Rh5BG226400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0001283
Physical Location & Seq
Reverse (-)
26366896 .. 26412221
45326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG226400.1

Sequence Viewer

Length: 717 bp
ATGAGATTGTTGACCGCGAATGGGATTGAGCTGGTGAAGTTGTTAGAACTGAGATCGAGCCGATTCAGCCTCTCCAGATCGAGCCAATTCCCTTTGAGCGAAGCACTATTGGCGAAATCTGAGAAGACTCAGAACTCGGAGCTGACTCAGCCGGTCGAGCGTGTTGGGTGGAATCGGACCCACAAGCCCAACACAGGGAAGGTGAAGCGAGTACACATACAGCTGGTTCCCGTCGTTGTCAGAACTCCAGGTTTGAAGAAGCTGAGCTATGGTGAGATTACGGGCATTCAGTTCGAAGTTGGATCTAGAGATACTTCGCATTGTTTTCAGATCTATGTTGCCACAAACCCTAGTCTCCTTGCAGCAACTTCTGGAATAGTGAAGCCTTGGAACTCGCCTTCTGCTAAAATGGGATTTCTTAGGTATCTCTCGATGCTCAAGAGACGTGCCACTGGATACAAGAAGAAGGTGTGGAGAAAGAAGCTAAAAAGAGTTGGACAATCCTTGGTTACTAAAAATGGAGCTCTCTCTGCCAAAAGTTACTCTCTGAAGAAAGATTCGGTCTTGTTGGTATCCATTCAACAAAACAAGATAAAAGTACCTAGCAGAGCGCTAGGGTTTGGGAGCACGACCCCGCTAGGGGTCGGAGGCGCCTACAACTTCTCCACTCTAGAAATCTTGACCTACTTTCGTGGATCTGAGTCGCAAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

26.4

Weight (kDa)

10.64

Isoelectric Point (pI)

