Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

54730123 .. 54735490

Gene Structure 5368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00121930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGAATCATCAGCTTTGTTATACAATCAGCTCAAGACAGCAGAACCGTTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGCGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCCTATAGTTACAGATGTACACGAATCTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAGATTGTCAATATTAAGAAGGGTCAATTCTGTGCTCCTTCTGTCATGGTAAATTCTGCTGAGAAGATTCGACTGGCAGGAAATCCAAATGTGATGGCTTGTGAGAGGGGAACTATGTTTGGTTATAATGATTTAATTGTTGATCCGCGTAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTTGTTGCTGATGTCACACATGCATTGCAACAGCCTGCTGGGAGAAAGTTGGATGACGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCATGTATTGCAAGGACAGCAGTTGCTGTTGGGGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAATGCGCCAGTTGATGGTCCAACCCAATGGCCGTTGCGCCATTTGGAGGATCTACTGGTAGAGCTTATTGCAATTGCTAGGGTAAGCAAGGGGAAGCAACGCTTCCACATTGATCTCTCACCCTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

290

Amino Acids

31.74

Weight (kDa)

6.67

Isoelectric Point (pI)

31.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	15 - 264	2.3e-65	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	516
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccII	CGCG	2 cut(s)	204, 538
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	4 cut(s)	62, 202, 204, 536
AclWI	GGATC	5 cut(s)	226, 527, 560, 725, 795
AcoI	YGGCCR	2 cut(s)	105, 767
AcsI	RAATTY	2 cut(s)	442, 708
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	3 cut(s)	184, 282, 723
AfiI	CCNNNNNNNGG	4 cut(s)	214, 241, 752, 784
AgsI	TTSAA	2 cut(s)	80, 157
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	7 cut(s)	14, 31, 165, 176, 254, 563, 802
AluI	AGCT	7 cut(s)	14, 31, 165, 176, 254, 563, 802
Alw21I	GWGCWC	2 cut(s)	93, 427
AlwI	GGATC	5 cut(s)	226, 527, 560, 725, 795
AlwNI	CAGNNNCTG	1 cut(s)	692
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	3 cut(s)	105, 205, 767
ApeKI	GCWGC	2 cut(s)	374, 377
ApoI	RAATTY	2 cut(s)	442, 708
AspLEI	GCGC	2 cut(s)	745, 777
AspS9I	GGNCC	3 cut(s)	65, 206, 755
AsuHPI	GGTGA	1 cut(s)	849
AvaII	GGWCC	2 cut(s)	65, 755
BalI	TGGCCA	1 cut(s)	107
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	2 cut(s)	93, 427
BbvI	GCAGC	2 cut(s)	386, 389
BccI	CCATC	4 cut(s)	97, 478, 698, 746
BceAI	ACGGC	2 cut(s)	336, 754
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	2 cut(s)	368, 816
BfmI	CTRYAG	1 cut(s)	267
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	205, 375, 378
BlsI	GCNGC	3 cut(s)	206, 376, 379
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	2 cut(s)	65, 755
BmgT120I	GGNCC	3 cut(s)	65, 206, 755
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	644
BpuEI	CTTGAG	2 cut(s)	17, 257
BsaJI	CCNNGG	3 cut(s)	84, 202, 208
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	4 cut(s)	214, 241, 752, 784
Bse1I	ACTGG	6 cut(s)	153, 391, 468, 642, 746, 798
Bse3DI	GCAATG	1 cut(s)	596
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	3 cut(s)	84, 202, 208
BseGI	GGATG	4 cut(s)	108, 185, 631, 709
BseLI	CCNNNNNNNGG	4 cut(s)	214, 241, 752, 784
BseMI	GCAATG	1 cut(s)	596
BseMII	CTCAG	1 cut(s)	441
BseNI	ACTGG	6 cut(s)	153, 391, 468, 642, 746, 798
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	386, 389
BseYI	CCCAGC	1 cut(s)	611
