Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00363

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

23346 .. 25592

Gene Structure 2247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G009290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGAAATTGTTTGTCAAGGAGGAAACGGGTCCGAAGGTGATTGAATCAAAGGAGCAAATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGACTCGCTCAGCTGTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

92

Amino Acids

10.41

Weight (kDa)

10.25

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	10 - 88	6.6e-17	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	63
AclWI	GGATC	1 cut(s)	187
AcoI	YGGCCR	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	57
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	2 cut(s)	145, 243
AfiI	CCNNNNNNNGG	2 cut(s)	175, 202
AflII	CTTAAG	1 cut(s)	197
AgsI	TTSAA	2 cut(s)	44, 118
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	4 cut(s)	126, 137, 215, 269
AluI	AGCT	4 cut(s)	126, 137, 215, 269
AlwI	GGATC	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	63
AoxI	GGCC	2 cut(s)	69, 166
ApaI	GGGCCC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	57
AspS9I	GGNCC	3 cut(s)	29, 166, 167
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	49
AvaII	GGWCC	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	170
BalI	TGGCCA	1 cut(s)	71
BanII	GRGCYC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	245
BccI	CCATC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	171
BcnI	CCSGG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	228
BfrI	CTTAAG	1 cut(s)	197
BlpI	GCTNAGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	164, 171
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	3 cut(s)	29, 166, 167
BmiI	GGNNCC	3 cut(s)	30, 167, 168
BmrFI	CCNGG	2 cut(s)	164, 171
Bpu1102I	GCTNAGC	1 cut(s)	265
BpuMI	CCSGG	1 cut(s)	164
BsaJI	CCNNGG	2 cut(s)	163, 169
BsaWI	WCCGGW	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	2 cut(s)	175, 202
BseAI	TCCGGA	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	2 cut(s)	163, 169
BseGI	GGATG	2 cut(s)	72, 146
BseLI	CCNNNNNNNGG	2 cut(s)	175, 202
BseMII	CTCAG	1 cut(s)	279
BseSI	GKGCMC	1 cut(s)	170
BshFI	GGCC	2 cut(s)	71, 168
BsiSI	CCGG	2 cut(s)	64, 163
BslI	CCNNNNNNNGG	2 cut(s)	175, 202
BsnI	GGCC	2 cut(s)	71, 168
Bsp120I	GGGCCC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	170
Bsp13I	TCCGGA	1 cut(s)	63
Bsp1407I	TGTACA	1 cut(s)	241
Bsp143I	GATC	1 cut(s)	192
Bsp1720I	GCTNAGC	1 cut(s)	265
BspANI	GGCC	2 cut(s)	71, 168
BspCNI	CTCAG	1 cut(s)	278
BspEI	TCCGGA	1 cut(s)	63
BspLI	GGNNCC	3 cut(s)	30, 167, 168
BspPI	GGATC	1 cut(s)	187
BspTI	CTTAAG	1 cut(s)	197
BsrGI	TGTACA	1 cut(s)	241
BssECI	CCNNGG	2 cut(s)	163, 169
BssMI	GATC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	245
Bst2BI	CACGAG	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	2 cut(s)	114, 143
BstAFI	CTTAAG	1 cut(s)	197
BstAUI	TGTACA	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	2 cut(s)	72, 146
BstKTI	GATC	1 cut(s)	195
BstMBI	GATC	1 cut(s)	192
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	2 cut(s)	162, 169
BstSFI	CTRYAG	1 cut(s)	228
BstSLI	GKGCMC	1 cut(s)	170
