Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

26687440 .. 26691902

Gene Structure 4463 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGTTTTCCTGTGGAGGGATAAGAAGCTATCAGGAGGTTGATAATTGCACAATGTTAGTCTTAATTAGTTTTGTTAGTTTAGCAAGATTGATACCTGCATATACTGAAAGTATCAGCATTGCAGCAGCTCATCTCAAGAGAAACAAATCCCCTCCAAAGTCAAAACCGTTTTTCTTATTAGCGGGTCCAAATGTGATTGAATCCGAGGAGCACATTTTCCGGATGGCCAAGCACATAAAGACTATTGCGACAAAAGTTGGATTGCCACTGGTGTTCAAGTTAAGCTTTGACAAAGCTAACCGTACATCCTCAAAATCATTCCGGGACCCTGGCATGGCTGAAGGGTTAAAGATCCTTGAGAAGGTTAAAATAGCTTATGACCTCCGTATAGTTACAAATGTACACGAGTTTATACAGTGCGAAGAAGTTGGCAAAGTTGCAGATATCATTCAGATTCCTGCATTTTTATGTCGTCAGACTCGCTCAGCTGTATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

165

Amino Acids

18.48

Weight (kDa)

9.48

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_1	PF00793	54 - 161	9.1e-28	DAHP synthetase I family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	103
AccIII	TCCGGA	1 cut(s)	219
AciI	CCGC	1 cut(s)	182
AclWI	GGATC	1 cut(s)	346
AcoI	YGGCCR	1 cut(s)	225
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	2 cut(s)	304, 402
AfiI	CCNNNNNNNGG	3 cut(s)	15, 334, 361
AgsI	TTSAA	2 cut(s)	200, 277
AjnI	CCWGG	1 cut(s)	328
AluBI	AGCT	6 cut(s)	27, 128, 285, 296, 374, 488
AluI	AGCT	6 cut(s)	27, 128, 285, 296, 374, 488
Alw21I	GWGCWC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	346
Aor13HI	TCCGGA	1 cut(s)	219
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	2 cut(s)	122, 125
AspS9I	GGNCC	2 cut(s)	185, 325
AsuC2I	CCSGG	1 cut(s)	323
AvaII	GGWCC	2 cut(s)	185, 325
BalI	TGGCCA	1 cut(s)	227
BauI	CACGAG	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	2 cut(s)	134, 137
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	330
BcnI	CCSGG	1 cut(s)	323
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	2 cut(s)	123, 126
BlpI	GCTNAGC	1 cut(s)	484
BlsI	GCNGC	2 cut(s)	124, 127
Bme1390I	CCNGG	2 cut(s)	323, 330
Bme18I	GGWCC	2 cut(s)	185, 325
BmgT120I	GGNCC	2 cut(s)	185, 325
BmiI	GGNNCC	3 cut(s)	186, 326, 327
BmrFI	CCNGG	2 cut(s)	323, 330
Bpu1102I	GCTNAGC	1 cut(s)	484
BpuEI	CTTGAG	2 cut(s)	119, 377
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	2 cut(s)	204, 328
BsaWI	WCCGGW	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	3 cut(s)	15, 334, 361
Bse1I	ACTGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	117
BseAI	TCCGGA	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	330
BseDI	CCNNGG	2 cut(s)	204, 328
BseGI	GGATG	2 cut(s)	228, 305
BseLI	CCNNNNNNNGG	3 cut(s)	15, 334, 361
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	134, 137
BshFI	GGCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	220, 322
BslFI	GGGAC	1 cut(s)	338
BslI	CCNNNNNNNGG	3 cut(s)	15, 334, 361
BsmFI	GGGAC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	227
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	219
Bsp1407I	TGTACA	1 cut(s)	400
Bsp143I	GATC	1 cut(s)	351
Bsp1720I	GCTNAGC	1 cut(s)	484
BspACI	CCGC	1 cut(s)	182
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	1 cut(s)	497
BspEI	TCCGGA	1 cut(s)	219
BspLI	GGNNCC	3 cut(s)	186, 326, 327
BspMI	ACCTGC	1 cut(s)	103
BspPI	GGATC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	117
BsrGI	TGTACA	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	273
BssECI	CCNNGG	2 cut(s)	204, 328
BssMI	GATC	1 cut(s)	351
BssSI	CACGAG	1 cut(s)	404
Bst2BI	CACGAG	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	330
Bst4CI	ACNGT	3 cut(s)	168, 302, 417
BstAUI	TGTACA	1 cut(s)	400
BstDEI	CTNAG	1 cut(s)	484
BstENI	CCTNNNNNAGG	1 cut(s)	359
BstF5I	GGATG	2 cut(s)	228, 305
BstKTI	GATC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	330
BstSCI	CCNGG	2 cut(s)	321, 328
BstV1I	GCAGC	2 cut(s)	134, 137
BstX2I	RGATCY	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	351
