Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Forward (+)

59031122 .. 59035337

Gene Structure 4216 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG383700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTGTGGAGAAAGAAGCTAAATGGCTGATGTTTTCCTGTGGAGGGATAAGAAGCTATCAGGAGCATTGCAGCCGCTCATCTCAAGAGAAACAAATCCGCTCCAAAGTCAAAGTTAGATTGCCACTAGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTACGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGGTGAGCTCGCATCCCTGTTCATCTTTTAGATTCCCATGTTCAGCAAGAAAAATTCGCACTGATCATAAGTTGTTTCTCACATTGATCAATGTTGTTTTCTTTTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

127

Amino Acids

14.46

Weight (kDa)

10.19

Isoelectric Point (pI)

37.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	29 - 94	4.7e-12	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	78, 102
AciI	CCGC	2 cut(s)	76, 100
AclWI	GGATC	1 cut(s)	205
AcsI	RAATTY	1 cut(s)	327
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	163, 261
AfiI	CCNNNNNNNGG	3 cut(s)	45, 193, 220
AflII	CTTAAG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	136
AhlI	ACTAGT	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	6 cut(s)	20, 57, 144, 155, 233, 282
AluI	AGCT	6 cut(s)	20, 57, 144, 155, 233, 282
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	205
AoxI	GGCC	1 cut(s)	184
ApaI	GGGCCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	72
ApoI	RAATTY	1 cut(s)	327
AspS9I	GGNCC	2 cut(s)	184, 185
AsuHPI	GGTGA	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	188
BanII	GRGCYC	2 cut(s)	188, 284
BauI	CACGAG	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	84
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	2 cut(s)	337, 360
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	2 cut(s)	128, 382
BfmI	CTRYAG	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	215
BisI	GCNGC	2 cut(s)	73, 76
BlsI	GCNGC	2 cut(s)	74, 77
Bme1390I	CCNGG	1 cut(s)	189
BmgT120I	GGNCC	2 cut(s)	184, 185
BmiI	GGNNCC	2 cut(s)	185, 186
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	3 cut(s)	45, 193, 220
Bse3DI	GCAATG	1 cut(s)	67
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	164, 286
BseLI	CCNNNNNNNGG	3 cut(s)	45, 193, 220
BseMI	GCAATG	1 cut(s)	67
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	84
BshFI	GGCC	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	284
BslI	CCNNNNNNNGG	3 cut(s)	45, 193, 220
BsnI	GGCC	1 cut(s)	186
Bsp120I	GGGCCC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	188, 284
Bsp1407I	TGTACA	1 cut(s)	259
Bsp143I	GATC	3 cut(s)	210, 337, 360
BspACI	CCGC	2 cut(s)	76, 100
BspANI	GGCC	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	185, 186
BspPI	GGATC	1 cut(s)	205
BspTI	CTTAAG	1 cut(s)	215
BsrBI	CCGCTC	2 cut(s)	78, 102
BsrDI	GCAATG	1 cut(s)	67
BsrGI	TGTACA	1 cut(s)	259
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	3 cut(s)	210, 337, 360
BssSI	CACGAG	1 cut(s)	263
Bst2BI	CACGAG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	1 cut(s)	161
BstAFI	CTTAAG	1 cut(s)	215
BstAUI	TGTACA	1 cut(s)	259
BstC8I	GCNNGC	1 cut(s)	284
BstENI	CCTNNNNNAGG	1 cut(s)	218
BstF5I	GGATG	2 cut(s)	164, 286
BstKTI	GATC	3 cut(s)	213, 340, 363
BstMBI	GATC	3 cut(s)	210, 337, 360
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	210
BstYI	RGATCY	1 cut(s)	210