BstX2I	RGATCY	1 cut(s)	192
BstYI	RGATCY	1 cut(s)	192
BsuRI	GGCC	2 cut(s)	71, 168
BtsCI	GGATG	2 cut(s)	72, 146
BtsIMutI	CAGTG	1 cut(s)	110
Cfr13I	GGNCC	3 cut(s)	29, 166, 167
Csp6I	GTAC	2 cut(s)	144, 242
CviAII	CATG	1 cut(s)	175
CviJI	RGCY	7 cut(s)	71, 126, 137, 168, 179, 215, 269
CviKI_1	RGCY	7 cut(s)	71, 126, 137, 168, 179, 215, 269
CviQI	GTAC	2 cut(s)	144, 242
DdeI	CTNAG	1 cut(s)	265
DpnI	GATC	1 cut(s)	194
DpnII	GATC	1 cut(s)	192
EaeI	YGGCCR	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	201
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoO109I	RGGNCCY	2 cut(s)	166, 167
EcoRII	CCWGG	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	170
FaeI	CATG	1 cut(s)	178
FaiI	YATR	5 cut(s)	80, 176, 230, 254, 274
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FatI	CATG	1 cut(s)	174
FokI	GGATG	2 cut(s)	79, 133
FriOI	GRGCYC	1 cut(s)	170
HaeIII	GGCC	2 cut(s)	71, 168
HapII	CCGG	2 cut(s)	64, 163
Hin1II	CATG	1 cut(s)	178
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	2 cut(s)	44, 259
HpaII	CCGG	2 cut(s)	64, 163
HphI	GGTGA	1 cut(s)	49
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	1 cut(s)	33
Hpy188III	TCNNGA	1 cut(s)	64
Hpy8I	GTNNAC	1 cut(s)	244
HpyAV	CCTTC	3 cut(s)	28, 176, 196
HpyCH4III	ACNGT	2 cut(s)	114, 143
HpyF3I	CTNAG	1 cut(s)	265
Hsp92II	CATG	1 cut(s)	178
Kpn2I	TCCGGA	1 cut(s)	63
Kzo9I	GATC	1 cut(s)	192
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	4 cut(s)	77, 156, 176, 183
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	194
MboI	GATC	1 cut(s)	192
MflI	RGATCY	1 cut(s)	192
MhlI	GDGCHC	1 cut(s)	170
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	2 cut(s)	5, 57
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	253
MmeI	TCCRAC	1 cut(s)	82
MnlI	CCTC	3 cut(s)	13, 160, 233
Mox20I	TGGCCA	1 cut(s)	71
MroI	TCCGGA	1 cut(s)	63
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	3 cut(s)	188, 198, 207
Msp20I	TGGCCA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	269
MspCI	CTTAAG	1 cut(s)	197
MspI	CCGG	2 cut(s)	64, 163
MspR9I	CCNGG	2 cut(s)	164, 171
MvaI	CCWGG	1 cut(s)	171
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	192
NlaIII	CATG	1 cut(s)	178
NlaIV	GGNNCC	3 cut(s)	30, 167, 168
PfeI	GAWTC	1 cut(s)	44
PleI	GAGTC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	3 cut(s)	30, 167, 168
PspOMI	GGGCCC	1 cut(s)	166
PspPI	GGNCC	3 cut(s)	29, 166, 167
PsuI	RGATCY	1 cut(s)	192
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	145, 243
RsaNI	GTAC	2 cut(s)	144, 242
SaqAI	TTAA	3 cut(s)	188, 198, 207
Sau3AI	GATC	1 cut(s)	192
Sau96I	GGNCC	3 cut(s)	29, 166, 167
SchI	GAGTC	1 cut(s)	253
ScrFI	CCNGG	2 cut(s)	164, 171
SduI	GDGCHC	1 cut(s)	170
SetI	ASST	7 cut(s)	39, 128, 139, 207, 217, 225, 271
SfcI	CTRYAG	1 cut(s)	228
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	2 cut(s)	5, 57
StyD4I	CCNGG	2 cut(s)	162, 169
TaaI	ACNGT	2 cut(s)	114, 143
TasI	AATT	2 cut(s)	5, 57
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	3 cut(s)	188, 198, 207
Tru9I	TTAA	3 cut(s)	188, 198, 207
TscAI	CASTG	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	117
Vha464I	CTTAAG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.