Bsh1236I	CGCG	2 cut(s)	204, 538
BshFI	GGCC	3 cut(s)	107, 207, 769
BsiHKAI	GWGCWC	2 cut(s)	93, 427
BsiSI	CCGG	1 cut(s)	100
BslI	CCNNNNNNNGG	4 cut(s)	214, 241, 752, 784
BsnI	GGCC	3 cut(s)	107, 207, 769
Bsp1286I	GDGCHC	2 cut(s)	93, 427
Bsp13I	TCCGGA	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
BspACI	CCGC	4 cut(s)	62, 202, 204, 536
BspANI	GGCC	3 cut(s)	107, 207, 769
BspCNI	CTCAG	1 cut(s)	442
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	204, 538
BspLI	GGNNCC	1 cut(s)	66
BspPI	GGATC	5 cut(s)	226, 527, 560, 725, 795
BsrDI	GCAATG	1 cut(s)	596
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	6 cut(s)	153, 391, 468, 642, 746, 798
BssECI	CCNNGG	3 cut(s)	84, 202, 208
BssMI	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	48, 182, 297
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	1 cut(s)	450
BstDSI	CCRYGG	1 cut(s)	202
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	4 cut(s)	108, 185, 631, 709
BstFNI	CGCG	2 cut(s)	204, 538
BstHHI	GCGC	2 cut(s)	745, 777
BstKTI	GATC	7 cut(s)	234, 364, 535, 555, 733, 790, 853
BstMBI	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
BstMWI	GCNNNNNNNGC	2 cut(s)	210, 683
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	208
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	2 cut(s)	204, 538
BstV1I	GCAGC	2 cut(s)	386, 389
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	3 cut(s)	231, 361, 787
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	3 cut(s)	231, 361, 787
BsuRI	GGCC	3 cut(s)	107, 207, 769
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	4 cut(s)	108, 185, 631, 709
BtsIMutI	CAGTG	3 cut(s)	146, 302, 649
Cac8I	GCNNGC	1 cut(s)	609
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	2 cut(s)	745, 777
Cfr13I	GGNCC	3 cut(s)	65, 206, 755
Cfr42I	CCGCGG	1 cut(s)	205
Csp6I	GTAC	3 cut(s)	183, 281, 722
CviAII	CATG	6 cut(s)	214, 436, 593, 669, 715, 725
CviQI	GTAC	3 cut(s)	183, 281, 722
DdeI	CTNAG	1 cut(s)	450
DpnI	GATC	7 cut(s)	233, 363, 534, 554, 732, 789, 852
DpnII	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
EaeI	YGGCCR	2 cut(s)	105, 767
Eco32I	GATATC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	65, 755
Eco57I	CTGAAG	1 cut(s)	240
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoRII	CCWGG	1 cut(s)	208
EcoRV	GATATC	1 cut(s)	325
EcoT22I	ATGCAT	1 cut(s)	598
FaeI	CATG	6 cut(s)	217, 439, 596, 672, 718, 728
FalI	AAGNNNNNCTT	4 cut(s)	149, 181, 824, 856
FatI	CATG	6 cut(s)	213, 435, 592, 668, 714, 724
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	3 cut(s)	205, 375, 378
FokI	GGATG	4 cut(s)	115, 172, 638, 716
Fsp4HI	GCNGC	3 cut(s)	205, 375, 378
FspBI	CTAG	2 cut(s)	368, 816
GlaI	GCGC	2 cut(s)	744, 776
GluI	GCNGC	3 cut(s)	205, 375, 378
GsaI	CCCAGC	1 cut(s)	615
HaeIII	GGCC	3 cut(s)	107, 207, 769
HapII	CCGG	1 cut(s)	100
HhaI	GCGC	2 cut(s)	745, 777
Hin1II	CATG	6 cut(s)	217, 439, 596, 672, 718, 728
Hin6I	GCGC	2 cut(s)	743, 775
HinP1I	GCGC	2 cut(s)	743, 775
HindIII	AAGCTT	1 cut(s)	163
HinfI	GANTC	5 cut(s)	5, 80, 287, 334, 457
HpaII	CCGG	1 cut(s)	100
HphI	GGTGA	1 cut(s)	849
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	5 cut(s)	69, 85, 333, 357, 557
Hpy188III	TCNNGA	4 cut(s)	34, 100, 656, 866
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	5 cut(s)	215, 235, 403, 438, 744
HpyCH4III	ACNGT	3 cut(s)	48, 182, 297
