Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

31208702 .. 31214063

Gene Structure 5362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1213400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGATTCATCAGTTCTGCTATATAACCAGCTCAAGGCGACCGAACCGTTTTTCTTGTTAGCTGGTCCCAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCGAGCACATTAAGAGTGTTGCAACAAAGGTTGGATTGCCACTGGTTTTCAAGTCGAGCTTTGACAAGGCCAACCGTACGTCCTCAAAATCATTCCGGGGTCCTGGCTTGGAAGAAGGCTTAAAGATCCTTGAGAAGGTTAAAACAGCATATGACCTCCCTATAATTACAGATGTACATGAAGCTAGCCAGTGTGAAGCAGTTGGTAAAGTTGCAGATATTATTCAGATTCCTGCATTTTTATGCCGCCAGACAGATCTTCTAGTTGCAGCAGCCAAGACTGGAAAAATTATCAATATTAAGAAGGGCCAGTTCTGTGCTCCTTCTGTCATGGTAAATTCTGCCGAGAAGGTTAGACTGGCTGGAAATCCAAACGTGATGGTTTGTGAGAGGGGAACTATGTTTGGCTATAATGATTTAATTGTTGATCCTCGCAATTTGGAGTGGATCAGAGAAGCTAATTGTCCTGTGGTTGCTGACGTCACACATGCTTTGCAACAGCCTGCTGGGAGAAAGTTGGACGATGGAGGTGTTGCCAGTGGTGGTCTTCGTGAATTGATACCGTGCATTGCGAGGACAGCAGTCGCTGTTGGGGTGGATGGAATTTTCATGGAGGTACATGATGATCCTTCTAACGCTCCAGTTGATGGTCCAACTCAATGGCCCTTGCGCCACTTGGAGGAACTGCTGGTAGAGCTCATAGCAATTGCTAGGGTAAGCAAGGGGAAGCAACCTTTCAACATTGATCTCACACCCTATCGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

291

Amino Acids

31.64

Weight (kDa)

