, 74, 105, 116, 130
CviQI	GTAC	2 cut(s)	81, 186
DdeI	CTNAG	1 cut(s)	177
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	107
Eco57I	CTGAAG	1 cut(s)	138
EcoO109I	RGGNCCY	2 cut(s)	103, 104
EcoT14I	CCWWGG	1 cut(s)	131
EcoT38I	GRGCYC	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	131
FaeI	CATG	1 cut(s)	115
FaiI	YATR	6 cut(s)	14, 113, 149, 156, 174, 183
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	1 cut(s)	111
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	107
HaeIII	GGCC	2 cut(s)	5, 105
HapII	CCGG	2 cut(s)	100, 234
Hin1II	CATG	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	61
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	2 cut(s)	100, 234
HpyAV	CCTTC	2 cut(s)	113, 205
HpyCH4III	ACNGT	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	115
LpnPI	CCDG	4 cut(s)	32, 113, 120, 227
MhlI	GDGCHC	1 cut(s)	107
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	161, 223
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	16
MnlI	CCTC	1 cut(s)	97
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	125, 192
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	100, 234
MspR9I	CCNGG	1 cut(s)	101
NciI	CCSGG	1 cut(s)	101
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	2 cut(s)	104, 105
PfeI	GAWTC	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	104, 105
PspOMI	GGGCCC	1 cut(s)	103
PspPI	GGNCC	2 cut(s)	103, 104
RsaI	GTAC	2 cut(s)	82, 187
RsaNI	GTAC	2 cut(s)	81, 186
SaqAI	TTAA	2 cut(s)	125, 192
Sau96I	GGNCC	2 cut(s)	103, 104
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	1 cut(s)	107
SetI	ASST	2 cut(s)	65, 76
SfcI	CTRYAG	1 cut(s)	154
Sse9I	AATT	2 cut(s)	161, 223
StyD4I	CCNGG	1 cut(s)	99
StyI	CCWWGG	1 cut(s)	131
TaaI	ACNGT	1 cut(s)	80
TasI	AATT	2 cut(s)	161, 223
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	2 cut(s)	125, 192
Tru9I	TTAA	2 cut(s)	125, 192
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	224
TspRI	CASTG	1 cut(s)	51

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.