Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

35076432 .. 35086699

Gene Structure 10268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGTATGGGTTTTTAGCCAATCATCCACCAAGTCACAGATCATGCCAACTCTCGAAAATTCTCAAGTGGTAGTAACCTCCTTGGAACCGAGAAAGAGTTCAAGATTTTCATGGAGAAATATGGGAAGAAGTATCCAACTAGAAAGGAGTACATGCAGGGCCGTCGAGCACCAAGCTCTGGATCCGACGGTAGTCCACGACGTCAAAGAGTTCTCGGATCTGTCTGAGGAGGATATCGAGGGGATGTACACCGGCGTGAGAGGTGGGCCCCGCTTAAATGATAGCGGCGGTGGTGCAGAGAGTACGGTTGAGCTCATGGACGTTAAACCATTTTTCTTATTAGCGGGTCCGAATGTGATTGAATCCGAGGAGCAAATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTCAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGGCCCTGGCATGGCTGAAGGGTTAAAGATCCTTAAGAAGGTTAAAATAGCTTTTGACCTCCCTATAGTTACAAATGTACACGAGTTTATACAGTGCGAAGAAGTTGGCAAATTAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGCCGTCAGACTCGCTCAACTGTATGGTAGACTTAGCGGGAAAAGATGGCATTGCGAAGGTTGGGTGTCAGGAAGTGTTTATATGCAATAAAGCAAGTGCGATTTGGTGCCCAGTCTCTCTATCTTCATATCGTGTTTTTGGTAAGAGCGAATTAAAAAAAAAACTTAATGGGGTAAGTGGGAAAAAAATCTCTAAAAATAGGGTAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

281

Amino Acids

31.09

Weight (kDa)