5.92

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	15 - 265	1.4e-66	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	588
AccB7I	CCANNNNNTGG	1 cut(s)	752
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	1 cut(s)	352
AclWI	GGATC	4 cut(s)	226, 527, 560, 725
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	442, 708
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	3 cut(s)	184, 282, 723
AfiI	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
AgsI	TTSAA	3 cut(s)	80, 157, 844
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	6 cut(s)	31, 62, 165, 290, 563, 802
AluI	AGCT	6 cut(s)	31, 62, 165, 290, 563, 802
Alw21I	GWGCWC	4 cut(s)	93, 114, 427, 804
AlwI	GGATC	4 cut(s)	226, 527, 560, 725
AlwNI	CAGNNNCTG	1 cut(s)	692
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	4 cut(s)	105, 174, 412, 767
ApeKI	GCWGC	2 cut(s)	374, 377
ApoI	RAATTY	2 cut(s)	442, 708
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	5 cut(s)	65, 206, 412, 755, 768
AsuC2I	CCSGG	1 cut(s)	203
AsuNHI	GCTAGC	1 cut(s)	290
AvaII	GGWCC	3 cut(s)	65, 206, 755
BanII	GRGCYC	1 cut(s)	804
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	4 cut(s)	93, 114, 427, 804
BbvI	GCAGC	2 cut(s)	386, 389
BccI	CCATC	5 cut(s)	97, 478, 623, 698, 746
BciT130I	CCWGG	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	203
BfaI	CTAG	3 cut(s)	291, 368, 816
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	3 cut(s)	352, 375, 378
BlsI	GCNGC	3 cut(s)	353, 376, 379
Bme1390I	CCNGG	2 cut(s)	203, 210
Bme18I	GGWCC	3 cut(s)	65, 206, 755
BmgT120I	GGNCC	5 cut(s)	65, 206, 412, 755, 768
BmiI	GGNNCC	2 cut(s)	67, 207
BmrFI	CCNGG	2 cut(s)	203, 210
BmtI	GCTAGC	1 cut(s)	294
BoxI	GACNNNNGTC	1 cut(s)	686
BpiI	GAAGAC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	729
BpuEI	CTTGAG	2 cut(s)	17, 257
BpuMI	CCSGG	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	84, 202
BsaWI	WCCGGW	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
Bse1I	ACTGG	7 cut(s)	153, 295, 391, 415, 468, 642, 746
Bse3DI	GCAATG	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	99
BseBI	CCWGG	1 cut(s)	210
BseDI	CCNNGG	2 cut(s)	84, 202
BseGI	GGATG	2 cut(s)	108, 709
BseLI	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
BseMI	GCAATG	1 cut(s)	672
BseNI	ACTGG	7 cut(s)	153, 295, 391, 415, 468, 642, 746
BseRI	GAGGAG	1 cut(s)	101
BseXI	GCAGC	2 cut(s)	386, 389
BseYI	CCCAGC	1 cut(s)	611
Bsh1285I	CGRYCG	1 cut(s)	42
BshFI	GGCC	4 cut(s)	107, 176, 414, 769
BsiEI	CGRYCG	1 cut(s)	42
BsiHKAI	GWGCWC	4 cut(s)	93, 114, 427, 804
BsiSI	CCGG	2 cut(s)	100, 202
BsiWI	CGTACG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	4 cut(s)	34, 241, 752, 784
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	4 cut(s)	107, 176, 414, 769
Bsp1286I	GDGCHC	4 cut(s)	93, 114, 427, 804
Bsp13I	TCCGGA	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	280
Bsp143I	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
BspACI	CCGC	1 cut(s)	352
BspANI	GGCC	4 cut(s)	107, 176, 414, 769
BspEI	TCCGGA	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	67, 207
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	4 cut(s)	226, 527, 560, 725
BsrDI	GCAATG	1 cut(s)	672
BsrGI	TGTACA	1 cut(s)	280
BsrI	ACTGG	7 cut(s)	153, 295, 391, 415, 468, 642, 746
BssECI	CCNNGG	2 cut(s)	84, 202
BssMI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
BssNI	GRCGYC	1 cut(s)	585
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	3 cut(s)	48, 182, 669
BstACI	GRCGYC	1 cut(s)	585
BstAUI	TGTACA	1 cut(s)	280
BstC8I	GCNNGC	2 cut(s)	292, 609
BstENI	CCTNNNNNAGG	1 cut(s)	239
BstF5I	GGATG	2 cut(s)	108, 709
BstHHI	GCGC	1 cut(s)	777
BstKTI	GATC	6 cut(s)	234, 364, 535, 555, 733, 853
BstMBI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
BstMCI	CGRYCG	1 cut(s)	42
BstMWI	GCNNNNNNNGC	2 cut(s)	683, 799
BstNI	CCWGG	1 cut(s)	210
BstNSI	RCATGY	1 cut(s)	596
BstPAI	GACNNNNGTC	1 cut(s)	686
BstSCI	CCNGG	2 cut(s)	201, 208
BstV1I	GCAGC	2 cut(s)	386, 389
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	2 cut(s)	231, 361
BstXI	CCANNNNNNTGG	1 cut(s)	765
BstYI	RGATCY	2 cut(s)	231, 361
BsuRI	GGCC	4 cut(s)	107, 176, 414, 769
BtsCI	GGATG	2 cut(s)	108, 709
BtsIMutI	CAGTG	3 cut(s)	146, 302, 649
Cac8I	GCNNGC	2 cut(s)	292, 609
CaiI	CAGNNNCTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	777
Cfr13I	GGNCC	5 cut(s)	65, 206, 412, 755, 768
Csp6I	GTAC	3 cut(s)	183, 281, 722
CviAII	CATG	5 cut(s)	284, 436, 593, 715, 725
CviQI	GTAC	3 cut(s)	183, 281, 722
DpnI	GATC	6 cut(s)	233, 363, 534, 554, 732, 852
DpnII	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
EaeI	YGGCCR	1 cut(s)	105
Ecl136II	GAGCTC	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	804
Eco47I	GGWCC	3 cut(s)	65, 206, 755
