Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8249761.1

Orthogroup ID

OG0001283

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 787

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8249761.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 286 bp

atccttgagaaggttaaaatagcttatgacctccctatagtcacagatgtacacgaatctatacagtgcgaagaagttggcaaagttgcagatatcattcagattcctgcatttttatgccgtcagacagatcttctagttgcagcagccaagactggaaagattgtcaatattaagaagggtcaattctgtgctccttctgtcatggtaaattctgctgagaagattagactggcaggaaatccaaatgtgatggtttgtgagaggggaactatgttcggttata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000271 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0005996 GO:0008150 GO:0008152 GO:0008676 GO:0009058 GO:0009059 GO:0009653 GO:0009664 GO:0009826 GO:0009832 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010306 GO:0010383 GO:0010393 GO:0010396 GO:0016043 GO:0016049 GO:0016051 GO:0016740 GO:0016765 GO:0017144 GO:0022414 GO:0030154 GO:0032501 GO:0032502 GO:0032989 GO:0033692 GO:0034637 GO:0034645 GO:0040007 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044281 GO:0044283 GO:0044706 GO:0045229 GO:0045488 GO:0045489 GO:0046364 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0052325 GO:0052546 GO:0060560 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00540 ko01100 map00540 map01100

Pfam Domains

Protein Families

DAHP_synth_1

Protein Analysis

95

Amino Acids

10.36

Weight (kDa)

7.84

Isoelectric Point (pI)

15.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001283)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16340 AT1G16340 AT1G16340 AT1G16340 AT1G79500 AT1G79500 AT1G79500 AT1G79500
fragaria_vesca	FvH4_3g14500 FvH4_3g14500
malus_domestica	MD05G1236400.v1.1 MD10G1213400.v1.1
prunus_persica	Prupe.4G129800_v2.0.a1
pyrus_communis	pycom05g21340 pycom10g18020
rosa_chinensis	RchiOBHm_Chr2g0110821 RchiOBHm_Chr5g0023881 RchiOBHm_Chr5g0042561 RchiOBHm_Chr6g0274781
rosa_laevigata	RLG00000018663 RLG00000032744
rosa_multiflora	Rmu_co8249761.1_g000001 Rmu_ssc0000027.1_g000002
rosa_roxburghii	Rroxscaffold_1G00055350 Rroxscaffold_2G00121930 Rroxscaffold_5G00352330
rosa_rugosa	Rorug05G0080000 Rorug05G0080000 Rorug06G0026900
rosa_samantha	Rh1AG097200 Rh1AG097300 Rh2BG270300 Rh2BG304100 Rh2CG282400 Rh4BG085300 Rh4CG199500 Rh4DG214900 Rh4DG223600 Rh5AG170100 Rh5AG377700 Rh5BG167400 Rh5BG226400 Rh5BG292100 Rh5BG528700 Rh5CG182900 Rh5CG230300 Rh5CG252700 Rh5CG553200 Rh5DG169400 Rh5DG383700 Rh6DG195400
rosa_wichuraiana	Rw0G008480 Rw0G009290 Rw4G015290 Rw5G015380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	10
AluBI	AGCT	1 cut(s)	23
AluI	AGCT	1 cut(s)	23
Alw21I	GWGCWC	1 cut(s)	196
ApeKI	GCWGC	2 cut(s)	143, 146
ApoI	RAATTY	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	155, 158
BccI	CCATC	1 cut(s)	247
BceAI	ACGGC	1 cut(s)	105
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	36
BglII	AGATCT	1 cut(s)	130
BisI	GCNGC	2 cut(s)	144, 147
BlsI	GCNGC	2 cut(s)	145, 148
BpuEI	CTTGAG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	10
Bse1I	ACTGG	2 cut(s)	160, 237
BseLI	CCNNNNNNNGG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	210
BseNI	ACTGG	2 cut(s)	160, 237
BseXI	GCAGC	2 cut(s)	155, 158
BsiHKAI	GWGCWC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp1407I	TGTACA	1 cut(s)	49
Bsp143I	GATC	1 cut(s)	130
BspCNI	CTCAG	1 cut(s)	211
BsrGI	TGTACA	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	160, 237
BssMI	GATC	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	66
BstAUI	TGTACA	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	219
BstENI	CCTNNNNNAGG	1 cut(s)	8
BstKTI	GATC	1 cut(s)	133
BstMBI	GATC	1 cut(s)	130
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	155, 158
BstX2I	RGATCY	1 cut(s)	130
BstYI	RGATCY	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	71
Csp6I	GTAC	1 cut(s)	50
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	2 cut(s)	23, 149
CviKI_1	RGCY	2 cut(s)	23, 149
CviQI	GTAC	1 cut(s)	50
DdeI	CTNAG	1 cut(s)	219
DpnI	GATC	1 cut(s)	132
DpnII	GATC	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	8
EcoRV	GATATC	1 cut(s)	94
FaeI	CATG	1 cut(s)	208
FaiI	YATR	7 cut(s)	27, 38, 62, 118, 206, 275, 285
FatI	CATG	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	144, 147
Fsp4HI	GCNGC	2 cut(s)	144, 147
FspBI	CTAG	1 cut(s)	137
GluI	GCNGC	2 cut(s)	144, 147
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	2 cut(s)	56, 103
Hpy166II	GTNNAC	1 cut(s)	52
Hpy188I	TCNGA	2 cut(s)	102, 126
Hpy8I	GTNNAC	1 cut(s)	52
HpyAV	CCTTC	3 cut(s)	4, 172, 207
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	89, 110, 143
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	130
LmnI	GCTCC	1 cut(s)	199
LpnPI	CCDG	4 cut(s)	120, 141, 218, 222
Lsp1109I	GCAGC	2 cut(s)	155, 158
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	132
MboI	GATC	1 cut(s)	130
MboII	GAAGA	3 cut(s)	83, 125, 235
MflI	RGATCY	1 cut(s)	130
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	2 cut(s)	185, 211
MnlI	CCTC	2 cut(s)	41, 258
MseI	TTAA	2 cut(s)	15, 174
MslI	CAYNNNNRTG	1 cut(s)	115
NdeII	GATC	1 cut(s)	130
NlaIII	CATG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	56, 103
PkrI	GCNGC	2 cut(s)	145, 148
PsuI	RGATCY	1 cut(s)	130
RsaI	GTAC	1 cut(s)	51
RsaNI	GTAC	1 cut(s)	50
RseI	CAYNNNNRTG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	15, 174
SatI	GCNGC	2 cut(s)	144, 147
Sau3AI	GATC	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	3 cut(s)	15, 25, 33
SfcI	CTRYAG	1 cut(s)	36
SgeI	CNNG	9 cut(s)	17, 65, 119, 149, 163, 168, 217, 245, 249
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	2 cut(s)	185, 211
SspI	AATATT	1 cut(s)	172
SspMI	CTAG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	66
TasI	AATT	2 cut(s)	185, 211
TatI	WGTACW	1 cut(s)	49
TfiI	GAWTC	2 cut(s)	56, 103
Tru1I	TTAA	2 cut(s)	15, 174
Tru9I	TTAA	2 cut(s)	15, 174
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	40
TseI	GCWGC	2 cut(s)	143, 146
Tsp45I	GTSAC	1 cut(s)	40
TspRI	CASTG	1 cut(s)	71
XagI	CCTNNNNNAGG	1 cut(s)	8
XapI	RAATTY	1 cut(s)	211
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.