9.04

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	109 - 200	2.7e-22	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	204
AccB1I	GGYRCC	1 cut(s)	741
AccB7I	CCANNNNNTGG	1 cut(s)	178
AccI	GTMKAC	1 cut(s)	663
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	5 cut(s)	271, 285, 288, 344, 671
AclWI	GGATC	4 cut(s)	176, 189, 225, 508
AcoI	YGGCCR	1 cut(s)	387
AcsI	RAATTY	2 cut(s)	58, 375
AcuI	CTGAAG	1 cut(s)	522
AcyI	GRCGYC	1 cut(s)	201
AfaI	GTAC	5 cut(s)	151, 248, 304, 466, 564
AfiI	CCNNNNNNNGG	3 cut(s)	178, 496, 523
AflII	CTTAAG	1 cut(s)	518
AgsI	TTSAA	3 cut(s)	102, 362, 439
AjnI	CCWGG	1 cut(s)	490
AleI	CACNNNNGTG	1 cut(s)	254
AluBI	AGCT	5 cut(s)	176, 313, 447, 458, 536
AluI	AGCT	5 cut(s)	176, 313, 447, 458, 536
Alw21I	GWGCWC	2 cut(s)	171, 315
Alw26I	GTCTC	1 cut(s)	754
AlwI	GGATC	4 cut(s)	176, 189, 225, 508
Aor13HI	TCCGGA	1 cut(s)	381
AoxI	GGCC	4 cut(s)	159, 266, 387, 487
ApaI	GGGCCC	2 cut(s)	270, 491
ApoI	RAATTY	2 cut(s)	58, 375
Asp700I	GAANNNNTTC	1 cut(s)	97
AspS9I	GGNCC	6 cut(s)	159, 266, 267, 347, 487, 488
AsuC2I	CCSGG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	347
BaeGI	GKGCMC	3 cut(s)	270, 491, 746
BalI	TGGCCA	1 cut(s)	389
BamHI	GGATCC	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	741
BanII	GRGCYC	3 cut(s)	270, 315, 491
BauI	CACGAG	1 cut(s)	566
Bbv12I	GWGCWC	2 cut(s)	171, 315
BccI	CCATC	2 cut(s)	379, 674
BceAI	ACGGC	2 cut(s)	146, 622
BcgI	CGANNNNNNTGC	2 cut(s)	145, 179
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	143
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	754
BfaI	CTAG	1 cut(s)	140
BfmI	CTRYAG	1 cut(s)	549
BfrI	CTTAAG	1 cut(s)	518
BfuI	GTATCC	1 cut(s)	143
BisI	GCNGC	1 cut(s)	286
BlsI	GCNGC	1 cut(s)	287
Bme1390I	CCNGG	2 cut(s)	485, 492
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	6 cut(s)	159, 266, 267, 347, 487, 488
BmiI	GGNNCC	8 cut(s)	87, 183, 268, 269, 348, 488, 489, 743
BmrFI	CCNGG	2 cut(s)	485, 492
BmrI	ACTGGG	1 cut(s)	740
BmuI	ACTGGG	1 cut(s)	740
BoxI	GACNNNNGTC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	485
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	4 cut(s)	81, 366, 484, 490
BsaWI	WCCGGW	1 cut(s)	381
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 496, 523
Bse118I	RCCGGY	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	435, 746
Bse3DI	GCAATG	1 cut(s)	684
BseAI	TCCGGA	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	4 cut(s)	81, 366, 484, 490
BseGI	GGATG	4 cut(s)	23, 249, 390, 467
BseLI	CCNNNNNNNGG	3 cut(s)	178, 496, 523
BseMI	GCAATG	1 cut(s)	684
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	2 cut(s)	435, 746
BseRI	GAGGAG	2 cut(s)	242, 383
BseSI	GKGCMC	3 cut(s)	270, 491, 746
BsgI	GTGCAG	1 cut(s)	315
BshFI	GGCC	4 cut(s)	161, 268, 389, 489
BshNI	GGYRCC	1 cut(s)	741
BsiHKAI	GWGCWC	2 cut(s)	171, 315
BsiSI	CCGG	3 cut(s)	252, 382, 484
BslI	CCNNNNNNNGG	3 cut(s)	178, 496, 523
BsmAI	GTCTC	1 cut(s)	754
BsnI	GGCC	4 cut(s)	161, 268, 389, 489
Bsp120I	GGGCCC	2 cut(s)	266, 487
Bsp1286I	GDGCHC	5 cut(s)	171, 270, 315, 491, 746
Bsp13I	TCCGGA	1 cut(s)	381
Bsp1407I	TGTACA	2 cut(s)	246, 562
Bsp143I	GATC	4 cut(s)	39, 181, 217, 513
BspACI	CCGC	5 cut(s)	271, 285, 288, 344, 671
BspANI	GGCC	4 cut(s)	161, 268, 389, 489
BspCNI	CTCAG	1 cut(s)	217
BspEI	TCCGGA	1 cut(s)	381