Eco53kI	GAGCTC	1 cut(s)	802
EcoICRI	GAGCTC	1 cut(s)	802
EcoNI	CCTNNNNNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	804
FaeI	CATG	5 cut(s)	287, 439, 596, 718, 728
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	5 cut(s)	283, 435, 592, 714, 724
FauNDI	CATATG	1 cut(s)	256
Fnu4HI	GCNGC	3 cut(s)	352, 375, 378
FokI	GGATG	2 cut(s)	115, 716
FriOI	GRGCYC	1 cut(s)	804
Fsp4HI	GCNGC	3 cut(s)	352, 375, 378
FspBI	CTAG	3 cut(s)	291, 368, 816
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	3 cut(s)	352, 375, 378
GsaI	CCCAGC	1 cut(s)	615
GsuI	CTGGAG	1 cut(s)	729
HaeIII	GGCC	4 cut(s)	107, 176, 414, 769
HapII	CCGG	2 cut(s)	100, 202
HhaI	GCGC	1 cut(s)	777
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	5 cut(s)	287, 439, 596, 718, 728
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HinfI	GANTC	3 cut(s)	5, 80, 334
HpaII	CCGG	2 cut(s)	100, 202
Hpy188I	TCNGA	3 cut(s)	85, 333, 557
Hpy188III	TCNNGA	3 cut(s)	100, 656, 866
HpyAV	CCTTC	6 cut(s)	215, 235, 403, 438, 448, 744
HpyCH4III	ACNGT	3 cut(s)	48, 182, 669
HpyCH4IV	ACGT	3 cut(s)	185, 480, 585
HpyCH4V	TGCA	6 cut(s)	128, 320, 341, 374, 601, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	683, 799
HpySE526I	ACGT	3 cut(s)	185, 480, 585
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	5 cut(s)	287, 439, 596, 718, 728
HspAI	GCGC	1 cut(s)	775
Kpn2I	TCCGGA	1 cut(s)	99
Kzo9I	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
LmnI	GCTCC	3 cut(s)	88, 430, 748
Lsp1109I	GCAGC	2 cut(s)	386, 389
MaeI	CTAG	3 cut(s)	291, 368, 816
MaeII	ACGT	3 cut(s)	185, 480, 585
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	6 cut(s)	233, 363, 534, 554, 732, 852
MboI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
MboII	GAAGA	3 cut(s)	230, 356, 644
MfeI	CAATTG	1 cut(s)	810
MflI	RGATCY	2 cut(s)	231, 361
MhlI	GDGCHC	4 cut(s)	93, 114, 427, 804
MluCI	AATT	9 cut(s)	270, 393, 442, 525, 541, 565, 659, 708, 810
MmeI	TCCRAC	3 cut(s)	118, 603, 782
MnlI	CCTC	9 cut(s)	79, 199, 272, 489, 546, 626, 672, 712, 778
MroI	TCCGGA	1 cut(s)	99
MseI	TTAA	5 cut(s)	117, 227, 246, 405, 524
MslI	CAYNNNNRTG	1 cut(s)	346
MspI	CCGG	2 cut(s)	100, 202
MspR9I	CCNGG	2 cut(s)	203, 210
MunI	CAATTG	1 cut(s)	810
MvaI	CCWGG	1 cut(s)	210
MwoI	GCNNNNNNNGC	2 cut(s)	683, 799
NciI	CCSGG	1 cut(s)	203
NdeI	CATATG	1 cut(s)	256
NdeII	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
NheI	GCTAGC	1 cut(s)	290
NlaIII	CATG	5 cut(s)	287, 439, 596, 718, 728
NlaIV	GGNNCC	2 cut(s)	67, 207
NmeAIII	GCCGAG	2 cut(s)	133, 475
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	596
PfeI	GAWTC	3 cut(s)	5, 80, 334
Pfl23II	CGTACG	1 cut(s)	182
PflMI	CCANNNNNTGG	1 cut(s)	752
PkrI	GCNGC	3 cut(s)	353, 376, 379
PpuMI	RGGWCCY	1 cut(s)	206
PshAI	GACNNNNGTC	1 cut(s)	686
Psp124BI	GAGCTC	1 cut(s)	804
Psp5II	RGGWCCY	1 cut(s)	206
Psp6I	CCWGG	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	611
PspGI	CCWGG	1 cut(s)	208
PspLI	CGTACG	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	67, 207
PspPI	GGNCC	5 cut(s)	65, 206, 412, 755, 768
PspPPI	RGGWCCY	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	692
PsuI	RGATCY	2 cut(s)	231, 361
RsaI	GTAC	3 cut(s)	184, 282, 723
RsaNI	GTAC	3 cut(s)	183, 281, 722
RseI	CAYNNNNRTG	1 cut(s)	346
SacI	GAGCTC	1 cut(s)	804
SaqAI	TTAA	5 cut(s)	117, 227, 246, 405, 524
SatI	GCNGC	3 cut(s)	352, 375, 378
Sau3AI	GATC	6 cut(s)	231, 361, 532, 552, 730, 850
Sau96I	GGNCC	5 cut(s)	65, 206, 412, 755, 768
ScrFI	CCNGG	2 cut(s)	203, 210
SduI	GDGCHC	4 cut(s)	93, 114, 427, 804
SinI	GGWCC	3 cut(s)	65, 206, 755
SmiMI	CAYNNNNRTG	1 cut(s)	346
SmlI	CTYRAG	2 cut(s)	32, 236
SmoI	CTYRAG	2 cut(s)	32, 236
Sse9I	AATT	9 cut(s)	270, 393, 442, 525, 541, 565, 659, 708, 810
SsiI	CCGC	1 cut(s)	352
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	3 cut(s)	291, 368, 816
SstI	GAGCTC	1 cut(s)	804
StyD4I	CCNGG	2 cut(s)	201, 208
TaaI	ACNGT	3 cut(s)	48, 182, 669
TaiI	ACGT	3 cut(s)	188, 483, 588
TaqI	TCGA	1 cut(s)	161
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	9 cut(s)	270, 393, 442, 525, 541, 565, 659, 708, 810
TatI	WGTACW	1 cut(s)	280
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	5, 80, 334
Tru1I	TTAA	5 cut(s)	117, 227, 246, 405, 524
Tru9I	TTAA	5 cut(s)	117, 227, 246, 405, 524
TscAI	CASTG	3 cut(s)	153, 302, 649
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	2 cut(s)	374, 377
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	2 cut(s)	300, 703
TspRI	CASTG	3 cut(s)	153, 302, 649
Van91I	CCANNNNNTGG	1 cut(s)	752
VpaK11BI	GGWCC	3 cut(s)	65, 206, 755
XagI	CCTNNNNNAGG	1 cut(s)	239
XapI	RAATTY	2 cut(s)	442, 708
XceI	RCATGY	1 cut(s)	596
XspI	CTAG	3 cut(s)	291, 368, 816
ZraI	GACGTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.