38.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 650
AccII CGCG 1 cut(s) 17
AciI CCGC 2 cut(s) 15, 635
AclWI GGATC 2 cut(s) 310, 703
AcsI RAATTY 1 cut(s) 709
AcuI CTGAAG 1 cut(s) 569
AcyI GRCGYC 1 cut(s) 651
AfaI GTAC 2 cut(s) 213, 600
AfeI AGCGCT 1 cut(s) 612
AfiI CCNNNNNNNGG 5 cut(s) 21, 194, 195, 639, 640
AgsI TTSAA 2 cut(s) 256, 581
AjiI CACGTC 1 cut(s) 446
AjnI CCWGG 1 cut(s) 247
AluBI AGCT 7 cut(s) 31, 142, 223, 262, 267, 484, 524
AluI AGCT 7 cut(s) 31, 142, 223, 262, 267, 484, 524
Alw21I GWGCWC 2 cut(s) 526, 629
Alw26I GTCTC 2 cut(s) 359, 436
AlwI GGATC 2 cut(s) 310, 703
Aor51HI AGCGCT 1 cut(s) 612
ApeKI GCWGC 1 cut(s) 362
ApoI RAATTY 1 cut(s) 709
AspLEI GCGC 2 cut(s) 613, 653
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 3 cut(s) 46, 214, 284
AsuII TTCGAA 1 cut(s) 294
AvaII GGWCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 650
BanII GRGCYC 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 131
Bbv12I GWGCWC 2 cut(s) 526, 629
BbvI GCAGC 1 cut(s) 374
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 249
BciVI GTATCC 2 cut(s) 449, 583
BcoDI GTCTC 2 cut(s) 359, 436
BfaI CTAG 6 cut(s) 306, 351, 603, 614, 638, 671
BfoI RGCGCY 2 cut(s) 614, 654
BfuI GTATCC 2 cut(s) 449, 583
BglII AGATCT 1 cut(s) 330
BisI GCNGC 1 cut(s) 363
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 249
Bme18I GGWCC 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 177
BmiI GGNNCC 3 cut(s) 179, 228, 652
BmrFI CCNGG 1 cut(s) 249
BmsI GCATC 1 cut(s) 423
BpiI GAAGAC 1 cut(s) 131
BpmI CTGGAG 2 cut(s) 58, 231
Bpu1102I GCTNAGC 1 cut(s) 263
Bpu14I TTCGAA 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 422
BsaHI GRCGYC 1 cut(s) 651
BsaJI CCNNGG 2 cut(s) 386, 504
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 194, 195, 639, 640
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 457
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 386, 504
BseLI CCNNNNNNNGG 5 cut(s) 21, 194, 195, 639, 640
BseMII CTCAG 6 cut(s) 41, 111, 143, 161, 254, 690
BseNI ACTGG 1 cut(s) 457
BseXI GCAGC 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 17
Bsh1285I CGRYCG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 650
BsiEI CGRYCG 1 cut(s) 156
BsiHKAI GWGCWC 2 cut(s) 526, 629
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 5 cut(s) 21, 194, 195, 639, 640
BsmAI GTCTC 2 cut(s) 359, 436
BsmBI CGTCTC 1 cut(s) 436
BsmI GAATGC 1 cut(s) 285
Bsp119I TTCGAA 1 cut(s) 294
Bsp1286I GDGCHC 2 cut(s) 526, 629
Bsp143I GATC 5 cut(s) 53, 77, 302, 330, 695
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 2 cut(s) 15, 635
BspCNI CTCAG 6 cut(s) 42, 112, 142, 160, 255, 691
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 3 cut(s) 179, 228, 652
BspPI GGATC 2 cut(s) 310, 703
BspT104I TTCGAA 1 cut(s) 294
BspT107I GGYRCC 1 cut(s) 650
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 457
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 386, 504
BssMI GATC 5 cut(s) 53, 77, 302, 330, 695
BssNI GRCGYC 1 cut(s) 651
BssT1I CCWWGG 2 cut(s) 386, 504
Bst2UI CCWGG 1 cut(s) 249
BstACI GRCGYC 1 cut(s) 651
BstBI TTCGAA 1 cut(s) 294
BstDEI CTNAG 7 cut(s) 50, 120, 129, 147, 263, 419, 699
BstFNI CGCG 1 cut(s) 17
BstH2I RGCGCY 2 cut(s) 614, 654
BstHHI GCGC 2 cut(s) 613, 653
BstKTI GATC 5 cut(s) 56, 80, 305, 333, 698
BstMAI GTCTC 2 cut(s) 359, 436
BstMBI GATC 5 cut(s) 53, 77, 302, 330, 695
BstMCI CGRYCG 1 cut(s) 156
BstMWI GCNNNNNNNGC 5 cut(s) 66, 110, 148, 157, 530
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 1 cut(s) 374
BstV2I GAAGAC 1 cut(s) 131
BstX2I RGATCY 3 cut(s) 302, 330, 695
BstYI RGATCY 3 cut(s) 302, 330, 695
BsuI GTATCC 2 cut(s) 449, 583
BtrI CACGTC 1 cut(s) 446
BtsIMutI CAGTG 1 cut(s) 450
CfoI GCGC 2 cut(s) 613, 653
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 212, 599
CviQI GTAC 2 cut(s) 212, 599
DdeI CTNAG 7 cut(s) 50, 120, 129, 147, 263, 419, 699
DinI GGCGCC 1 cut(s) 652
DpnI GATC 5 cut(s) 55, 79, 304, 332, 697
DpnII GATC 5 cut(s) 53, 77, 302, 330, 695
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 386, 504