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	2 cut(s)	228, 305
BtsIMutI	CAGTG	2 cut(s)	266, 422
BveI	ACCTGC	1 cut(s)	103
Cfr13I	GGNCC	2 cut(s)	185, 325
Csp6I	GTAC	2 cut(s)	303, 401
CviAII	CATG	1 cut(s)	334
CviJI	RGCY	8 cut(s)	27, 128, 227, 285, 296, 338, 374, 488
CviKI_1	RGCY	8 cut(s)	27, 128, 227, 285, 296, 338, 374, 488
CviQI	GTAC	2 cut(s)	303, 401
DdeI	CTNAG	1 cut(s)	484
DpnI	GATC	1 cut(s)	353
DpnII	GATC	1 cut(s)	351
EaeI	YGGCCR	1 cut(s)	225
Eco32I	GATATC	1 cut(s)	445
Eco47I	GGWCC	2 cut(s)	185, 325
Eco57I	CTGAAG	1 cut(s)	360
EcoNI	CCTNNNNNAGG	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRII	CCWGG	1 cut(s)	328
EcoRV	GATATC	1 cut(s)	445
FaeI	CATG	1 cut(s)	337
FaiI	YATR	9 cut(s)	100, 102, 236, 335, 378, 389, 413, 469, 493
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	338
FatI	CATG	1 cut(s)	333
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	2 cut(s)	123, 126
FokI	GGATG	2 cut(s)	235, 292
Fsp4HI	GCNGC	2 cut(s)	123, 126
GluI	GCNGC	2 cut(s)	123, 126
HaeIII	GGCC	1 cut(s)	227
HapII	CCGG	2 cut(s)	220, 322
Hin1II	CATG	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	283
HinfI	GANTC	3 cut(s)	200, 454, 478
HpaII	CCGG	2 cut(s)	220, 322
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	3 cut(s)	205, 453, 477
Hpy188III	TCNNGA	3 cut(s)	32, 136, 220
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	335, 355
HpyCH4III	ACNGT	3 cut(s)	168, 302, 417
HpyCH4V	TGCA	5 cut(s)	48, 98, 122, 440, 461
HpyF3I	CTNAG	1 cut(s)	484
Hsp92II	CATG	1 cut(s)	337
KflI	GGGWCCC	1 cut(s)	325
Kpn2I	TCCGGA	1 cut(s)	219
Kzo9I	GATC	1 cut(s)	351
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	9 cut(s)	17, 22, 108, 233, 254, 315, 335, 342, 471
Lsp1109I	GCAGC	2 cut(s)	134, 137
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	1 cut(s)	353
MboI	GATC	1 cut(s)	351
MboII	GAAGA	1 cut(s)	434
MflI	RGATCY	1 cut(s)	351
MhlI	GDGCHC	1 cut(s)	213
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	2 cut(s)	43, 63
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	238
MnlI	CCTC	6 cut(s)	8, 28, 162, 199, 319, 392
Mox20I	TGGCCA	1 cut(s)	227
MroI	TCCGGA	1 cut(s)	219
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	4 cut(s)	62, 281, 347, 366
MslI	CAYNNNNRTG	1 cut(s)	466
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	488
MspI	CCGG	2 cut(s)	220, 322
MspR9I	CCNGG	2 cut(s)	323, 330
MvaI	CCWGG	1 cut(s)	330
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	1 cut(s)	351
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	3 cut(s)	186, 326, 327
PfeI	GAWTC	2 cut(s)	200, 454
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	124, 127
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	328
PspGI	CCWGG	1 cut(s)	328
PspN4I	GGNNCC	3 cut(s)	186, 326, 327
PspPI	GGNCC	2 cut(s)	185, 325
PspPPI	RGGWCCY	1 cut(s)	325
PsuI	RGATCY	1 cut(s)	351
PvuII	CAGCTG	1 cut(s)	488
RsaI	GTAC	2 cut(s)	304, 402
RsaNI	GTAC	2 cut(s)	303, 401
RseI	CAYNNNNRTG	1 cut(s)	466
SaqAI	TTAA	4 cut(s)	62, 281, 347, 366
SatI	GCNGC	2 cut(s)	123, 126
Sau3AI	GATC	1 cut(s)	351
Sau96I	GGNCC	2 cut(s)	185, 325
SchI	GAGTC	1 cut(s)	472
ScrFI	CCNGG	2 cut(s)	323, 330
SduI	GDGCHC	1 cut(s)	213
SinI	GGWCC	2 cut(s)	185, 325
SmiMI	CAYNNNNRTG	1 cut(s)	466
SmlI	CTYRAG	2 cut(s)	134, 356
SmoI	CTYRAG	2 cut(s)	134, 356
Sse9I	AATT	2 cut(s)	43, 63
SsiI	CCGC	1 cut(s)	182
StyD4I	CCNGG	2 cut(s)	321, 328
TaaI	ACNGT	3 cut(s)	168, 302, 417
TasI	AATT	2 cut(s)	43, 63
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	200, 454
Tru1I	TTAA	4 cut(s)	62, 281, 347, 366
Tru9I	TTAA	4 cut(s)	62, 281, 347, 366
TscAI	CASTG	2 cut(s)	273, 422
TseI	GCWGC	2 cut(s)	122, 125
TspGWI	ACGGA	1 cut(s)	374
TspRI	CASTG	2 cut(s)	273, 422
VpaK11BI	GGWCC	2 cut(s)	185, 325
XagI	CCTNNNNNAGG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.