BspLI	GGNNCC	8 cut(s)	87, 183, 268, 269, 348, 488, 489, 743
BspPI	GGATC	4 cut(s)	176, 189, 225, 508
BspT107I	GGYRCC	1 cut(s)	741
BspTI	CTTAAG	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	684
BsrFI	RCCGGY	1 cut(s)	251
BsrGI	TGTACA	2 cut(s)	246, 562
BsrI	ACTGG	2 cut(s)	435, 746
BssAI	RCCGGY	1 cut(s)	251
BssECI	CCNNGG	4 cut(s)	81, 366, 484, 490
BssMI	GATC	4 cut(s)	39, 181, 217, 513
BssNI	GRCGYC	1 cut(s)	201
BssSI	CACGAG	1 cut(s)	566
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	5 cut(s)	190, 307, 464, 579, 656
BstACI	GRCGYC	1 cut(s)	201
BstAFI	CTTAAG	1 cut(s)	518
BstAUI	TGTACA	2 cut(s)	246, 562
BstDEI	CTNAG	2 cut(s)	225, 667
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	4 cut(s)	23, 249, 390, 467
BstKTI	GATC	4 cut(s)	42, 184, 220, 516
BstMAI	GTCTC	1 cut(s)	754
BstMBI	GATC	4 cut(s)	39, 181, 217, 513
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	156
BstPAI	GACNNNNGTC	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	483, 490
BstSFI	CTRYAG	1 cut(s)	549
BstSLI	GKGCMC	3 cut(s)	270, 491, 746
BstX2I	RGATCY	3 cut(s)	181, 217, 513
BstYI	RGATCY	3 cut(s)	181, 217, 513
BsuI	GTATCC	1 cut(s)	143
BsuRI	GGCC	4 cut(s)	161, 268, 389, 489
BtsCI	GGATG	4 cut(s)	23, 249, 390, 467
BtsIMutI	CAGTG	2 cut(s)	428, 584
Cfr10I	RCCGGY	1 cut(s)	251
Cfr13I	GGNCC	6 cut(s)	159, 266, 267, 347, 487, 488
Csp6I	GTAC	5 cut(s)	150, 247, 303, 465, 563
CviAII	CATG	5 cut(s)	43, 111, 153, 316, 496
CviQI	GTAC	5 cut(s)	150, 247, 303, 465, 563
DdeI	CTNAG	2 cut(s)	225, 667
DpnI	GATC	4 cut(s)	41, 183, 219, 515
DpnII	GATC	4 cut(s)	39, 181, 217, 513
EaeI	YGGCCR	1 cut(s)	387
Ecl136II	GAGCTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	3 cut(s)	270, 315, 491
Eco32I	GATATC	2 cut(s)	235, 611
Eco47I	GGWCC	1 cut(s)	347
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	1 cut(s)	522
EcoICRI	GAGCTC	1 cut(s)	313
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoO109I	RGGNCCY	3 cut(s)	267, 487, 488
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	2 cut(s)	235, 611
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	3 cut(s)	270, 315, 491
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	5 cut(s)	46, 114, 156, 319, 499
FalI	AAGNNNNNCTT	2 cut(s)	431, 463
FatI	CATG	5 cut(s)	42, 110, 152, 315, 495
FauI	CCCGC	3 cut(s)	278, 337, 664
FblI	GTMKAC	1 cut(s)	663
Fnu4HI	GCNGC	1 cut(s)	286
FokI	GGATG	4 cut(s)	10, 256, 397, 454
FriOI	GRGCYC	3 cut(s)	270, 315, 491
Fsp4HI	GCNGC	1 cut(s)	286
FspBI	CTAG	1 cut(s)	140
GluI	GCNGC	1 cut(s)	286
HaeIII	GGCC	4 cut(s)	161, 268, 389, 489
HapII	CCGG	3 cut(s)	252, 382, 484
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	46, 114, 156, 319, 499
HindIII	AAGCTT	1 cut(s)	445
HinfI	GANTC	3 cut(s)	362, 620, 644
HpaII	CCGG	3 cut(s)	252, 382, 484
Hpy166II	GTNNAC	4 cut(s)	196, 249, 565, 664
Hpy188I	TCNGA	7 cut(s)	186, 217, 226, 351, 367, 619, 643
Hpy188III	TCNNGA	5 cut(s)	53, 102, 179, 382, 704
Hpy8I	GTNNAC	4 cut(s)	196, 249, 565, 664
Hpy99I	CGWCG	3 cut(s)	167, 190, 203
HpyAV	CCTTC	3 cut(s)	497, 517, 685
HpyCH4III	ACNGT	5 cut(s)	190, 307, 464, 579, 656
HpyCH4IV	ACGT	2 cut(s)	201, 321
HpyCH4V	TGCA	5 cut(s)	156, 296, 606, 627, 720
HpyF3I	CTNAG	2 cut(s)	225, 667
HpySE526I	ACGT	2 cut(s)	201, 321
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	46, 114, 156, 319, 499
Kpn2I	TCCGGA	1 cut(s)	381