Eco24I GRGCYC 1 cut(s) 526
Eco47I GGWCC 1 cut(s) 177
Eco47III AGCGCT 1 cut(s) 612
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 569
EcoICRI GAGCTC 1 cut(s) 524
EcoRII CCWGG 1 cut(s) 247
EcoT14I CCWWGG 2 cut(s) 386, 504
EcoT38I GRGCYC 1 cut(s) 526
EgeI GGCGCC 1 cut(s) 652
EheI GGCGCC 1 cut(s) 652
ErhI CCWWGG 2 cut(s) 386, 504
Esp3I CGTCTC 1 cut(s) 436
FaiI YATR 3 cut(s) 218, 270, 336
FauI CCCGC 1 cut(s) 642
Fnu4HI GCNGC 1 cut(s) 363
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 1 cut(s) 363
FspBI CTAG 6 cut(s) 306, 351, 603, 614, 638, 671
GlaI GCGC 2 cut(s) 612, 652
GluI GCNGC 1 cut(s) 363
GsuI CTGGAG 2 cut(s) 58, 231
HaeII RGCGCY 2 cut(s) 614, 654
HapII CCGG 1 cut(s) 152
HhaI GCGC 2 cut(s) 613, 653
Hin1I GRCGYC 1 cut(s) 651
Hin6I GCGC 2 cut(s) 611, 651
HinP1I GCGC 2 cut(s) 611, 651
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 6 cut(s) 63, 127, 145, 172, 557, 701
HpaII CCGG 1 cut(s) 152
HphI GGTGA 3 cut(s) 46, 214, 284
Hpy166II GTNNAC 2 cut(s) 12, 214
Hpy188I TCNGA 9 cut(s) 121, 132, 139, 177, 242, 330, 549, 647, 700
Hpy188III TCNNGA 7 cut(s) 75, 306, 372, 430, 439, 671, 679
Hpy8I GTNNAC 2 cut(s) 12, 214
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 3 cut(s) 193, 408, 460
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 1 cut(s) 362
HpyF10VI GCNNNNNNNGC 5 cut(s) 66, 110, 148, 157, 530
HpyF3I CTNAG 7 cut(s) 50, 120, 129, 147, 263, 419, 699
HpySE526I ACGT 1 cut(s) 445
Hsp92I GRCGYC 1 cut(s) 651
HspAI GCGC 2 cut(s) 611, 651
KasI GGCGCC 1 cut(s) 650
Kzo9I GATC 5 cut(s) 53, 77, 302, 330, 695
LmnI GCTCC 3 cut(s) 139, 521, 624
LpnPI CCDG 9 cut(s) 17, 88, 165, 180, 209, 234, 261, 357, 438
Lsp1109I GCAGC 1 cut(s) 374
LweI GCATC 1 cut(s) 423
MaeI CTAG 6 cut(s) 306, 351, 603, 614, 638, 671
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 2 cut(s) 508, 539
MalI GATC 5 cut(s) 55, 79, 304, 332, 697
MboI GATC 5 cut(s) 53, 77, 302, 330, 695
MboII GAAGA 4 cut(s) 136, 268, 475, 562
MflI RGATCY 3 cut(s) 302, 330, 695
MhlI GDGCHC 2 cut(s) 526, 629
MluCI AATT 2 cut(s) 86, 709
Mly113I GGCGCC 1 cut(s) 651
MlyI GAGTC 3 cut(s) 121, 139, 710
MmeI TCCRAC 3 cut(s) 280, 475, 625
MnlI CCTC 2 cut(s) 80, 641
MspA1I CMGCKG 1 cut(s) 223
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 249
Mva1269I GAATGC 1 cut(s) 285
MvaI CCWGG 1 cut(s) 249
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 5 cut(s) 66, 110, 148, 157, 530
NarI GGCGCC 1 cut(s) 651
NdeII GATC 5 cut(s) 53, 77, 302, 330, 695
NlaIV GGNNCC 3 cut(s) 179, 228, 652
NspV TTCGAA 1 cut(s) 294
PctI GAATGC 1 cut(s) 285
PfeI GAWTC 3 cut(s) 63, 172, 557
PkrI GCNGC 1 cut(s) 364
PleI GAGTC 3 cut(s) 121, 139, 709
PluTI GGCGCC 1 cut(s) 654
PpsI GAGTC 3 cut(s) 121, 139, 709
Psp124BI GAGCTC 1 cut(s) 526
Psp6I CCWGG 1 cut(s) 247
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 179, 228, 652
PspPI GGNCC 1 cut(s) 177
PsuI RGATCY 3 cut(s) 302, 330, 695
PvuII CAGCTG 1 cut(s) 223
RsaI GTAC 2 cut(s) 213, 600
RsaNI GTAC 2 cut(s) 212, 599
SacI GAGCTC 1 cut(s) 526
SatI GCNGC 1 cut(s) 363
Sau3AI GATC 5 cut(s) 53, 77, 302, 330, 695
Sau96I GGNCC 1 cut(s) 177
SchI GAGTC 3 cut(s) 121, 139, 710
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 526, 629
SfaNI GCATC 1 cut(s) 423
SfoI GGCGCC 1 cut(s) 652
SfuI TTCGAA 1 cut(s) 294
SinI GGWCC 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 437
SmoI CTYRAG 1 cut(s) 437
Sse9I AATT 2 cut(s) 86, 709
SsiI CCGC 2 cut(s) 15, 635
SspDI GGCGCC 1 cut(s) 650
SspMI CTAG 6 cut(s) 306, 351, 603, 614, 638, 671
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 1 cut(s) 247
StyI CCWWGG 2 cut(s) 386, 504
TaiI ACGT 1 cut(s) 448
TaqI TCGA 5 cut(s) 56, 80, 156, 294, 431
TaqII GACCGA 1 cut(s) 550
TasI AATT 2 cut(s) 86, 709
TatI WGTACW 1 cut(s) 211
TfiI GAWTC 3 cut(s) 63, 172, 557
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 362
TspRI CASTG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 177
XapI RAATTY 1 cut(s) 709
XbaI TCTAGA 2 cut(s) 305, 670
XspI CTAG 6 cut(s) 306, 351, 603, 614, 638, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.