HpyCH4V	TGCA	7 cut(s)	320, 341, 374, 596, 601, 677, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	210, 683
HpyF3I	CTNAG	1 cut(s)	450
Hsp92II	CATG	6 cut(s)	217, 439, 596, 672, 718, 728
HspAI	GCGC	2 cut(s)	743, 775
Kpn2I	TCCGGA	1 cut(s)	99
KspI	CCGCGG	1 cut(s)	205
Kzo9I	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
LmnI	GCTCC	2 cut(s)	88, 430
Lsp1109I	GCAGC	2 cut(s)	386, 389
MaeI	CTAG	2 cut(s)	368, 816
MaeIII	GTNAC	2 cut(s)	271, 586
MalI	GATC	7 cut(s)	233, 363, 534, 554, 732, 789, 852
MboI	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
MboII	GAAGA	4 cut(s)	314, 356, 466, 644
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	3 cut(s)	231, 361, 787
MhlI	GDGCHC	2 cut(s)	93, 427
MlsI	TGGCCA	1 cut(s)	107
MluCI	AATT	8 cut(s)	416, 442, 525, 541, 565, 659, 708, 810
MluNI	TGGCCA	1 cut(s)	107
MmeI	TCCRAC	3 cut(s)	118, 603, 782
MnlI	CCTC	7 cut(s)	79, 199, 272, 489, 626, 712, 778
Mox20I	TGGCCA	1 cut(s)	107
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	107
MseI	TTAA	4 cut(s)	227, 246, 405, 524
MslI	CAYNNNNRTG	1 cut(s)	346
Msp20I	TGGCCA	1 cut(s)	107
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	100
MspR9I	CCNGG	1 cut(s)	210
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	2 cut(s)	204, 538
MwoI	GCNNNNNNNGC	2 cut(s)	210, 683
NdeII	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
NlaIII	CATG	6 cut(s)	217, 439, 596, 672, 718, 728
NlaIV	GGNNCC	1 cut(s)	66
NmuCI	GTSAC	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	596
PfeI	GAWTC	5 cut(s)	5, 80, 287, 334, 457
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	3 cut(s)	206, 376, 379
PsiI	TTATAA	1 cut(s)	516
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	3 cut(s)	65, 206, 755
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	3 cut(s)	231, 361, 787
RsaI	GTAC	3 cut(s)	184, 282, 723
RsaNI	GTAC	3 cut(s)	183, 281, 722
RseI	CAYNNNNRTG	1 cut(s)	346
SacII	CCGCGG	1 cut(s)	205
SaqAI	TTAA	4 cut(s)	227, 246, 405, 524
SatI	GCNGC	3 cut(s)	205, 375, 378
Sau3AI	GATC	7 cut(s)	231, 361, 532, 552, 730, 787, 850
Sau96I	GGNCC	3 cut(s)	65, 206, 755
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	2 cut(s)	93, 427
SfcI	CTRYAG	1 cut(s)	267
Sfr303I	CCGCGG	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	205
SinI	GGWCC	2 cut(s)	65, 755
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	32, 236
SmoI	CTYRAG	2 cut(s)	32, 236
Sse9I	AATT	8 cut(s)	416, 442, 525, 541, 565, 659, 708, 810
SsiI	CCGC	4 cut(s)	62, 202, 204, 536
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	2 cut(s)	368, 816
StyD4I	CCNGG	1 cut(s)	208
TaaI	ACNGT	3 cut(s)	48, 182, 297
TaqI	TCGA	1 cut(s)	460
TasI	AATT	8 cut(s)	416, 442, 525, 541, 565, 659, 708, 810
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	207
TfiI	GAWTC	5 cut(s)	5, 80, 287, 334, 457
Tru1I	TTAA	4 cut(s)	227, 246, 405, 524
Tru9I	TTAA	4 cut(s)	227, 246, 405, 524
TscAI	CASTG	3 cut(s)	153, 302, 649
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	2 cut(s)	374, 377
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	1 cut(s)	703
TspGWI	ACGGA	1 cut(s)	645
TspRI	CASTG	3 cut(s)	153, 302, 649
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	2 cut(s)	65, 755
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	442, 708
XceI	RCATGY	1 cut(s)	596
XspI	CTAG	2 cut(s)	368, 816
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.