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	2 cut(s)	164, 286
BtsIMutI	CAGTG	1 cut(s)	333
Cac8I	GCNNGC	1 cut(s)	284
Cfr13I	GGNCC	2 cut(s)	184, 185
Csp6I	GTAC	2 cut(s)	162, 260
CviAII	CATG	2 cut(s)	193, 312
CviQI	GTAC	2 cut(s)	162, 260
DpnI	GATC	3 cut(s)	212, 339, 362
DpnII	GATC	3 cut(s)	210, 337, 360
Ecl136II	GAGCTC	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	188, 284
Eco53kI	GAGCTC	1 cut(s)	282
Eco57I	CTGAAG	1 cut(s)	219
EcoICRI	GAGCTC	1 cut(s)	282
EcoNI	CCTNNNNNAGG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	184, 185
EcoRII	CCWGG	1 cut(s)	187
EcoT38I	GRGCYC	2 cut(s)	188, 284
FaeI	CATG	2 cut(s)	196, 315
FaiI	YATR	5 cut(s)	194, 248, 272, 313, 342
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FatI	CATG	2 cut(s)	192, 311
FbaI	TGATCA	2 cut(s)	337, 360
Fnu4HI	GCNGC	2 cut(s)	73, 76
FokI	GGATG	2 cut(s)	151, 273
FriOI	GRGCYC	2 cut(s)	188, 284
Fsp4HI	GCNGC	2 cut(s)	73, 76
FspBI	CTAG	2 cut(s)	128, 382
GluI	GCNGC	2 cut(s)	73, 76
HaeIII	GGCC	1 cut(s)	186
Hin1II	CATG	2 cut(s)	196, 315
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	1 cut(s)	306
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188III	TCNNGA	2 cut(s)	62, 86
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	194, 214
HpyCH4III	ACNGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	196, 315
Ksp22I	TGATCA	2 cut(s)	337, 360
Kzo9I	GATC	3 cut(s)	210, 337, 360
LmnI	GCTCC	2 cut(s)	64, 107
LpnPI	CCDG	6 cut(s)	47, 52, 174, 201, 260, 304
Lsp1109I	GCAGC	1 cut(s)	84
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	128, 382
MaeIII	GTNAC	1 cut(s)	250
MalI	GATC	3 cut(s)	212, 339, 362
MbiI	CCGCTC	2 cut(s)	78, 102
MboI	GATC	3 cut(s)	210, 337, 360
MflI	RGATCY	1 cut(s)	210
MhlI	GDGCHC	2 cut(s)	188, 284
MluCI	AATT	1 cut(s)	327
MnlI	CCTC	3 cut(s)	38, 178, 251
MseI	TTAA	3 cut(s)	206, 216, 225
MspCI	CTTAAG	1 cut(s)	215
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
NdeII	GATC	3 cut(s)	210, 337, 360
NlaIII	CATG	2 cut(s)	196, 315
NlaIV	GGNNCC	2 cut(s)	185, 186
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	2 cut(s)	74, 77
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	185, 186
PspOMI	GGGCCC	1 cut(s)	184
PspPI	GGNCC	2 cut(s)	184, 185
PsuI	RGATCY	1 cut(s)	210
RsaI	GTAC	2 cut(s)	163, 261
RsaNI	GTAC	2 cut(s)	162, 260
SacI	GAGCTC	1 cut(s)	284
SaqAI	TTAA	3 cut(s)	206, 216, 225
SatI	GCNGC	2 cut(s)	73, 76
Sau3AI	GATC	3 cut(s)	210, 337, 360
Sau96I	GGNCC	2 cut(s)	184, 185
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	188, 284
SetI	ASST	9 cut(s)	22, 59, 146, 157, 225, 235, 243, 279, 284
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	246
SmlI	CTYRAG	2 cut(s)	84, 215
SmoI	CTYRAG	2 cut(s)	84, 215
SpeI	ACTAGT	1 cut(s)	127
Sse9I	AATT	1 cut(s)	327
SsiI	CCGC	2 cut(s)	76, 100
SspMI	CTAG	2 cut(s)	128, 382
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	1 cut(s)	161
TasI	AATT	1 cut(s)	327
TatI	WGTACW	1 cut(s)	259
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	3 cut(s)	206, 216, 225
Tru9I	TTAA	3 cut(s)	206, 216, 225
TscAI	CASTG	1 cut(s)	340
TseI	GCWGC	1 cut(s)	72
TspDTI	ATGAA	1 cut(s)	285
TspRI	CASTG	1 cut(s)	340
Vha464I	CTTAAG	1 cut(s)	215
XagI	CCTNNNNNAGG	1 cut(s)	218
XapI	RAATTY	1 cut(s)	327
XspI	CTAG	2 cut(s)	128, 382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.