Kzo9I	GATC	4 cut(s)	39, 181, 217, 513
LmnI	GCTCC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	140
MaeII	ACGT	2 cut(s)	201, 321
MaeIII	GTNAC	3 cut(s)	33, 73, 553
MalI	GATC	4 cut(s)	41, 183, 219, 515
MboI	GATC	4 cut(s)	39, 181, 217, 513
MboII	GAAGA	3 cut(s)	138, 596, 750
MflI	RGATCY	3 cut(s)	181, 217, 513
MhlI	GDGCHC	5 cut(s)	171, 270, 315, 491, 746
MlsI	TGGCCA	1 cut(s)	389
MluCI	AATT	5 cut(s)	58, 375, 596, 785, 841
MluNI	TGGCCA	1 cut(s)	389
MlyI	GAGTC	1 cut(s)	638
MmeI	TCCRAC	3 cut(s)	160, 209, 400
MnlI	CCTC	8 cut(s)	88, 220, 223, 232, 254, 361, 481, 554
Mox20I	TGGCCA	1 cut(s)	389
MroI	TCCGGA	1 cut(s)	381
MroXI	GAANNNNTTC	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	389
MseI	TTAA	8 cut(s)	275, 324, 509, 519, 528, 599, 788, 801
MslI	CAYNNNNRTG	2 cut(s)	254, 632
Msp20I	TGGCCA	1 cut(s)	389
MspCI	CTTAAG	1 cut(s)	518
MspI	CCGG	3 cut(s)	252, 382, 484
MspR9I	CCNGG	2 cut(s)	485, 492
MvaI	CCWGG	1 cut(s)	492
NciI	CCSGG	1 cut(s)	485
NdeII	GATC	4 cut(s)	39, 181, 217, 513
NlaIII	CATG	5 cut(s)	46, 114, 156, 319, 499
NlaIV	GGNNCC	8 cut(s)	87, 183, 268, 269, 348, 488, 489, 743
NmuCI	GTSAC	1 cut(s)	33
NspI	RCATGY	1 cut(s)	156
OliI	CACNNNNGTG	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	362, 620
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	287
PleI	GAGTC	1 cut(s)	638
PpsI	GAGTC	1 cut(s)	638
PshAI	GACNNNNGTC	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	8 cut(s)	87, 183, 268, 269, 348, 488, 489, 743
PspOMI	GGGCCC	2 cut(s)	266, 487
PspPI	GGNCC	6 cut(s)	159, 266, 267, 347, 487, 488
PsuI	RGATCY	3 cut(s)	181, 217, 513
RsaI	GTAC	5 cut(s)	151, 248, 304, 466, 564
RsaNI	GTAC	5 cut(s)	150, 247, 303, 465, 563
RseI	CAYNNNNRTG	2 cut(s)	254, 632
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	8 cut(s)	275, 324, 509, 519, 528, 599, 788, 801
SatI	GCNGC	1 cut(s)	286
Sau3AI	GATC	4 cut(s)	39, 181, 217, 513
Sau96I	GGNCC	6 cut(s)	159, 266, 267, 347, 487, 488
SchI	GAGTC	1 cut(s)	638
ScrFI	CCNGG	2 cut(s)	485, 492
SduI	GDGCHC	5 cut(s)	171, 270, 315, 491, 746
SfcI	CTRYAG	1 cut(s)	549
SgrAI	CRCCGGYG	1 cut(s)	251
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	254, 632
SmlI	CTYRAG	2 cut(s)	63, 518
SmoI	CTYRAG	2 cut(s)	63, 518
Sse9I	AATT	5 cut(s)	58, 375, 596, 785, 841
SsiI	CCGC	5 cut(s)	271, 285, 288, 344, 671
SspMI	CTAG	1 cut(s)	140
SstI	GAGCTC	1 cut(s)	315
StyD4I	CCNGG	2 cut(s)	483, 490
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	5 cut(s)	190, 307, 464, 579, 656
TaiI	ACGT	2 cut(s)	204, 324
TaqI	TCGA	3 cut(s)	54, 165, 237
TasI	AATT	5 cut(s)	58, 375, 596, 785, 841
TatI	WGTACW	3 cut(s)	149, 246, 562
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	2 cut(s)	362, 620
Tru1I	TTAA	8 cut(s)	275, 324, 509, 519, 528, 599, 788, 801
Tru9I	TTAA	8 cut(s)	275, 324, 509, 519, 528, 599, 788, 801
TscAI	CASTG	2 cut(s)	435, 584
TseFI	GTSAC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	33
TspDTI	ATGAA	2 cut(s)	99, 750
TspRI	CASTG	2 cut(s)	435, 584
Van91I	CCANNNNNTGG	1 cut(s)	178
Vha464I	CTTAAG	1 cut(s)	518
VpaK11BI	GGWCC	1 cut(s)	347
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	58, 375
XceI	RCATGY	1 cut(s)	156
XmiI	GTMKAC	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	97
XspI	CTAG	1 cut(s)	140
ZraI	GACGTC	1 cut(s)	202

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.